data_7UFB
#
_model_server_result.job_id            rDiA_uV-He2RXr8S1TA-ew 
_model_server_result.datetime_utc      '2024-11-28 01:17:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ufb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    7UFB 
#
_exptl.entry_id    7UFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              524.676 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-3-phenyl-2-({(2S)-3-phenyl-2-[2-(pyridin-3-yl)acetamido]propyl}sulfanyl)-N-[(pyridin-3-yl)methyl]propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UFB 
_cell.length_a            76.842 
_cell.length_b            101.671 
_cell.length_c            128.05 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N06 NJ0 . A NJ0 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C31 H32 N4 O2 S' 
_chem_comp.formula_weight    524.676 
_chem_comp.id                NJ0 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-3-phenyl-2-({(2S)-3-phenyl-2-[2-(pyridin-3-yl)acetamido]propyl}sulfanyl)-N-[(pyridin-3-yl)methyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C37 NJ0 doub 319 n y 
C36 C35 NJ0 sing 320 n y 
C37 C38 NJ0 sing 321 n y 
C35 C34 NJ0 doub 322 n y 
C38 C33 NJ0 doub 323 n y 
C30 C31 NJ0 doub 324 n y 
C30 C29 NJ0 sing 325 n y 
C34 C33 NJ0 sing 326 n y 
C33 C32 NJ0 sing 327 n n 
C31 C26 NJ0 sing 328 n y 
C32 C11 NJ0 sing 329 n n 
C29 N28 NJ0 doub 330 n y 
C26 C25 NJ0 sing 331 n n 
C26 C27 NJ0 doub 332 n y 
C11 C12 NJ0 sing 333 n n 
C11 N10 NJ0 sing 334 n n 
N28 C27 NJ0 sing 335 n y 
C07 C08 NJ0 doub 336 n y 
C07 N06 NJ0 sing 337 n y 
C25 N24 NJ0 sing 338 n n 
O23 C22 NJ0 doub 339 n n 
C12 S13 NJ0 sing 340 n n 
C08 C09 NJ0 sing 341 n y 
N10 C02 NJ0 sing 342 n n 
N06 C05 NJ0 doub 343 n y 
C22 N24 NJ0 sing 344 n n 
C22 C14 NJ0 sing 345 n n 
C09 C04 NJ0 doub 346 n y 
C05 C04 NJ0 sing 347 n y 
C04 C03 NJ0 sing 348 n n 
C02 O01 NJ0 doub 349 n n 
C02 C03 NJ0 sing 350 n n 
S13 C14 NJ0 sing 351 n n 
C14 C15 NJ0 sing 352 n n 
C15 C16 NJ0 sing 353 n n 
C16 C17 NJ0 doub 354 n y 
C16 C21 NJ0 sing 355 n y 
C17 C18 NJ0 sing 356 n y 
C21 C20 NJ0 doub 357 n y 
C18 C19 NJ0 doub 358 n y 
C20 C19 NJ0 sing 359 n y 
C11 H1 NJ0 sing 360 n n 
C12 H2 NJ0 sing 361 n n 
C12 H3 NJ0 sing 362 n n 
C14 H4 NJ0 sing 363 n n 
C15 H5 NJ0 sing 364 n n 
C15 H6 NJ0 sing 365 n n 
C17 H7 NJ0 sing 366 n n 
C20 H8 NJ0 sing 367 n n 
C21 H9 NJ0 sing 368 n n 
C03 H10 NJ0 sing 369 n n 
C03 H11 NJ0 sing 370 n n 
C05 H12 NJ0 sing 371 n n 
C07 H13 NJ0 sing 372 n n 
C08 H14 NJ0 sing 373 n n 
C09 H15 NJ0 sing 374 n n 
C18 H16 NJ0 sing 375 n n 
C19 H17 NJ0 sing 376 n n 
C25 H18 NJ0 sing 377 n n 
C25 H19 NJ0 sing 378 n n 
C27 H20 NJ0 sing 379 n n 
C29 H21 NJ0 sing 380 n n 
C30 H22 NJ0 sing 381 n n 
C31 H23 NJ0 sing 382 n n 
C32 H24 NJ0 sing 383 n n 
C32 H25 NJ0 sing 384 n n 
C34 H26 NJ0 sing 385 n n 
C35 H27 NJ0 sing 386 n n 
C36 H28 NJ0 sing 387 n n 
C37 H29 NJ0 sing 388 n n 
C38 H30 NJ0 sing 389 n n 
N10 H31 NJ0 sing 390 n n 
N24 H32 NJ0 sing 391 n n 
#
_atom_sites.entry_id                     7UFB 
_atom_sites.fract_transf_matrix[1][1]    0.013014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009836 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007809 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 NJ0 A 1 602 700 NJ0 365 . 
D 4 HOH A 1 701 6 HOH HOH . 
D 4 HOH A 2 702 19 HOH HOH . 
D 4 HOH A 3 703 17 HOH HOH . 
D 4 HOH A 4 704 5 HOH HOH . 
D 4 HOH A 5 705 3 HOH HOH . 
D 4 HOH A 6 706 1 HOH HOH . 
D 4 HOH A 7 707 15 HOH HOH . 
D 4 HOH A 8 708 7 HOH HOH . 
D 4 HOH A 9 709 14 HOH HOH . 
D 4 HOH A 10 710 2 HOH HOH . 
D 4 HOH A 11 711 11 HOH HOH . 
D 4 HOH A 12 712 4 HOH HOH . 
D 4 HOH A 13 713 16 HOH HOH . 
D 4 HOH A 14 714 13 HOH HOH . 
D 4 HOH A 15 715 10 HOH HOH . 
D 4 HOH A 16 716 12 HOH HOH . 
D 4 HOH A 17 717 8 HOH HOH . 
D 4 HOH A 18 718 20 HOH HOH . 
D 4 HOH A 19 719 9 HOH HOH . 
D 4 HOH A 20 720 18 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 NJ0 . . . C 3 -19.076 -17.182 -10.583 1 91.01 ? C11 NJ0 602 A 1 
HETATM 2 C C12 NJ0 . . . C 3 -19.614 -15.8 -10.1 1 91.94 ? C12 NJ0 602 A 1 
HETATM 3 C C14 NJ0 . . . C 3 -21.697 -14.863 -7.996 1 113.75 ? C14 NJ0 602 A 1 
HETATM 4 C C15 NJ0 . . . C 3 -22.672 -16.051 -7.904 1 105.26 ? C15 NJ0 602 A 1 
HETATM 5 C C16 NJ0 . . . C 3 -22.718 -16.753 -6.583 1 105.96 ? C16 NJ0 602 A 1 
HETATM 6 C C17 NJ0 . . . C 3 -21.85 -17.803 -6.261 1 106.73 ? C17 NJ0 602 A 1 
HETATM 7 C C20 NJ0 . . . C 3 -23.689 -16.974 -4.375 1 131.58 ? C20 NJ0 602 A 1 
HETATM 8 C C21 NJ0 . . . C 3 -23.622 -16.357 -5.612 1 120.48 ? C21 NJ0 602 A 1 
HETATM 9 C C22 NJ0 . . . C 3 -21.996 -13.952 -9.19 1 127.16 ? C22 NJ0 602 A 1 
HETATM 10 O O23 NJ0 . . . C 3 -22.591 -14.356 -10.173 1 130.79 ? O23 NJ0 602 A 1 
HETATM 11 C C02 NJ0 . . . C 3 -18.99 -18.704 -8.478 1 79.77 ? C02 NJ0 602 A 1 
HETATM 12 C C03 NJ0 . . . C 3 -19.556 -19.954 -7.782 1 67.03 ? C03 NJ0 602 A 1 
HETATM 13 C C04 NJ0 . . . C 3 -19.505 -21.19 -8.627 1 51.29 ? C04 NJ0 602 A 1 
HETATM 14 C C05 NJ0 . . . C 3 -18.26 -21.77 -8.928 1 62.02 ? C05 NJ0 602 A 1 
HETATM 15 C C07 NJ0 . . . C 3 -19.194 -23.438 -10.211 1 73.35 ? C07 NJ0 602 A 1 
HETATM 16 C C08 NJ0 . . . C 3 -20.479 -22.93 -9.978 1 65.83 ? C08 NJ0 602 A 1 
HETATM 17 C C09 NJ0 . . . C 3 -20.624 -21.795 -9.186 1 55.18 ? C09 NJ0 602 A 1 
HETATM 18 C C18 NJ0 . . . C 3 -21.909 -18.425 -5.021 1 122.73 ? C18 NJ0 602 A 1 
HETATM 19 C C19 NJ0 . . . C 3 -22.829 -18.011 -4.069 1 132.23 ? C19 NJ0 602 A 1 
HETATM 20 C C25 NJ0 . . . C 3 -21.772 -11.632 -10.194 1 126.77 ? C25 NJ0 602 A 1 
HETATM 21 C C26 NJ0 . . . C 3 -23.167 -11.465 -10.755 1 120.08 ? C26 NJ0 602 A 1 
HETATM 22 C C27 NJ0 . . . C 3 -24.236 -11.028 -9.958 1 110.19 ? C27 NJ0 602 A 1 
HETATM 23 C C29 NJ0 . . . C 3 -25.748 -11.135 -11.707 1 106.51 ? C29 NJ0 602 A 1 
HETATM 24 C C30 NJ0 . . . C 3 -24.752 -11.576 -12.582 1 110.97 ? C30 NJ0 602 A 1 
HETATM 25 C C31 NJ0 . . . C 3 -23.458 -11.738 -12.093 1 115.72 ? C31 NJ0 602 A 1 
HETATM 26 C C32 NJ0 . . . C 3 -19.468 -17.496 -12.06 1 91.42 ? C32 NJ0 602 A 1 
HETATM 27 C C33 NJ0 . . . C 3 -19.784 -18.937 -12.41 1 98.03 ? C33 NJ0 602 A 1 
HETATM 28 C C34 NJ0 . . . C 3 -18.772 -19.89 -12.517 1 112.86 ? C34 NJ0 602 A 1 
HETATM 29 C C35 NJ0 . . . C 3 -19.046 -21.217 -12.842 1 125.28 ? C35 NJ0 602 A 1 
HETATM 30 C C36 NJ0 . . . C 3 -20.349 -21.636 -13.072 1 124.44 ? C36 NJ0 602 A 1 
HETATM 31 C C37 NJ0 . . . C 3 -21.373 -20.704 -12.968 1 115.35 ? C37 NJ0 602 A 1 
HETATM 32 C C38 NJ0 . . . C 3 -21.093 -19.376 -12.644 1 102.37 ? C38 NJ0 602 A 1 
HETATM 33 N N06 NJ0 . . . C 3 -18.085 -22.868 -9.695 1 60.12 ? N06 NJ0 602 A 1 
HETATM 34 N N10 NJ0 . . . C 3 -19.509 -18.334 -9.734 1 87.07 ? N10 NJ0 602 A 1 
HETATM 35 N N24 NJ0 . . . C 3 -21.56 -12.614 -9.118 1 126.59 ? N24 NJ0 602 A 1 
HETATM 36 N N28 NJ0 . . . C 3 -25.502 -10.861 -10.405 1 110.99 ? N28 NJ0 602 A 1 
HETATM 37 O O01 NJ0 . . . C 3 -18.094 -18.081 -7.939 1 93.11 ? O01 NJ0 602 A 1 
HETATM 38 S S13 NJ0 . . . C 3 -19.978 -15.571 -8.281 1 98.78 ? S13 NJ0 602 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           861 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#