data_7UFC
#
_model_server_result.job_id            6xyJ3j9giQm5ZQwrs-12HQ 
_model_server_result.datetime_utc      '2024-11-24 08:51:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ufc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    7UFC 
#
_exptl.entry_id    7UFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.73 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-3-phenyl-2-({(2S)-3-phenyl-2-[3-(pyridin-3-yl)propanamido]propyl}sulfanyl)-N-[2-(pyridin-3-yl)ethyl]propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UFC 
_cell.length_a            77.609 
_cell.length_b            103 
_cell.length_c            128.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D 1 1 
A,B,C,D 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N30 NJO . A NJO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
#
_chem_comp.formula           'C33 H36 N4 O2 S' 
_chem_comp.formula_weight    552.73 
_chem_comp.id                NJO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-3-phenyl-2-({(2S)-3-phenyl-2-[3-(pyridin-3-yl)propanamido]propyl}sulfanyl)-N-[2-(pyridin-3-yl)ethyl]propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C08 NJO doub 319 n y 
C07 C06 NJO sing 320 n y 
C08 N09 NJO sing 321 n y 
C06 C05 NJO doub 322 n y 
N09 C10 NJO doub 323 n y 
C05 C10 NJO sing 324 n y 
C05 C04 NJO sing 325 n n 
C39 C40 NJO doub 326 n y 
C39 C38 NJO sing 327 n y 
C40 C35 NJO sing 328 n y 
C03 C04 NJO sing 329 n n 
C03 C02 NJO sing 330 n n 
C19 C18 NJO doub 331 n y 
C19 C20 NJO sing 332 n y 
C31 C32 NJO doub 333 n y 
C31 N30 NJO sing 334 n y 
C38 C37 NJO doub 335 n y 
C18 C17 NJO sing 336 n y 
N11 C02 NJO sing 337 n n 
N11 C12 NJO sing 338 n n 
C02 O01 NJO doub 339 n n 
C32 C33 NJO sing 340 n y 
C20 C21 NJO doub 341 n y 
C35 C34 NJO sing 342 n n 
C35 C36 NJO doub 343 n y 
N30 C29 NJO doub 344 n y 
C34 C12 NJO sing 345 n n 
C12 C13 NJO sing 346 n n 
C17 C16 NJO sing 347 n n 
C17 C22 NJO doub 348 n y 
C37 C36 NJO sing 349 n y 
C33 C28 NJO doub 350 n y 
C21 C22 NJO sing 351 n y 
C16 C15 NJO sing 352 n n 
C29 C28 NJO sing 353 n y 
C15 S14 NJO sing 354 n n 
C15 C23 NJO sing 355 n n 
C28 C27 NJO sing 356 n n 
C13 S14 NJO sing 357 n n 
N25 C23 NJO sing 358 n n 
N25 C26 NJO sing 359 n n 
C23 O24 NJO doub 360 n n 
C27 C26 NJO sing 361 n n 
C20 H1 NJO sing 362 n n 
C19 H2 NJO sing 363 n n 
C18 H3 NJO sing 364 n n 
C16 H4 NJO sing 365 n n 
C16 H5 NJO sing 366 n n 
C15 H6 NJO sing 367 n n 
C13 H7 NJO sing 368 n n 
C13 H8 NJO sing 369 n n 
C10 H9 NJO sing 370 n n 
C12 H10 NJO sing 371 n n 
C21 H11 NJO sing 372 n n 
C22 H12 NJO sing 373 n n 
C03 H13 NJO sing 374 n n 
C04 H14 NJO sing 375 n n 
C06 H15 NJO sing 376 n n 
C07 H16 NJO sing 377 n n 
C08 H17 NJO sing 378 n n 
C26 H18 NJO sing 379 n n 
C27 H19 NJO sing 380 n n 
C27 H20 NJO sing 381 n n 
C29 H21 NJO sing 382 n n 
C31 H22 NJO sing 383 n n 
C32 H23 NJO sing 384 n n 
C33 H24 NJO sing 385 n n 
C34 H25 NJO sing 386 n n 
C34 H26 NJO sing 387 n n 
C36 H27 NJO sing 388 n n 
C37 H28 NJO sing 389 n n 
C38 H29 NJO sing 390 n n 
C39 H30 NJO sing 391 n n 
C40 H31 NJO sing 392 n n 
N11 H32 NJO sing 393 n n 
C03 H33 NJO sing 394 n n 
C04 H34 NJO sing 395 n n 
C26 H35 NJO sing 396 n n 
N25 H36 NJO sing 397 n n 
#
_atom_sites.entry_id                     7UFC 
_atom_sites.fract_transf_matrix[1][1]    0.012885 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009709 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007788 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 500 HEM HEM . 
C 3 NJO A 1 602 700 NJO 374 . 
D 4 HOH A 1 701 4 HOH HOH . 
D 4 HOH A 2 702 2 HOH HOH . 
D 4 HOH A 3 703 5 HOH HOH . 
D 4 HOH A 4 704 1 HOH HOH . 
D 4 HOH A 5 705 7 HOH HOH . 
D 4 HOH A 6 706 8 HOH HOH . 
D 4 HOH A 7 707 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C20 NJO . . . C 3 -23.696 -23.35 -10.318 1 118.42 ? C20 NJO 602 A 1 
HETATM 2 C C19 NJO . . . C 3 -23.202 -22.316 -11.112 1 118.76 ? C19 NJO 602 A 1 
HETATM 3 C C17 NJO . . . C 3 -23.886 -20.632 -9.468 1 115.85 ? C17 NJO 602 A 1 
HETATM 4 C C18 NJO . . . C 3 -23.296 -20.983 -10.686 1 119.89 ? C18 NJO 602 A 1 
HETATM 5 C C16 NJO . . . C 3 -23.994 -19.175 -8.993 1 124.78 ? C16 NJO 602 A 1 
HETATM 6 C C15 NJO . . . C 3 -22.77 -18.559 -8.3 1 125.6 ? C15 NJO 602 A 1 
HETATM 7 C C13 NJO . . . C 3 -22.09 -15.537 -8.145 1 123.9 ? C13 NJO 602 A 1 
HETATM 8 C C10 NJO . . . C 3 -26.4 -9.82 -11.509 1 137.66 ? C10 NJO 602 A 1 
HETATM 9 C C12 NJO . . . C 3 -21.856 -15.709 -9.711 1 123.28 ? C12 NJO 602 A 1 
HETATM 10 C C21 NJO . . . C 3 -24.288 -23.026 -9.097 1 113.32 ? C21 NJO 602 A 1 
HETATM 11 C C22 NJO . . . C 3 -24.376 -21.685 -8.688 1 114.4 ? C22 NJO 602 A 1 
HETATM 12 C C02 NJO . . . C 3 -22.684 -13.317 -10.44 1 138.81 ? C02 NJO 602 A 1 
HETATM 13 C C03 NJO . . . C 3 -23.494 -12.364 -11.344 1 133.02 ? C03 NJO 602 A 1 
HETATM 14 C C04 NJO . . . C 3 -24.82 -11.725 -10.835 1 129.09 ? C04 NJO 602 A 1 
HETATM 15 C C05 NJO . . . C 3 -25.681 -10.984 -11.867 1 134.35 ? C05 NJO 602 A 1 
HETATM 16 C C06 NJO . . . C 3 -25.819 -11.39 -13.199 1 140.05 ? C06 NJO 602 A 1 
HETATM 17 C C07 NJO . . . C 3 -26.624 -10.671 -14.104 1 149.14 ? C07 NJO 602 A 1 
HETATM 18 C C08 NJO . . . C 3 -27.296 -9.528 -13.645 1 152.63 ? C08 NJO 602 A 1 
HETATM 19 C C23 NJO . . . C 3 -22.173 -19.52 -7.259 1 110.84 ? C23 NJO 602 A 1 
HETATM 20 C C26 NJO . . . C 3 -20.347 -21.054 -6.357 1 92.72 ? C26 NJO 602 A 1 
HETATM 21 C C27 NJO . . . C 3 -19.107 -21.888 -6.839 1 89.39 ? C27 NJO 602 A 1 
HETATM 22 C C28 NJO . . . C 3 -19.063 -22.386 -8.297 1 58.49 ? C28 NJO 602 A 1 
HETATM 23 C C29 NJO . . . C 3 -17.839 -22.696 -8.928 1 62.36 ? C29 NJO 602 A 1 
HETATM 24 C C31 NJO . . . C 3 -18.794 -23.318 -10.947 1 55.63 ? C31 NJO 602 A 1 
HETATM 25 C C32 NJO . . . C 3 -20.072 -23.048 -10.431 1 49.39 ? C32 NJO 602 A 1 
HETATM 26 C C33 NJO . . . C 3 -20.195 -22.58 -9.106 1 44.08 ? C33 NJO 602 A 1 
HETATM 27 C C34 NJO . . . C 3 -20.336 -15.68 -10.053 1 102.82 ? C34 NJO 602 A 1 
HETATM 28 C C35 NJO . . . C 3 -19.69 -17.048 -10.27 1 88.48 ? C35 NJO 602 A 1 
HETATM 29 C C36 NJO . . . C 3 -18.994 -17.706 -9.25 1 69.6 ? C36 NJO 602 A 1 
HETATM 30 C C37 NJO . . . C 3 -18.407 -18.965 -9.45 1 93.51 ? C37 NJO 602 A 1 
HETATM 31 C C38 NJO . . . C 3 -18.508 -19.603 -10.691 1 84 ? C38 NJO 602 A 1 
HETATM 32 C C39 NJO . . . C 3 -19.199 -18.969 -11.719 1 78.02 ? C39 NJO 602 A 1 
HETATM 33 C C40 NJO . . . C 3 -19.78 -17.709 -11.504 1 94.16 ? C40 NJO 602 A 1 
HETATM 34 N N09 NJO . . . C 3 -27.184 -9.109 -12.362 1 150.74 ? N09 NJO 602 A 1 
HETATM 35 N N11 NJO . . . C 3 -22.623 -14.733 -10.564 1 132.17 ? N11 NJO 602 A 1 
HETATM 36 N N25 NJO . . . C 3 -20.927 -20.118 -7.355 1 83.59 ? N25 NJO 602 A 1 
HETATM 37 N N30 NJO . . . C 3 -17.688 -23.145 -10.2 1 43.08 ? N30 NJO 602 A 1 
HETATM 38 O O01 NJO . . . C 3 -22.02 -12.8 -9.497 1 148.08 ? O01 NJO 602 A 1 
HETATM 39 O O24 NJO . . . C 3 -22.897 -19.772 -6.256 1 117.93 ? O24 NJO 602 A 1 
HETATM 40 S S14 NJO . . . C 3 -23.134 -16.92 -7.444 1 132.3 ? S14 NJO 602 A 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#