data_7UFB # _model_server_result.job_id ULxpA-tUv_R_BIxakf66Ow _model_server_result.datetime_utc '2024-11-24 07:33:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7UFB # _exptl.entry_id 7UFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UFB _cell.length_a 76.842 _cell.length_b 101.671 _cell.length_c 128.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N06 NJ0 . A NJ0 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7UFB _atom_sites.fract_transf_matrix[1][1] 0.013014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 NJ0 A 1 602 700 NJ0 365 . D 4 HOH A 1 701 6 HOH HOH . D 4 HOH A 2 702 19 HOH HOH . D 4 HOH A 3 703 17 HOH HOH . D 4 HOH A 4 704 5 HOH HOH . D 4 HOH A 5 705 3 HOH HOH . D 4 HOH A 6 706 1 HOH HOH . D 4 HOH A 7 707 15 HOH HOH . D 4 HOH A 8 708 7 HOH HOH . D 4 HOH A 9 709 14 HOH HOH . D 4 HOH A 10 710 2 HOH HOH . D 4 HOH A 11 711 11 HOH HOH . D 4 HOH A 12 712 4 HOH HOH . D 4 HOH A 13 713 16 HOH HOH . D 4 HOH A 14 714 13 HOH HOH . D 4 HOH A 15 715 10 HOH HOH . D 4 HOH A 16 716 12 HOH HOH . D 4 HOH A 17 717 8 HOH HOH . D 4 HOH A 18 718 20 HOH HOH . D 4 HOH A 19 719 9 HOH HOH . D 4 HOH A 20 720 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.254 -19.766 -9.634 1 57.92 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -15.972 -22.576 -13.527 1 64.17 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.638 -26.384 -10.605 1 57 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.405 -23.681 -6.756 1 47.37 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.421 -20.185 -10.934 1 47.72 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.384 -19.335 -12.104 1 56.8 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.581 -20.106 -13.177 1 58.69 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.747 -21.475 -12.728 1 59.83 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.623 -19.625 -14.643 1 54.77 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -15.166 -17.807 -12.093 1 53.93 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.703 -17.486 -12.379 1 64.17 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.541 -15.992 -12.485 1 65.24 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -12.482 -15.551 -13 1 78.86 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -14.467 -15.249 -12.066 1 63.33 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -16.232 -23.855 -13.081 1 59.65 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.54 -25.004 -13.91 1 53.55 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.729 -26.06 -13.098 1 52.36 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.537 -25.604 -11.736 1 49.49 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.624 -24.944 -15.453 1 51.2 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -17.074 -27.534 -13.436 1 53.59 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -17.12 -28.048 -14.671 1 66.49 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.281 -26.014 -9.325 1 61.6 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -16.098 -26.907 -8.204 1 61.24 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.755 -26.184 -7.138 1 59.2 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.711 -24.782 -7.538 1 56.75 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.261 -28.441 -8.226 1 52.43 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.48 -26.815 -5.754 1 52.09 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -15.029 -26.109 -4.718 1 67.37 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.298 -22.372 -7.188 1 58.7 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -15.07 -21.198 -6.361 1 51.98 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -15.032 -20.124 -7.162 1 53.16 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.226 -20.576 -8.521 1 52.6 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -14.909 -21.195 -4.826 1 62.86 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.807 -18.653 -6.747 1 44.33 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -13.312 -18.419 -6.54 1 44.32 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -13.066 -17.054 -5.945 1 63.46 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -11.987 -16.853 -5.325 1 55.42 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -13.948 -16.169 -6.084 1 63.58 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.641 -21.484 -11.35 1 51 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -16.237 -24.259 -11.763 1 53.21 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -16.038 -24.728 -8.882 1 51.46 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.389 -21.949 -8.501 1 53.29 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.853 -23.117 -10.121 1 54.02 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #