data_7UFD # _model_server_result.job_id VRjAr7zAsmWfGTDBHuByZg _model_server_result.datetime_utc '2024-11-28 01:10:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 7UFD # _exptl.entry_id 7UFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.73 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-3-phenyl-2-({(2S)-3-phenyl-2-[3-(pyridin-3-yl)propanamido]propyl}sulfanyl)-N-[2-(pyridin-3-yl)ethyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UFD _cell.length_a 77.7 _cell.length_b 102.719 _cell.length_c 129.69 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -102.719 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N36 T0K . A T0K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C33 H36 N4 O2 S' _chem_comp.formula_weight 552.73 _chem_comp.id T0K _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-3-phenyl-2-({(2S)-3-phenyl-2-[3-(pyridin-3-yl)propanamido]propyl}sulfanyl)-N-[2-(pyridin-3-yl)ethyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 T0K doub 370 n y C06 C01 T0K sing 371 n y C25 C24 T0K doub 372 n y C25 C26 T0K sing 373 n y C05 N04 T0K sing 374 n y C24 C23 T0K sing 375 n y C26 C22 T0K doub 376 n y C01 C02 T0K doub 377 n y C23 C21 T0K doub 378 n y N04 C03 T0K doub 379 n y C22 C21 T0K sing 380 n y C02 C03 T0K sing 381 n y C02 C07 T0K sing 382 n n C21 C20 T0K sing 383 n n O17 C10 T0K doub 384 n n C37 C38 T0K doub 385 n y C37 N36 T0K sing 386 n y C38 C39 T0K sing 387 n y C08 C07 T0K sing 388 n n C08 N09 T0K sing 389 n n C20 C14 T0K sing 390 n n C10 N09 T0K sing 391 n n C10 C11 T0K sing 392 n n N36 C40 T0K doub 393 n y C39 C34 T0K doub 394 n y C13 C14 T0K sing 395 n n C13 S12 T0K sing 396 n n C14 N15 T0K sing 397 n n C11 S12 T0K sing 398 n n C11 C18 T0K sing 399 n n C40 C34 T0K sing 400 n y N15 C16 T0K sing 401 n n C34 C33 T0K sing 402 n n C18 C19 T0K sing 403 n n C16 O35 T0K doub 404 n n C16 C32 T0K sing 405 n n C32 C33 T0K sing 406 n n C30 C19 T0K doub 407 n y C30 C29 T0K sing 408 n y C19 C31 T0K sing 409 n y C29 C28 T0K doub 410 n y C31 C27 T0K doub 411 n y C28 C27 T0K sing 412 n y C11 H1 T0K sing 413 n n C13 H2 T0K sing 414 n n C13 H3 T0K sing 415 n n C14 H4 T0K sing 416 n n C18 H5 T0K sing 417 n n C18 H6 T0K sing 418 n n C20 H7 T0K sing 419 n n C20 H8 T0K sing 420 n n C22 H9 T0K sing 421 n n C01 H10 T0K sing 422 n n C03 H11 T0K sing 423 n n C05 H12 T0K sing 424 n n C06 H13 T0K sing 425 n n C07 H14 T0K sing 426 n n C07 H15 T0K sing 427 n n C08 H16 T0K sing 428 n n C08 H17 T0K sing 429 n n C23 H18 T0K sing 430 n n C24 H19 T0K sing 431 n n C25 H20 T0K sing 432 n n C26 H21 T0K sing 433 n n C27 H22 T0K sing 434 n n C28 H23 T0K sing 435 n n C29 H24 T0K sing 436 n n C30 H25 T0K sing 437 n n C31 H26 T0K sing 438 n n C32 H27 T0K sing 439 n n C32 H28 T0K sing 440 n n C33 H29 T0K sing 441 n n C33 H30 T0K sing 442 n n C37 H31 T0K sing 443 n n C38 H32 T0K sing 444 n n C39 H33 T0K sing 445 n n C40 H34 T0K sing 446 n n N09 H35 T0K sing 447 n n N15 H36 T0K sing 448 n n # _atom_sites.entry_id 7UFD _atom_sites.fract_transf_matrix[1][1] 0.01287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 T0K A 1 602 700 T0K 058 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 T0K . . . C 3 -15.835 -36.759 -10.392 1 109.57 ? C10 T0K 602 A 1 HETATM 2 C C11 T0K . . . C 3 -16.211 -35.728 -9.309 1 91.91 ? C11 T0K 602 A 1 HETATM 3 C C13 T0K . . . C 3 -19.087 -35.232 -9.952 1 85.45 ? C13 T0K 602 A 1 HETATM 4 C C14 T0K . . . C 3 -19.698 -33.901 -9.458 1 85.73 ? C14 T0K 602 A 1 HETATM 5 C C16 T0K . . . C 3 -19.135 -31.859 -8.07 1 75.5 ? C16 T0K 602 A 1 HETATM 6 C C18 T0K . . . C 3 -15.307 -35.887 -8.073 1 97.77 ? C18 T0K 602 A 1 HETATM 7 C C19 T0K . . . C 3 -15.528 -34.728 -7.08 1 92.84 ? C19 T0K 602 A 1 HETATM 8 C C20 T0K . . . C 3 -20.53 -33.307 -10.616 1 101.74 ? C20 T0K 602 A 1 HETATM 9 C C21 T0K . . . C 3 -19.75 -32.563 -11.726 1 120.73 ? C21 T0K 602 A 1 HETATM 10 C C22 T0K . . . C 3 -18.432 -32.888 -12.089 1 130.88 ? C22 T0K 602 A 1 HETATM 11 C C01 T0K . . . C 3 -13.151 -40.253 -13.091 1 120.17 ? C01 T0K 602 A 1 HETATM 12 C C02 T0K . . . C 3 -13.018 -40.661 -11.753 1 119.65 ? C02 T0K 602 A 1 HETATM 13 C C03 T0K . . . C 3 -12.065 -41.647 -11.454 1 133.23 ? C03 T0K 602 A 1 HETATM 14 C C05 T0K . . . C 3 -11.416 -41.814 -13.682 1 141.22 ? C05 T0K 602 A 1 HETATM 15 C C06 T0K . . . C 3 -12.339 -40.836 -14.078 1 128.66 ? C06 T0K 602 A 1 HETATM 16 C C07 T0K . . . C 3 -13.878 -40.06 -10.62 1 113.58 ? C07 T0K 602 A 1 HETATM 17 C C08 T0K . . . C 3 -14.92 -39.033 -11.101 1 109 ? C08 T0K 602 A 1 HETATM 18 C C23 T0K . . . C 3 -20.398 -31.526 -12.405 1 140.7 ? C23 T0K 602 A 1 HETATM 19 C C24 T0K . . . C 3 -19.75 -30.821 -13.424 1 160.1 ? C24 T0K 602 A 1 HETATM 20 C C25 T0K . . . C 3 -18.436 -31.149 -13.772 1 162.33 ? C25 T0K 602 A 1 HETATM 21 C C26 T0K . . . C 3 -17.775 -32.185 -13.105 1 147.96 ? C26 T0K 602 A 1 HETATM 22 C C27 T0K . . . C 3 -16.606 -33.82 -5.103 1 90.4 ? C27 T0K 602 A 1 HETATM 23 C C28 T0K . . . C 3 -15.923 -32.613 -5.305 1 77.62 ? C28 T0K 602 A 1 HETATM 24 C C29 T0K . . . C 3 -15.046 -32.454 -6.386 1 84.45 ? C29 T0K 602 A 1 HETATM 25 C C30 T0K . . . C 3 -14.852 -33.515 -7.275 1 93.73 ? C30 T0K 602 A 1 HETATM 26 C C31 T0K . . . C 3 -16.406 -34.879 -5.994 1 95.16 ? C31 T0K 602 A 1 HETATM 27 C C32 T0K . . . C 3 -18.165 -30.772 -7.56 1 71.42 ? C32 T0K 602 A 1 HETATM 28 C C33 T0K . . . C 3 -18.81 -29.368 -7.53 1 71.78 ? C33 T0K 602 A 1 HETATM 29 C C34 T0K . . . C 3 -19.356 -28.917 -8.9 1 46 ? C34 T0K 602 A 1 HETATM 30 C C37 T0K . . . C 3 -20.395 -28.107 -11.322 1 58.93 ? C37 T0K 602 A 1 HETATM 31 C C38 T0K . . . C 3 -19.01 -28.258 -11.188 1 55.26 ? C38 T0K 602 A 1 HETATM 32 C C39 T0K . . . C 3 -18.476 -28.668 -9.96 1 45.49 ? C39 T0K 602 A 1 HETATM 33 C C40 T0K . . . C 3 -20.731 -28.745 -9.103 1 62.22 ? C40 T0K 602 A 1 HETATM 34 N N04 T0K . . . C 3 -11.297 -42.194 -12.403 1 145.57 ? N04 T0K 602 A 1 HETATM 35 N N09 T0K . . . C 3 -15.278 -38.079 -10.044 1 110.56 ? N09 T0K 602 A 1 HETATM 36 N N15 T0K . . . C 3 -18.704 -32.907 -9.011 1 84.66 ? N15 T0K 602 A 1 HETATM 37 N N36 T0K . . . C 3 -21.214 -28.351 -10.291 1 66.1 ? N36 T0K 602 A 1 HETATM 38 O O17 T0K . . . C 3 -15.993 -36.438 -11.545 1 124.04 ? O17 T0K 602 A 1 HETATM 39 O O35 T0K . . . C 3 -20.28 -31.859 -7.686 1 69.56 ? O35 T0K 602 A 1 HETATM 40 S S12 T0K . . . C 3 -17.928 -35.962 -8.755 1 91.1 ? S12 T0K 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #