data_7UFE
#
_model_server_result.job_id            ZxKzm-TbqKWVbmasMTEHrA 
_model_server_result.datetime_utc      '2024-10-11 02:17:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ufe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":604}' 
#
_entry.id    7UFE 
#
_exptl.entry_id    7UFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.703 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]pyridine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.21 
_cell.angle_gamma         90 
_cell.entry_id            7UFE 
_cell.length_a            153.617 
_cell.length_b            96.749 
_cell.length_c            93.869 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1 
B,G,H,I,K 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_758 -x+5/2,y+1/2,-z+3 -1 0 0 0 1 0 0 0 -1 225.715238 48.3745 232.88405 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 C FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc2 C FE HEM . A HEM 601 1_555 F N09 NXR . A NXR 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc3 B SG CYS 422 B CYS 442 1_555 G FE HEM . B HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 G FE HEM . B HEM 601 1_555 I N09 NXR . B NXR 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
#
_chem_comp.formula           'C32 H34 N4 O2 S' 
_chem_comp.formula_weight    538.703 
_chem_comp.id                NXR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(2S)-1-{[(2R)-1-oxo-3-phenyl-1-{[3-(pyridin-3-yl)propyl]amino}propan-2-yl]sulfanyl}-3-phenylpropan-2-yl]pyridine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C36 C37 NXR doub 332 n y 
C36 C35 NXR sing 333 n y 
C37 N38 NXR sing 334 n y 
C35 C34 NXR doub 335 n y 
N38 C39 NXR doub 336 n y 
C34 C39 NXR sing 337 n y 
C34 C32 NXR sing 338 n n 
O33 C32 NXR doub 339 n n 
C32 N31 NXR sing 340 n n 
C17 C16 NXR doub 341 n y 
C17 C18 NXR sing 342 n y 
C16 C15 NXR sing 343 n y 
C18 C19 NXR doub 344 n y 
N31 C23 NXR sing 345 n n 
C15 C14 NXR sing 346 n n 
C15 C20 NXR doub 347 n y 
C14 C13 NXR sing 348 n n 
C13 S21 NXR sing 349 n n 
C13 C02 NXR sing 350 n n 
C23 C24 NXR sing 351 n n 
C23 C22 NXR sing 352 n n 
C19 C20 NXR sing 353 n y 
S21 C22 NXR sing 354 n n 
C24 C25 NXR sing 355 n n 
C26 C27 NXR doub 356 n y 
C26 C25 NXR sing 357 n y 
C12 C11 NXR doub 358 n y 
C12 C07 NXR sing 359 n y 
C11 C10 NXR sing 360 n y 
N03 C02 NXR sing 361 n n 
N03 C04 NXR sing 362 n n 
C02 O01 NXR doub 363 n n 
C27 C28 NXR sing 364 n y 
C25 C30 NXR doub 365 n y 
C06 C07 NXR sing 366 n n 
C06 C05 NXR sing 367 n n 
C07 C08 NXR doub 368 n y 
C04 C05 NXR sing 369 n n 
C10 N09 NXR doub 370 n y 
C28 C29 NXR doub 371 n y 
C30 C29 NXR sing 372 n y 
C08 N09 NXR sing 373 n y 
C04 H1 NXR sing 374 n n 
C04 H2 NXR sing 375 n n 
C05 H3 NXR sing 376 n n 
C05 H4 NXR sing 377 n n 
C06 H5 NXR sing 378 n n 
C06 H6 NXR sing 379 n n 
C08 H7 NXR sing 380 n n 
C10 H8 NXR sing 381 n n 
C11 H9 NXR sing 382 n n 
C12 H10 NXR sing 383 n n 
C13 H11 NXR sing 384 n n 
C14 H12 NXR sing 385 n n 
C14 H13 NXR sing 386 n n 
C16 H14 NXR sing 387 n n 
C17 H15 NXR sing 388 n n 
C18 H16 NXR sing 389 n n 
C19 H17 NXR sing 390 n n 
C20 H18 NXR sing 391 n n 
C22 H19 NXR sing 392 n n 
C22 H20 NXR sing 393 n n 
C23 H21 NXR sing 394 n n 
C24 H22 NXR sing 395 n n 
C24 H23 NXR sing 396 n n 
C26 H24 NXR sing 397 n n 
C27 H25 NXR sing 398 n n 
C28 H26 NXR sing 399 n n 
C29 H27 NXR sing 400 n n 
C30 H28 NXR sing 401 n n 
C35 H29 NXR sing 402 n n 
C36 H30 NXR sing 403 n n 
C37 H31 NXR sing 404 n n 
C39 H32 NXR sing 405 n n 
N03 H33 NXR sing 406 n n 
N31 H34 NXR sing 407 n n 
#
_atom_sites.entry_id                     7UFE 
_atom_sites.fract_transf_matrix[1][1]    0.00651 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004426 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010336 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012882 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 601 500 HEM HEM . 
D 3 GOL A 1 602 600 GOL GOL . 
E 3 GOL A 1 603 601 GOL GOL . 
F 4 NXR A 1 604 700 NXR 130 . 
G 2 HEM B 1 601 500 HEM HEM . 
H 3 GOL B 1 602 600 GOL GOL . 
I 4 NXR B 1 603 700 NXR 130 . 
J 5 HOH A 1 701 30 HOH HOH . 
J 5 HOH A 2 702 2 HOH HOH . 
J 5 HOH A 3 703 19 HOH HOH . 
J 5 HOH A 4 704 21 HOH HOH . 
J 5 HOH A 5 705 33 HOH HOH . 
J 5 HOH A 6 706 1 HOH HOH . 
J 5 HOH A 7 707 13 HOH HOH . 
J 5 HOH A 8 708 20 HOH HOH . 
J 5 HOH A 9 709 17 HOH HOH . 
J 5 HOH A 10 710 3 HOH HOH . 
J 5 HOH A 11 711 4 HOH HOH . 
J 5 HOH A 12 712 27 HOH HOH . 
J 5 HOH A 13 713 35 HOH HOH . 
J 5 HOH A 14 714 50 HOH HOH . 
J 5 HOH A 15 715 6 HOH HOH . 
J 5 HOH A 16 716 28 HOH HOH . 
J 5 HOH A 17 717 16 HOH HOH . 
J 5 HOH A 18 718 40 HOH HOH . 
J 5 HOH A 19 719 14 HOH HOH . 
J 5 HOH A 20 720 39 HOH HOH . 
J 5 HOH A 21 721 5 HOH HOH . 
J 5 HOH A 22 722 7 HOH HOH . 
J 5 HOH A 23 723 51 HOH HOH . 
J 5 HOH A 24 724 52 HOH HOH . 
J 5 HOH A 25 725 26 HOH HOH . 
J 5 HOH A 26 726 11 HOH HOH . 
J 5 HOH A 27 727 29 HOH HOH . 
J 5 HOH A 28 728 31 HOH HOH . 
J 5 HOH A 29 729 22 HOH HOH . 
J 5 HOH A 30 730 48 HOH HOH . 
J 5 HOH A 31 731 36 HOH HOH . 
J 5 HOH A 32 732 25 HOH HOH . 
J 5 HOH A 33 733 38 HOH HOH . 
J 5 HOH A 34 734 34 HOH HOH . 
J 5 HOH A 35 735 23 HOH HOH . 
J 5 HOH A 36 736 37 HOH HOH . 
J 5 HOH A 37 737 32 HOH HOH . 
J 5 HOH A 38 738 24 HOH HOH . 
K 5 HOH B 1 701 45 HOH HOH . 
K 5 HOH B 2 702 47 HOH HOH . 
K 5 HOH B 3 703 10 HOH HOH . 
K 5 HOH B 4 704 42 HOH HOH . 
K 5 HOH B 5 705 53 HOH HOH . 
K 5 HOH B 6 706 9 HOH HOH . 
K 5 HOH B 7 707 49 HOH HOH . 
K 5 HOH B 8 708 12 HOH HOH . 
K 5 HOH B 9 709 43 HOH HOH . 
K 5 HOH B 10 710 8 HOH HOH . 
K 5 HOH B 11 711 46 HOH HOH . 
K 5 HOH B 12 712 41 HOH HOH . 
K 5 HOH B 13 713 18 HOH HOH . 
K 5 HOH B 14 714 44 HOH HOH . 
K 5 HOH B 15 715 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 NXR . . . F 4 115.503 -15.9 88.429 1 66.51 ? C02 NXR 604 A 1 
HETATM 2 C C04 NXR . . . F 4 117.237 -17.503 89.482 1 63.52 ? C04 NXR 604 A 1 
HETATM 3 C C05 NXR . . . F 4 116.507 -18.824 89.731 1 59.68 ? C05 NXR 604 A 1 
HETATM 4 C C06 NXR . . . F 4 117.265 -20.09 89.35 1 51.8 ? C06 NXR 604 A 1 
HETATM 5 C C07 NXR . . . F 4 118.805 -20.006 89.351 1 63.4 ? C07 NXR 604 A 1 
HETATM 6 C C08 NXR . . . F 4 119.527 -20.136 90.546 1 63.13 ? C08 NXR 604 A 1 
HETATM 7 C C10 NXR . . . F 4 121.583 -19.903 89.551 1 68.34 ? C10 NXR 604 A 1 
HETATM 8 C C11 NXR . . . F 4 120.989 -19.757 88.291 1 64.97 ? C11 NXR 604 A 1 
HETATM 9 C C12 NXR . . . F 4 119.596 -19.811 88.208 1 56.08 ? C12 NXR 604 A 1 
HETATM 10 C C13 NXR . . . F 4 114.999 -15.068 87.26 1 67.64 ? C13 NXR 604 A 1 
HETATM 11 C C14 NXR . . . F 4 113.59 -15.478 86.807 1 61.84 ? C14 NXR 604 A 1 
HETATM 12 C C15 NXR . . . F 4 113.319 -16.984 86.644 1 76.56 ? C15 NXR 604 A 1 
HETATM 13 C C16 NXR . . . F 4 113.816 -17.726 85.562 1 81.3 ? C16 NXR 604 A 1 
HETATM 14 C C17 NXR . . . F 4 113.581 -19.101 85.43 1 81.98 ? C17 NXR 604 A 1 
HETATM 15 C C18 NXR . . . F 4 112.838 -19.791 86.393 1 86.97 ? C18 NXR 604 A 1 
HETATM 16 C C19 NXR . . . F 4 112.341 -19.075 87.486 1 79.9 ? C19 NXR 604 A 1 
HETATM 17 C C20 NXR . . . F 4 112.589 -17.703 87.601 1 72.43 ? C20 NXR 604 A 1 
HETATM 18 C C22 NXR . . . F 4 116.598 -12.77 88.375 1 66.92 ? C22 NXR 604 A 1 
HETATM 19 C C23 NXR . . . F 4 117.677 -12.686 87.299 1 71.08 ? C23 NXR 604 A 1 
HETATM 20 C C24 NXR . . . F 4 119.077 -12.627 87.922 1 74.31 ? C24 NXR 604 A 1 
HETATM 21 C C25 NXR . . . F 4 119.548 -13.887 88.67 1 78.68 ? C25 NXR 604 A 1 
HETATM 22 C C26 NXR . . . F 4 120.162 -14.944 87.988 1 79.29 ? C26 NXR 604 A 1 
HETATM 23 C C27 NXR . . . F 4 120.604 -16.101 88.64 1 85.61 ? C27 NXR 604 A 1 
HETATM 24 C C28 NXR . . . F 4 120.445 -16.242 90.024 1 81.62 ? C28 NXR 604 A 1 
HETATM 25 C C29 NXR . . . F 4 119.834 -15.2 90.73 1 70.75 ? C29 NXR 604 A 1 
HETATM 26 C C30 NXR . . . F 4 119.399 -14.05 90.059 1 77.27 ? C30 NXR 604 A 1 
HETATM 27 C C32 NXR . . . F 4 117.818 -11.362 85.047 1 95.63 ? C32 NXR 604 A 1 
HETATM 28 C C34 NXR . . . F 4 117.524 -10.113 84.195 1 105.36 ? C34 NXR 604 A 1 
HETATM 29 C C35 NXR . . . F 4 117.967 -9.924 82.882 1 120.32 ? C35 NXR 604 A 1 
HETATM 30 C C36 NXR . . . F 4 117.666 -8.762 82.164 1 119.92 ? C36 NXR 604 A 1 
HETATM 31 C C37 NXR . . . F 4 116.901 -7.778 82.8 1 116.78 ? C37 NXR 604 A 1 
HETATM 32 C C39 NXR . . . F 4 116.773 -9.049 84.713 1 101.4 ? C39 NXR 604 A 1 
HETATM 33 N N03 NXR . . . F 4 116.721 -16.689 88.389 1 62.12 ? N03 NXR 604 A 1 
HETATM 34 N N09 NXR . . . F 4 120.86 -20.09 90.666 1 66 ? N09 NXR 604 A 1 
HETATM 35 N N31 NXR . . . F 4 117.415 -11.532 86.446 1 85.29 ? N31 NXR 604 A 1 
HETATM 36 N N38 NXR . . . F 4 116.46 -7.921 84.058 1 107.44 ? N38 NXR 604 A 1 
HETATM 37 O O01 NXR . . . F 4 114.881 -15.924 89.462 1 68.67 ? O01 NXR 604 A 1 
HETATM 38 O O33 NXR . . . F 4 118.424 -12.273 84.532 1 91.44 ? O33 NXR 604 A 1 
HETATM 39 S S21 NXR . . . F 4 115.006 -13.326 87.735 1 74.45 ? S21 NXR 604 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           39 
#