data_7UFA # _model_server_result.job_id IoUH9w91HfRQ0e5pTyInrg _model_server_result.datetime_utc '2024-11-24 09:07:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7UFA # _exptl.entry_id 7UFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UFA _cell.length_a 76.58 _cell.length_b 101.73 _cell.length_c 125.51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N29 NI6 . A NI6 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7UFA _atom_sites.fract_transf_matrix[1][1] 0.013058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 NI6 A 1 602 700 NI6 LIG . D 4 HOH A 1 701 3 HOH HOH . D 4 HOH A 2 702 2 HOH HOH . D 4 HOH A 3 703 4 HOH HOH . D 4 HOH A 4 704 1 HOH HOH . D 4 HOH A 5 705 5 HOH HOH . D 4 HOH A 6 706 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.202 -19.883 -9.168 1 59.63 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -15.631 -22.645 -13.148 1 67.63 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.409 -26.513 -10.335 1 50.27 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.471 -23.855 -6.378 1 53.12 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.274 -20.282 -10.486 1 62.38 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.162 -19.422 -11.647 1 61.99 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.281 -20.182 -12.74 1 70.4 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.471 -21.554 -12.319 1 60.98 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.226 -19.691 -14.202 1 46.24 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -14.947 -17.893 -11.621 1 57.68 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.478 -17.588 -11.899 1 63.18 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.26 -16.1 -11.969 1 70.73 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -12.137 -15.679 -12.347 1 75.65 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -14.208 -15.335 -11.652 1 63.47 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -15.89 -23.937 -12.743 1 62.3 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.123 -25.076 -13.61 1 72.84 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.339 -26.154 -12.829 1 68.7 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.249 -25.717 -11.449 1 51.97 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.105 -24.983 -15.153 1 52.56 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -16.637 -27.627 -13.218 1 69.46 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.715 -28.094 -14.47 1 81.95 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.128 -26.158 -9.032 1 56.64 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -15.954 -27.068 -7.92 1 71.9 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.692 -26.355 -6.823 1 70.04 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.693 -24.946 -7.195 1 59.26 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.049 -28.608 -7.99 1 64.43 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.446 -26.99 -5.432 1 57.94 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.1 -26.276 -4.358 1 77.8 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.362 -22.539 -6.777 1 64.24 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.223 -21.386 -5.911 1 79.49 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -15.151 -20.294 -6.679 1 71.03 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.239 -20.71 -8.064 1 50.75 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -15.172 -21.418 -4.367 1 55.51 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.992 -18.84 -6.182 1 52.16 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.523 -18.587 -5.857 1 54.61 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -13.351 -17.213 -5.266 1 71.94 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -12.234 -16.911 -4.772 1 69.04 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -14.328 -16.422 -5.285 1 66.67 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.459 -21.576 -10.936 1 71.33 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -15.976 -24.365 -11.434 1 66.2 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -15.962 -24.873 -8.552 1 59.77 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.368 -22.086 -8.084 1 78.07 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.558 -23.248 -9.758 1 60.96 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #