data_7UFE # _model_server_result.job_id Nh0xE4kxcZniGZZueZw7YA _model_server_result.datetime_utc '2024-11-22 21:42:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ufe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 7UFE # _exptl.entry_id 7UFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.21 _cell.angle_gamma 90 _cell.entry_id 7UFE _cell.length_a 153.617 _cell.length_b 96.749 _cell.length_c 93.869 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_758 -x+5/2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 225.715238 48.3745 232.88405 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 C FE HEM . A HEM 601 1_555 F N09 NXR . A NXR 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 G FE HEM . B HEM 601 1_555 I N09 NXR . B NXR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7UFE _atom_sites.fract_transf_matrix[1][1] 0.00651 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004426 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 601 500 HEM HEM . D 3 GOL A 1 602 600 GOL GOL . E 3 GOL A 1 603 601 GOL GOL . F 4 NXR A 1 604 700 NXR 130 . G 2 HEM B 1 601 500 HEM HEM . H 3 GOL B 1 602 600 GOL GOL . I 4 NXR B 1 603 700 NXR 130 . J 5 HOH A 1 701 30 HOH HOH . J 5 HOH A 2 702 2 HOH HOH . J 5 HOH A 3 703 19 HOH HOH . J 5 HOH A 4 704 21 HOH HOH . J 5 HOH A 5 705 33 HOH HOH . J 5 HOH A 6 706 1 HOH HOH . J 5 HOH A 7 707 13 HOH HOH . J 5 HOH A 8 708 20 HOH HOH . J 5 HOH A 9 709 17 HOH HOH . J 5 HOH A 10 710 3 HOH HOH . J 5 HOH A 11 711 4 HOH HOH . J 5 HOH A 12 712 27 HOH HOH . J 5 HOH A 13 713 35 HOH HOH . J 5 HOH A 14 714 50 HOH HOH . J 5 HOH A 15 715 6 HOH HOH . J 5 HOH A 16 716 28 HOH HOH . J 5 HOH A 17 717 16 HOH HOH . J 5 HOH A 18 718 40 HOH HOH . J 5 HOH A 19 719 14 HOH HOH . J 5 HOH A 20 720 39 HOH HOH . J 5 HOH A 21 721 5 HOH HOH . J 5 HOH A 22 722 7 HOH HOH . J 5 HOH A 23 723 51 HOH HOH . J 5 HOH A 24 724 52 HOH HOH . J 5 HOH A 25 725 26 HOH HOH . J 5 HOH A 26 726 11 HOH HOH . J 5 HOH A 27 727 29 HOH HOH . J 5 HOH A 28 728 31 HOH HOH . J 5 HOH A 29 729 22 HOH HOH . J 5 HOH A 30 730 48 HOH HOH . J 5 HOH A 31 731 36 HOH HOH . J 5 HOH A 32 732 25 HOH HOH . J 5 HOH A 33 733 38 HOH HOH . J 5 HOH A 34 734 34 HOH HOH . J 5 HOH A 35 735 23 HOH HOH . J 5 HOH A 36 736 37 HOH HOH . J 5 HOH A 37 737 32 HOH HOH . J 5 HOH A 38 738 24 HOH HOH . K 5 HOH B 1 701 45 HOH HOH . K 5 HOH B 2 702 47 HOH HOH . K 5 HOH B 3 703 10 HOH HOH . K 5 HOH B 4 704 42 HOH HOH . K 5 HOH B 5 705 53 HOH HOH . K 5 HOH B 6 706 9 HOH HOH . K 5 HOH B 7 707 49 HOH HOH . K 5 HOH B 8 708 12 HOH HOH . K 5 HOH B 9 709 43 HOH HOH . K 5 HOH B 10 710 8 HOH HOH . K 5 HOH B 11 711 46 HOH HOH . K 5 HOH B 12 712 41 HOH HOH . K 5 HOH B 13 713 18 HOH HOH . K 5 HOH B 14 714 44 HOH HOH . K 5 HOH B 15 715 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 140.875 -26.495 74.182 1 97.11 ? C1 GOL 603 A 1 HETATM 2 O O1 GOL . . . E 3 140.169 -26.447 75.402 1 103.55 ? O1 GOL 603 A 1 HETATM 3 C C2 GOL . . . E 3 141.844 -27.67 74.204 1 112.16 ? C2 GOL 603 A 1 HETATM 4 O O2 GOL . . . E 3 141.155 -28.857 74.526 1 113.84 ? O2 GOL 603 A 1 HETATM 5 C C3 GOL . . . E 3 142.925 -27.404 75.244 1 119.21 ? C3 GOL 603 A 1 HETATM 6 O O3 GOL . . . E 3 142.325 -27.28 76.514 1 118.16 ? O3 GOL 603 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #