data_7UGF # _model_server_result.job_id ZpwPyoQjZilbl44h4xAi1Q _model_server_result.datetime_utc '2024-10-19 03:50:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ugf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7UGF # _exptl.entry_id 7UGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UGF _cell.length_a 37.4 _cell.length_b 44.26 _cell.length_c 78.64 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H26 Cl N5 O3' _chem_comp.formula_weight 479.959 _chem_comp.id N6I _chem_comp.mon_nstd_flag . _chem_comp.name (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C09 N6I sing 246 n n C12 C13 N6I doub 247 n y C12 C11 N6I sing 248 n y C09 C11 N6I sing 249 n n C09 C08 N6I sing 250 n n C13 C14 N6I sing 251 n y C11 C17 N6I doub 252 n y C08 N07 N6I sing 253 n n C14 C15 N6I doub 254 n y C17 C15 N6I sing 255 n y C15 CL16 N6I sing 256 n n N07 C06 N6I sing 257 n n C05 C06 N6I sing 258 n n C05 C04 N6I doub 259 n n C06 C18 N6I doub 260 n n C32 C31 N6I sing 261 n n C04 N03 N6I sing 262 n n N34 C19 N6I doub 263 n y N34 C33 N6I sing 264 n y C18 C19 N6I sing 265 n n C18 C02 N6I sing 266 n n C31 C33 N6I doub 267 n y C31 C30 N6I sing 268 n y C19 N20 N6I sing 269 n y N03 C02 N6I sing 270 n n C33 C21 N6I sing 271 n y C02 O01 N6I doub 272 n n C30 C23 N6I doub 273 n y N20 C21 N6I sing 274 n y C21 C22 N6I doub 275 n y C23 C22 N6I sing 276 n y C23 N24 N6I sing 277 n n N24 C29 N6I sing 278 n n N24 C25 N6I sing 279 n n C29 C28 N6I sing 280 n n C25 C26 N6I sing 281 n n C28 O27 N6I sing 282 n n C26 O27 N6I sing 283 n n C12 H1 N6I sing 284 n n C13 H2 N6I sing 285 n n C14 H3 N6I sing 286 n n C17 H4 N6I sing 287 n n C22 H5 N6I sing 288 n n C25 H6 N6I sing 289 n n C25 H7 N6I sing 290 n n C26 H8 N6I sing 291 n n C26 H9 N6I sing 292 n n C28 H10 N6I sing 293 n n C28 H11 N6I sing 294 n n C29 H12 N6I sing 295 n n C29 H13 N6I sing 296 n n C04 H14 N6I sing 297 n n C05 H15 N6I sing 298 n n C08 H16 N6I sing 299 n n C08 H17 N6I sing 300 n n C09 H18 N6I sing 301 n n C30 H19 N6I sing 302 n n C32 H20 N6I sing 303 n n C32 H21 N6I sing 304 n n C32 H22 N6I sing 305 n n N03 H23 N6I sing 306 n n N07 H24 N6I sing 307 n n N20 H25 N6I sing 308 n n O10 H27 N6I sing 309 n n # _atom_sites.entry_id 7UGF _atom_sites.fract_transf_matrix[1][1] 0.026738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N6I A 1 201 1 N6I LIG . C 3 EDO A 1 202 401 EDO EDO . D 3 EDO A 1 203 501 EDO EDO . E 3 EDO A 1 204 601 EDO EDO . F 3 EDO A 1 205 801 EDO EDO . G 3 EDO A 1 206 901 EDO EDO . H 4 HOH A 1 301 77 HOH HOH . H 4 HOH A 2 302 130 HOH HOH . H 4 HOH A 3 303 83 HOH HOH . H 4 HOH A 4 304 149 HOH HOH . H 4 HOH A 5 305 60 HOH HOH . H 4 HOH A 6 306 63 HOH HOH . H 4 HOH A 7 307 70 HOH HOH . H 4 HOH A 8 308 97 HOH HOH . H 4 HOH A 9 309 109 HOH HOH . H 4 HOH A 10 310 45 HOH HOH . H 4 HOH A 11 311 41 HOH HOH . H 4 HOH A 12 312 62 HOH HOH . H 4 HOH A 13 313 5 HOH HOH . H 4 HOH A 14 314 85 HOH HOH . H 4 HOH A 15 315 120 HOH HOH . H 4 HOH A 16 316 147 HOH HOH . H 4 HOH A 17 317 96 HOH HOH . H 4 HOH A 18 318 53 HOH HOH . H 4 HOH A 19 319 84 HOH HOH . H 4 HOH A 20 320 111 HOH HOH . H 4 HOH A 21 321 91 HOH HOH . H 4 HOH A 22 322 37 HOH HOH . H 4 HOH A 23 323 52 HOH HOH . H 4 HOH A 24 324 117 HOH HOH . H 4 HOH A 25 325 22 HOH HOH . H 4 HOH A 26 326 44 HOH HOH . H 4 HOH A 27 327 71 HOH HOH . H 4 HOH A 28 328 40 HOH HOH . H 4 HOH A 29 329 73 HOH HOH . H 4 HOH A 30 330 29 HOH HOH . H 4 HOH A 31 331 16 HOH HOH . H 4 HOH A 32 332 21 HOH HOH . H 4 HOH A 33 333 14 HOH HOH . H 4 HOH A 34 334 81 HOH HOH . H 4 HOH A 35 335 26 HOH HOH . H 4 HOH A 36 336 34 HOH HOH . H 4 HOH A 37 337 110 HOH HOH . H 4 HOH A 38 338 64 HOH HOH . H 4 HOH A 39 339 10 HOH HOH . H 4 HOH A 40 340 1 HOH HOH . H 4 HOH A 41 341 124 HOH HOH . H 4 HOH A 42 342 49 HOH HOH . H 4 HOH A 43 343 3 HOH HOH . H 4 HOH A 44 344 131 HOH HOH . H 4 HOH A 45 345 13 HOH HOH . H 4 HOH A 46 346 2 HOH HOH . H 4 HOH A 47 347 38 HOH HOH . H 4 HOH A 48 348 28 HOH HOH . H 4 HOH A 49 349 113 HOH HOH . H 4 HOH A 50 350 74 HOH HOH . H 4 HOH A 51 351 95 HOH HOH . H 4 HOH A 52 352 148 HOH HOH . H 4 HOH A 53 353 25 HOH HOH . H 4 HOH A 54 354 48 HOH HOH . H 4 HOH A 55 355 23 HOH HOH . H 4 HOH A 56 356 17 HOH HOH . H 4 HOH A 57 357 123 HOH HOH . H 4 HOH A 58 358 61 HOH HOH . H 4 HOH A 59 359 30 HOH HOH . H 4 HOH A 60 360 67 HOH HOH . H 4 HOH A 61 361 114 HOH HOH . H 4 HOH A 62 362 103 HOH HOH . H 4 HOH A 63 363 59 HOH HOH . H 4 HOH A 64 364 51 HOH HOH . H 4 HOH A 65 365 7 HOH HOH . H 4 HOH A 66 366 82 HOH HOH . H 4 HOH A 67 367 11 HOH HOH . H 4 HOH A 68 368 80 HOH HOH . H 4 HOH A 69 369 32 HOH HOH . H 4 HOH A 70 370 134 HOH HOH . H 4 HOH A 71 371 75 HOH HOH . H 4 HOH A 72 372 6 HOH HOH . H 4 HOH A 73 373 93 HOH HOH . H 4 HOH A 74 374 57 HOH HOH . H 4 HOH A 75 375 68 HOH HOH . H 4 HOH A 76 376 94 HOH HOH . H 4 HOH A 77 377 8 HOH HOH . H 4 HOH A 78 378 47 HOH HOH . H 4 HOH A 79 379 33 HOH HOH . H 4 HOH A 80 380 42 HOH HOH . H 4 HOH A 81 381 39 HOH HOH . H 4 HOH A 82 382 46 HOH HOH . H 4 HOH A 83 383 12 HOH HOH . H 4 HOH A 84 384 20 HOH HOH . H 4 HOH A 85 385 31 HOH HOH . H 4 HOH A 86 386 92 HOH HOH . H 4 HOH A 87 387 35 HOH HOH . H 4 HOH A 88 388 43 HOH HOH . H 4 HOH A 89 389 65 HOH HOH . H 4 HOH A 90 390 121 HOH HOH . H 4 HOH A 91 391 54 HOH HOH . H 4 HOH A 92 392 86 HOH HOH . H 4 HOH A 93 393 90 HOH HOH . H 4 HOH A 94 394 128 HOH HOH . H 4 HOH A 95 395 105 HOH HOH . H 4 HOH A 96 396 108 HOH HOH . H 4 HOH A 97 397 27 HOH HOH . H 4 HOH A 98 398 125 HOH HOH . H 4 HOH A 99 399 24 HOH HOH . H 4 HOH A 100 400 133 HOH HOH . H 4 HOH A 101 401 19 HOH HOH . H 4 HOH A 102 402 137 HOH HOH . H 4 HOH A 103 403 115 HOH HOH . H 4 HOH A 104 404 151 HOH HOH . H 4 HOH A 105 405 76 HOH HOH . H 4 HOH A 106 406 87 HOH HOH . H 4 HOH A 107 407 152 HOH HOH . H 4 HOH A 108 408 119 HOH HOH . H 4 HOH A 109 409 140 HOH HOH . H 4 HOH A 110 410 56 HOH HOH . H 4 HOH A 111 411 127 HOH HOH . H 4 HOH A 112 412 104 HOH HOH . H 4 HOH A 113 413 18 HOH HOH . H 4 HOH A 114 414 50 HOH HOH . H 4 HOH A 115 415 122 HOH HOH . H 4 HOH A 116 416 150 HOH HOH . H 4 HOH A 117 417 132 HOH HOH . H 4 HOH A 118 418 118 HOH HOH . H 4 HOH A 119 419 116 HOH HOH . H 4 HOH A 120 420 153 HOH HOH . H 4 HOH A 121 421 9 HOH HOH . H 4 HOH A 122 422 100 HOH HOH . H 4 HOH A 123 423 89 HOH HOH . H 4 HOH A 124 424 79 HOH HOH . H 4 HOH A 125 425 15 HOH HOH . H 4 HOH A 126 426 107 HOH HOH . H 4 HOH A 127 427 88 HOH HOH . H 4 HOH A 128 428 101 HOH HOH . H 4 HOH A 129 429 143 HOH HOH . H 4 HOH A 130 430 141 HOH HOH . H 4 HOH A 131 431 36 HOH HOH . H 4 HOH A 132 432 55 HOH HOH . H 4 HOH A 133 433 98 HOH HOH . H 4 HOH A 134 434 99 HOH HOH . H 4 HOH A 135 435 144 HOH HOH . H 4 HOH A 136 436 102 HOH HOH . H 4 HOH A 137 437 112 HOH HOH . H 4 HOH A 138 438 136 HOH HOH . H 4 HOH A 139 439 58 HOH HOH . H 4 HOH A 140 440 66 HOH HOH . H 4 HOH A 141 441 106 HOH HOH . H 4 HOH A 142 442 135 HOH HOH . H 4 HOH A 143 443 138 HOH HOH . H 4 HOH A 144 444 129 HOH HOH . H 4 HOH A 145 445 145 HOH HOH . H 4 HOH A 146 446 78 HOH HOH . H 4 HOH A 147 447 72 HOH HOH . H 4 HOH A 148 448 142 HOH HOH . H 4 HOH A 149 449 126 HOH HOH . H 4 HOH A 150 450 69 HOH HOH . H 4 HOH A 151 451 146 HOH HOH . H 4 HOH A 152 452 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 N6I . . . B 2 8.626 -7.44 -2.926 1 29.76 ? C11 N6I 201 A 1 HETATM 2 C C12 N6I . . . B 2 9.117 -8.353 -3.849 1 32.25 ? C12 N6I 201 A 1 HETATM 3 C C13 N6I . . . B 2 9.369 -7.959 -5.154 1 35.12 ? C13 N6I 201 A 1 HETATM 4 C C14 N6I . . . B 2 9.128 -6.648 -5.537 1 33.71 ? C14 N6I 201 A 1 HETATM 5 C C15 N6I . . . B 2 8.637 -5.754 -4.6 1 28.01 ? C15 N6I 201 A 1 HETATM 6 C C17 N6I . . . B 2 8.385 -6.137 -3.302 1 28.22 ? C17 N6I 201 A 1 HETATM 7 C C18 N6I . . . B 2 12.917 -6.38 -0.852 1 19.55 ? C18 N6I 201 A 1 HETATM 8 C C19 N6I . . . B 2 13.271 -7.389 -1.93 1 22.32 ? C19 N6I 201 A 1 HETATM 9 C C21 N6I . . . B 2 14.367 -8.421 -3.488 1 19.28 ? C21 N6I 201 A 1 HETATM 10 C C22 N6I . . . B 2 15.32 -8.865 -4.445 1 23.03 ? C22 N6I 201 A 1 HETATM 11 C C23 N6I . . . B 2 15.008 -9.978 -5.209 1 30.65 ? C23 N6I 201 A 1 HETATM 12 C C25 N6I . . . B 2 16.422 -11.837 -6.13 1 41.85 ? C25 N6I 201 A 1 HETATM 13 C C26 N6I . . . B 2 17.283 -12.282 -7.312 1 47.04 ? C26 N6I 201 A 1 HETATM 14 C C28 N6I . . . B 2 16.726 -10.51 -8.618 1 44.04 ? C28 N6I 201 A 1 HETATM 15 C C29 N6I . . . B 2 15.713 -10.024 -7.586 1 43.45 ? C29 N6I 201 A 1 HETATM 16 C C02 N6I . . . B 2 14.009 -5.477 -0.296 1 25.03 ? C02 N6I 201 A 1 HETATM 17 C C04 N6I . . . B 2 12.277 -4.375 1.258 1 23.33 ? C04 N6I 201 A 1 HETATM 18 C C05 N6I . . . B 2 11.183 -5.281 0.71 1 22.65 ? C05 N6I 201 A 1 HETATM 19 C C06 N6I . . . B 2 11.522 -6.264 -0.345 1 20.15 ? C06 N6I 201 A 1 HETATM 20 C C08 N6I . . . B 2 9.086 -6.908 -0.556 1 20.65 ? C08 N6I 201 A 1 HETATM 21 C C09 N6I . . . B 2 8.34 -7.854 -1.489 1 25.4 ? C09 N6I 201 A 1 HETATM 22 C C30 N6I . . . B 2 13.788 -10.644 -5.043 1 23.08 ? C30 N6I 201 A 1 HETATM 23 C C31 N6I . . . B 2 12.862 -10.205 -4.108 1 27.32 ? C31 N6I 201 A 1 HETATM 24 C C32 N6I . . . B 2 11.537 -10.952 -3.929 1 26.59 ? C32 N6I 201 A 1 HETATM 25 C C33 N6I . . . B 2 13.18 -9.062 -3.326 1 22.67 ? C33 N6I 201 A 1 HETATM 26 N N03 N6I . . . B 2 13.664 -4.493 0.743 1 24.07 ? N03 N6I 201 A 1 HETATM 27 N N07 N6I . . . B 2 10.487 -7.12 -0.866 1 24.1 ? N07 N6I 201 A 1 HETATM 28 N N20 N6I . . . B 2 14.414 -7.384 -2.618 1 20.44 ? N20 N6I 201 A 1 HETATM 29 N N24 N6I . . . B 2 15.964 -10.441 -6.197 1 36.23 ? N24 N6I 201 A 1 HETATM 30 N N34 N6I . . . B 2 12.502 -8.402 -2.352 1 20.95 ? N34 N6I 201 A 1 HETATM 31 O O01 N6I . . . B 2 15.13 -5.549 -0.686 1 22.17 ? O01 N6I 201 A 1 HETATM 32 O O10 N6I . . . B 2 6.961 -7.826 -1.245 1 29.52 ? O10 N6I 201 A 1 HETATM 33 O O27 N6I . . . B 2 17.767 -11.204 -8.031 1 51.46 ? O27 N6I 201 A 1 HETATM 34 CL CL16 N6I . . . B 2 8.311 -4.066 -5.03 1 33.53 ? CL16 N6I 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #