data_7UFD # _model_server_result.job_id IhYi9DdcfCvhTONTMNbkgQ _model_server_result.datetime_utc '2024-11-24 07:58:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7UFD # _exptl.entry_id 7UFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UFD _cell.length_a 77.7 _cell.length_b 102.719 _cell.length_c 129.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -102.719 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N36 T0K . A T0K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 7UFD _atom_sites.fract_transf_matrix[1][1] 0.01287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 T0K A 1 602 700 T0K 058 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -23.68 -31.275 -10.05 1 63.78 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -22.966 -28.502 -13.966 1 52.77 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -22.278 -24.689 -11.07 1 67.17 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -23.708 -27.314 -7.258 1 65.38 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -23.531 -30.862 -11.352 1 63.89 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -23.623 -31.712 -12.516 1 58.01 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -23.423 -30.954 -13.598 1 49.85 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -23.203 -29.591 -13.158 1 50.09 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -23.424 -31.44 -15.062 1 53.83 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -23.887 -33.231 -12.484 1 47.63 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -25.355 -33.502 -12.783 1 49.34 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -25.558 -34.986 -12.899 1 50.42 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -26.509 -35.403 -13.604 1 62.14 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -24.763 -35.753 -12.297 1 68.41 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -22.727 -27.219 -13.527 1 58.22 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -22.486 -26.06 -14.364 1 58.48 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -22.294 -24.999 -13.559 1 55.75 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -22.408 -25.468 -12.194 1 60.1 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -22.475 -26.115 -15.909 1 53.38 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -21.995 -23.515 -13.904 1 54.29 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -21.825 -23.027 -15.137 1 54 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -22.691 -25.037 -9.806 1 73.52 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -22.906 -24.127 -8.705 1 68.85 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -23.299 -24.831 -7.645 1 69.55 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -23.353 -26.233 -8.037 1 67.1 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -22.711 -22.597 -8.747 1 52.25 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -23.624 -24.193 -6.275 1 65.62 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -23.971 -24.916 -5.207 1 89.19 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -23.73 -28.63 -7.664 1 68.86 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -23.819 -29.794 -6.805 1 67.67 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -23.808 -30.883 -7.577 1 67.76 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -23.716 -30.451 -8.952 1 68.1 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -23.903 -29.778 -5.265 1 67.39 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -23.889 -32.35 -7.102 1 50.73 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -25.356 -32.687 -6.862 1 60.12 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -25.496 -34.048 -6.235 1 65.34 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -26.586 -34.33 -5.674 1 55.09 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -24.526 -34.846 -6.287 1 79.83 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -23.278 -29.571 -11.777 1 54.74 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -22.671 -26.822 -12.206 1 58.15 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -22.974 -26.315 -9.365 1 66.73 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -23.669 -29.07 -8.973 1 66.59 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -23.188 -27.941 -10.583 1 64.05 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #