data_7UFE # _model_server_result.job_id 82LJmIXKVBzIk48ov94L-w _model_server_result.datetime_utc '2024-11-22 21:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7UFE # _exptl.entry_id 7UFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.21 _cell.angle_gamma 90 _cell.entry_id 7UFE _cell.length_a 153.617 _cell.length_b 96.749 _cell.length_c 93.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_758 -x+5/2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 225.715238 48.3745 232.88405 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 F N09 NXR . A NXR 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 G FE HEM . B HEM 601 1_555 I N09 NXR . B NXR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 142 n n CHA C4D HEM doub 143 n n CHA HHA HEM sing 144 n n CHB C4A HEM sing 145 n n CHB C1B HEM doub 146 n n CHB HHB HEM sing 147 n n CHC C4B HEM sing 148 n n CHC C1C HEM doub 149 n n CHC HHC HEM sing 150 n n CHD C4C HEM doub 151 n n CHD C1D HEM sing 152 n n CHD HHD HEM sing 153 n n C1A C2A HEM doub 154 n y C1A NA HEM sing 155 n y C2A C3A HEM sing 156 n y C2A CAA HEM sing 157 n n C3A C4A HEM doub 158 n y C3A CMA HEM sing 159 n n C4A NA HEM sing 160 n y CMA HMA HEM sing 161 n n CMA HMAA HEM sing 162 n n CMA HMAB HEM sing 163 n n CAA CBA HEM sing 164 n n CAA HAA HEM sing 165 n n CAA HAAA HEM sing 166 n n CBA CGA HEM sing 167 n n CBA HBA HEM sing 168 n n CBA HBAA HEM sing 169 n n CGA O1A HEM doub 170 n n CGA O2A HEM sing 171 n n C1B C2B HEM sing 172 n n C1B NB HEM sing 173 n n C2B C3B HEM doub 174 n n C2B CMB HEM sing 175 n n C3B C4B HEM sing 176 n n C3B CAB HEM sing 177 n n C4B NB HEM doub 178 n n CMB HMB HEM sing 179 n n CMB HMBA HEM sing 180 n n CMB HMBB HEM sing 181 n n CAB CBB HEM doub 182 n n CAB HAB HEM sing 183 n n CBB HBB HEM sing 184 n n CBB HBBA HEM sing 185 n n C1C C2C HEM sing 186 n y C1C NC HEM sing 187 n y C2C C3C HEM doub 188 n y C2C CMC HEM sing 189 n n C3C C4C HEM sing 190 n y C3C CAC HEM sing 191 n n C4C NC HEM sing 192 n y CMC HMC HEM sing 193 n n CMC HMCA HEM sing 194 n n CMC HMCB HEM sing 195 n n CAC CBC HEM doub 196 n n CAC HAC HEM sing 197 n n CBC HBC HEM sing 198 n n CBC HBCA HEM sing 199 n n C1D C2D HEM sing 200 n n C1D ND HEM doub 201 n n C2D C3D HEM doub 202 n n C2D CMD HEM sing 203 n n C3D C4D HEM sing 204 n n C3D CAD HEM sing 205 n n C4D ND HEM sing 206 n n CMD HMD HEM sing 207 n n CMD HMDA HEM sing 208 n n CMD HMDB HEM sing 209 n n CAD CBD HEM sing 210 n n CAD HAD HEM sing 211 n n CAD HADA HEM sing 212 n n CBD CGD HEM sing 213 n n CBD HBD HEM sing 214 n n CBD HBDA HEM sing 215 n n CGD O1D HEM doub 216 n n CGD O2D HEM sing 217 n n O2A H2A HEM sing 218 n n O2D H2D HEM sing 219 n n FE NA HEM sing 220 n n FE NB HEM sing 221 n n FE NC HEM sing 222 n n FE ND HEM sing 223 n n # _atom_sites.entry_id 7UFE _atom_sites.fract_transf_matrix[1][1] 0.00651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 GOL A 1 602 600 GOL GOL . E 3 GOL A 1 603 601 GOL GOL . F 4 NXR A 1 604 700 NXR 130 . G 2 HEM B 1 601 500 HEM HEM . H 3 GOL B 1 602 600 GOL GOL . I 4 NXR B 1 603 700 NXR 130 . J 5 HOH A 1 701 30 HOH HOH . J 5 HOH A 2 702 2 HOH HOH . J 5 HOH A 3 703 19 HOH HOH . J 5 HOH A 4 704 21 HOH HOH . J 5 HOH A 5 705 33 HOH HOH . J 5 HOH A 6 706 1 HOH HOH . J 5 HOH A 7 707 13 HOH HOH . J 5 HOH A 8 708 20 HOH HOH . J 5 HOH A 9 709 17 HOH HOH . J 5 HOH A 10 710 3 HOH HOH . J 5 HOH A 11 711 4 HOH HOH . J 5 HOH A 12 712 27 HOH HOH . J 5 HOH A 13 713 35 HOH HOH . J 5 HOH A 14 714 50 HOH HOH . J 5 HOH A 15 715 6 HOH HOH . J 5 HOH A 16 716 28 HOH HOH . J 5 HOH A 17 717 16 HOH HOH . J 5 HOH A 18 718 40 HOH HOH . J 5 HOH A 19 719 14 HOH HOH . J 5 HOH A 20 720 39 HOH HOH . J 5 HOH A 21 721 5 HOH HOH . J 5 HOH A 22 722 7 HOH HOH . J 5 HOH A 23 723 51 HOH HOH . J 5 HOH A 24 724 52 HOH HOH . J 5 HOH A 25 725 26 HOH HOH . J 5 HOH A 26 726 11 HOH HOH . J 5 HOH A 27 727 29 HOH HOH . J 5 HOH A 28 728 31 HOH HOH . J 5 HOH A 29 729 22 HOH HOH . J 5 HOH A 30 730 48 HOH HOH . J 5 HOH A 31 731 36 HOH HOH . J 5 HOH A 32 732 25 HOH HOH . J 5 HOH A 33 733 38 HOH HOH . J 5 HOH A 34 734 34 HOH HOH . J 5 HOH A 35 735 23 HOH HOH . J 5 HOH A 36 736 37 HOH HOH . J 5 HOH A 37 737 32 HOH HOH . J 5 HOH A 38 738 24 HOH HOH . K 5 HOH B 1 701 45 HOH HOH . K 5 HOH B 2 702 47 HOH HOH . K 5 HOH B 3 703 10 HOH HOH . K 5 HOH B 4 704 42 HOH HOH . K 5 HOH B 5 705 53 HOH HOH . K 5 HOH B 6 706 9 HOH HOH . K 5 HOH B 7 707 49 HOH HOH . K 5 HOH B 8 708 12 HOH HOH . K 5 HOH B 9 709 43 HOH HOH . K 5 HOH B 10 710 8 HOH HOH . K 5 HOH B 11 711 46 HOH HOH . K 5 HOH B 12 712 41 HOH HOH . K 5 HOH B 13 713 18 HOH HOH . K 5 HOH B 14 714 44 HOH HOH . K 5 HOH B 15 715 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 121.814 -17.256 93.029 1 42.41 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . C 2 125.044 -19.82 90.456 1 49.09 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . C 2 122.56 -23.874 91.412 1 48.24 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . C 2 119.466 -21.357 94.182 1 52.47 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . C 2 122.902 -17.589 92.25 1 37.89 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . C 2 123.906 -16.674 91.744 1 44.18 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . C 2 124.793 -17.379 91.037 1 37.46 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . C 2 124.391 -18.77 91.067 1 49.28 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . C 2 126.034 -16.816 90.313 1 45.92 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . C 2 123.939 -15.148 91.979 1 47.61 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . C 2 124.929 -14.823 93.092 1 54.08 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . C 2 125.061 -13.33 93.235 1 57.77 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . C 2 125.969 -12.878 93.98 1 58.46 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . C 2 124.263 -12.592 92.602 1 49.23 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . C 2 124.672 -21.146 90.508 1 48.1 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . C 2 125.401 -22.259 89.932 1 45.98 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . C 2 124.711 -23.387 90.195 1 45.01 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . C 2 123.529 -23.011 90.947 1 42.32 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . C 2 126.732 -22.091 89.163 1 56.93 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . C 2 125.023 -24.862 89.824 1 48.12 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . C 2 126.13 -25.28 89.201 1 51.16 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . C 2 121.548 -23.567 92.296 1 55.09 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . C 2 120.698 -24.516 92.983 1 58.19 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . C 2 119.84 -23.841 93.752 1 60.98 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . C 2 120.112 -22.42 93.581 1 49.71 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . C 2 120.772 -26.052 92.85 1 56.8 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . C 2 118.768 -24.519 94.641 1 50.79 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . C 2 117.93 -23.831 95.422 1 67.33 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . C 2 119.811 -20.025 94.087 1 50.43 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . C 2 119.099 -18.912 94.683 1 48.64 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . C 2 119.743 -17.787 94.364 1 48.24 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . C 2 120.893 -18.137 93.557 1 46.2 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . C 2 117.816 -19.006 95.535 1 55.34 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . C 2 119.338 -16.362 94.794 1 57.31 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . C 2 120.136 -16.021 96.047 1 41.83 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . C 2 119.518 -14.853 96.767 1 60.03 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . C 2 119.689 -14.764 98.011 1 80.99 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . C 2 118.848 -14.019 96.106 1 69.03 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . C 2 123.233 -18.86 91.817 1 39.4 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . C 2 123.537 -21.642 91.118 1 39.57 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . C 2 121.16 -22.299 92.686 1 37.66 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . C 2 120.901 -19.512 93.408 1 39.97 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . C 2 122.214 -20.583 92.27 1 52.62 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 43 #