data_7UGI # _model_server_result.job_id Q7wnPldLn3pw3xrkkFMBNw _model_server_result.datetime_utc '2024-11-13 17:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ugi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 7UGI # _exptl.entry_id 7UGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 479.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UGI _cell.length_a 43.23 _cell.length_b 43.23 _cell.length_c 270.89 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,O 1 1 B,L,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 L N N # _chem_comp.formula 'C25 H26 Cl N5 O3' _chem_comp.formula_weight 479.959 _chem_comp.id N6I _chem_comp.mon_nstd_flag . _chem_comp.name (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 C09 N6I sing 225 n n C12 C13 N6I doub 226 n y C12 C11 N6I sing 227 n y C09 C11 N6I sing 228 n n C09 C08 N6I sing 229 n n C13 C14 N6I sing 230 n y C11 C17 N6I doub 231 n y C08 N07 N6I sing 232 n n C14 C15 N6I doub 233 n y C17 C15 N6I sing 234 n y C15 CL16 N6I sing 235 n n N07 C06 N6I sing 236 n n C05 C06 N6I sing 237 n n C05 C04 N6I doub 238 n n C06 C18 N6I doub 239 n n C32 C31 N6I sing 240 n n C04 N03 N6I sing 241 n n N34 C19 N6I doub 242 n y N34 C33 N6I sing 243 n y C18 C19 N6I sing 244 n n C18 C02 N6I sing 245 n n C31 C33 N6I doub 246 n y C31 C30 N6I sing 247 n y C19 N20 N6I sing 248 n y N03 C02 N6I sing 249 n n C33 C21 N6I sing 250 n y C02 O01 N6I doub 251 n n C30 C23 N6I doub 252 n y N20 C21 N6I sing 253 n y C21 C22 N6I doub 254 n y C23 C22 N6I sing 255 n y C23 N24 N6I sing 256 n n N24 C29 N6I sing 257 n n N24 C25 N6I sing 258 n n C29 C28 N6I sing 259 n n C25 C26 N6I sing 260 n n C28 O27 N6I sing 261 n n C26 O27 N6I sing 262 n n C12 H1 N6I sing 263 n n C13 H2 N6I sing 264 n n C14 H3 N6I sing 265 n n C17 H4 N6I sing 266 n n C22 H5 N6I sing 267 n n C25 H6 N6I sing 268 n n C25 H7 N6I sing 269 n n C26 H8 N6I sing 270 n n C26 H9 N6I sing 271 n n C28 H10 N6I sing 272 n n C28 H11 N6I sing 273 n n C29 H12 N6I sing 274 n n C29 H13 N6I sing 275 n n C04 H14 N6I sing 276 n n C05 H15 N6I sing 277 n n C08 H16 N6I sing 278 n n C08 H17 N6I sing 279 n n C09 H18 N6I sing 280 n n C30 H19 N6I sing 281 n n C32 H20 N6I sing 282 n n C32 H21 N6I sing 283 n n C32 H22 N6I sing 284 n n N03 H23 N6I sing 285 n n N07 H24 N6I sing 286 n n N20 H25 N6I sing 287 n n O10 H27 N6I sing 288 n n # _atom_sites.entry_id 7UGI _atom_sites.fract_transf_matrix[1][1] 0.023132 _atom_sites.fract_transf_matrix[1][2] 0.013355 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 N6I A 1 1201 1 N6I N6I . D 3 PE5 A 1 1202 1 PE5 PE5 . E 4 EDO A 1 1203 1 EDO EDO . F 4 EDO A 1 1204 2 EDO EDO . G 4 EDO A 1 1205 4 EDO EDO . H 4 EDO A 1 1206 5 EDO EDO . I 4 EDO A 1 1207 6 EDO EDO . J 4 EDO A 1 1208 7 EDO EDO . K 4 EDO A 1 1209 8 EDO EDO . L 2 N6I B 1 1201 2 N6I N6I . M 4 EDO B 1 1202 3 EDO EDO . N 4 EDO B 1 1203 9 EDO EDO . O 5 HOH A 1 1301 69 HOH HOH . O 5 HOH A 2 1302 104 HOH HOH . O 5 HOH A 3 1303 66 HOH HOH . O 5 HOH A 4 1304 100 HOH HOH . O 5 HOH A 5 1305 13 HOH HOH . O 5 HOH A 6 1306 12 HOH HOH . O 5 HOH A 7 1307 10 HOH HOH . O 5 HOH A 8 1308 48 HOH HOH . O 5 HOH A 9 1309 63 HOH HOH . O 5 HOH A 10 1310 57 HOH HOH . O 5 HOH A 11 1311 101 HOH HOH . O 5 HOH A 12 1312 9 HOH HOH . O 5 HOH A 13 1313 24 HOH HOH . O 5 HOH A 14 1314 44 HOH HOH . O 5 HOH A 15 1315 78 HOH HOH . O 5 HOH A 16 1316 49 HOH HOH . O 5 HOH A 17 1317 119 HOH HOH . O 5 HOH A 18 1318 21 HOH HOH . O 5 HOH A 19 1319 58 HOH HOH . O 5 HOH A 20 1320 87 HOH HOH . O 5 HOH A 21 1321 35 HOH HOH . O 5 HOH A 22 1322 45 HOH HOH . O 5 HOH A 23 1323 30 HOH HOH . O 5 HOH A 24 1324 5 HOH HOH . O 5 HOH A 25 1325 103 HOH HOH . O 5 HOH A 26 1326 38 HOH HOH . O 5 HOH A 27 1327 112 HOH HOH . O 5 HOH A 28 1328 22 HOH HOH . O 5 HOH A 29 1329 105 HOH HOH . O 5 HOH A 30 1330 121 HOH HOH . O 5 HOH A 31 1331 3 HOH HOH . O 5 HOH A 32 1332 99 HOH HOH . O 5 HOH A 33 1333 79 HOH HOH . O 5 HOH A 34 1334 106 HOH HOH . O 5 HOH A 35 1335 27 HOH HOH . O 5 HOH A 36 1336 85 HOH HOH . O 5 HOH A 37 1337 126 HOH HOH . O 5 HOH A 38 1338 31 HOH HOH . O 5 HOH A 39 1339 59 HOH HOH . O 5 HOH A 40 1340 2 HOH HOH . O 5 HOH A 41 1341 120 HOH HOH . O 5 HOH A 42 1342 122 HOH HOH . O 5 HOH A 43 1343 81 HOH HOH . O 5 HOH A 44 1344 97 HOH HOH . O 5 HOH A 45 1345 94 HOH HOH . O 5 HOH A 46 1346 123 HOH HOH . O 5 HOH A 47 1347 82 HOH HOH . O 5 HOH A 48 1348 42 HOH HOH . O 5 HOH A 49 1349 46 HOH HOH . O 5 HOH A 50 1350 124 HOH HOH . O 5 HOH A 51 1351 53 HOH HOH . O 5 HOH A 52 1352 110 HOH HOH . O 5 HOH A 53 1353 17 HOH HOH . O 5 HOH A 54 1354 37 HOH HOH . O 5 HOH A 55 1355 70 HOH HOH . O 5 HOH A 56 1356 75 HOH HOH . O 5 HOH A 57 1357 108 HOH HOH . O 5 HOH A 58 1358 72 HOH HOH . O 5 HOH A 59 1359 88 HOH HOH . O 5 HOH A 60 1360 125 HOH HOH . P 5 HOH B 1 1301 8 HOH HOH . P 5 HOH B 2 1302 1 HOH HOH . P 5 HOH B 3 1303 90 HOH HOH . P 5 HOH B 4 1304 23 HOH HOH . P 5 HOH B 5 1305 111 HOH HOH . P 5 HOH B 6 1306 68 HOH HOH . P 5 HOH B 7 1307 67 HOH HOH . P 5 HOH B 8 1308 4 HOH HOH . P 5 HOH B 9 1309 14 HOH HOH . P 5 HOH B 10 1310 40 HOH HOH . P 5 HOH B 11 1311 29 HOH HOH . P 5 HOH B 12 1312 25 HOH HOH . P 5 HOH B 13 1313 91 HOH HOH . P 5 HOH B 14 1314 51 HOH HOH . P 5 HOH B 15 1315 96 HOH HOH . P 5 HOH B 16 1316 18 HOH HOH . P 5 HOH B 17 1317 76 HOH HOH . P 5 HOH B 18 1318 84 HOH HOH . P 5 HOH B 19 1319 102 HOH HOH . P 5 HOH B 20 1320 36 HOH HOH . P 5 HOH B 21 1321 41 HOH HOH . P 5 HOH B 22 1322 6 HOH HOH . P 5 HOH B 23 1323 16 HOH HOH . P 5 HOH B 24 1324 118 HOH HOH . P 5 HOH B 25 1325 47 HOH HOH . P 5 HOH B 26 1326 33 HOH HOH . P 5 HOH B 27 1327 86 HOH HOH . P 5 HOH B 28 1328 19 HOH HOH . P 5 HOH B 29 1329 7 HOH HOH . P 5 HOH B 30 1330 34 HOH HOH . P 5 HOH B 31 1331 20 HOH HOH . P 5 HOH B 32 1332 60 HOH HOH . P 5 HOH B 33 1333 113 HOH HOH . P 5 HOH B 34 1334 98 HOH HOH . P 5 HOH B 35 1335 92 HOH HOH . P 5 HOH B 36 1336 26 HOH HOH . P 5 HOH B 37 1337 64 HOH HOH . P 5 HOH B 38 1338 89 HOH HOH . P 5 HOH B 39 1339 80 HOH HOH . P 5 HOH B 40 1340 55 HOH HOH . P 5 HOH B 41 1341 32 HOH HOH . P 5 HOH B 42 1342 28 HOH HOH . P 5 HOH B 43 1343 15 HOH HOH . P 5 HOH B 44 1344 50 HOH HOH . P 5 HOH B 45 1345 115 HOH HOH . P 5 HOH B 46 1346 117 HOH HOH . P 5 HOH B 47 1347 39 HOH HOH . P 5 HOH B 48 1348 77 HOH HOH . P 5 HOH B 49 1349 114 HOH HOH . P 5 HOH B 50 1350 107 HOH HOH . P 5 HOH B 51 1351 62 HOH HOH . P 5 HOH B 52 1352 93 HOH HOH . P 5 HOH B 53 1353 73 HOH HOH . P 5 HOH B 54 1354 61 HOH HOH . P 5 HOH B 55 1355 52 HOH HOH . P 5 HOH B 56 1356 109 HOH HOH . P 5 HOH B 57 1357 54 HOH HOH . P 5 HOH B 58 1358 74 HOH HOH . P 5 HOH B 59 1359 116 HOH HOH . P 5 HOH B 60 1360 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 N6I . . . C 2 -35.383 20.508 46.145 1 38.8 ? C11 N6I 1201 A 1 HETATM 2 C C12 N6I . . . C 2 -35.614 21.828 46.498 1 36.73 ? C12 N6I 1201 A 1 HETATM 3 C C13 N6I . . . C 2 -35.184 22.322 47.75 1 34.53 ? C13 N6I 1201 A 1 HETATM 4 C C14 N6I . . . C 2 -34.498 21.493 48.63 1 38.27 ? C14 N6I 1201 A 1 HETATM 5 C C15 N6I . . . C 2 -34.266 20.189 48.235 1 39.76 ? C15 N6I 1201 A 1 HETATM 6 C C17 N6I . . . C 2 -34.691 19.69 47.029 1 35.84 ? C17 N6I 1201 A 1 HETATM 7 C C18 N6I . . . C 2 -36.277 20.912 39.979 1 34.74 ? C18 N6I 1201 A 1 HETATM 8 C C19 N6I . . . C 2 -37.546 20.146 39.934 1 37.88 ? C19 N6I 1201 A 1 HETATM 9 C C21 N6I . . . C 2 -39.407 19.043 39.246 1 40.71 ? C21 N6I 1201 A 1 HETATM 10 C C22 N6I . . . C 2 -40.462 18.473 38.464 1 40.93 ? C22 N6I 1201 A 1 HETATM 11 C C23 N6I . . . C 2 -41.448 17.721 39.112 1 43.33 ? C23 N6I 1201 A 1 HETATM 12 C C25 N6I . . . C 2 -43.372 17.877 37.323 1 47.45 ? C25 N6I 1201 A 1 HETATM 13 C C26 N6I . . . C 2 -44.082 17.048 36.251 1 54.88 ? C26 N6I 1201 A 1 HETATM 14 C C28 N6I . . . C 2 -42.082 15.782 36.177 1 52.9 ? C28 N6I 1201 A 1 HETATM 15 C C29 N6I . . . C 2 -42.381 15.78 37.627 1 52.81 ? C29 N6I 1201 A 1 HETATM 16 C C02 N6I . . . C 2 -35.757 21.416 38.767 1 38.16 ? C02 N6I 1201 A 1 HETATM 17 C C04 N6I . . . C 2 -33.791 22.367 39.802 1 38.54 ? C04 N6I 1201 A 1 HETATM 18 C C05 N6I . . . C 2 -34.225 21.876 40.976 1 36.36 ? C05 N6I 1201 A 1 HETATM 19 C C06 N6I . . . C 2 -35.462 21.112 41.087 1 37.95 ? C06 N6I 1201 A 1 HETATM 20 C C08 N6I . . . C 2 -35.233 20.84 43.605 1 36.07 ? C08 N6I 1201 A 1 HETATM 21 C C09 N6I . . . C 2 -35.859 19.983 44.798 1 34.79 ? C09 N6I 1201 A 1 HETATM 22 C C30 N6I . . . C 2 -41.339 17.539 40.514 1 39.85 ? C30 N6I 1201 A 1 HETATM 23 C C31 N6I . . . C 2 -40.296 18.091 41.293 1 38.65 ? C31 N6I 1201 A 1 HETATM 24 C C32 N6I . . . C 2 -40.205 17.869 42.727 1 44.19 ? C32 N6I 1201 A 1 HETATM 25 C C33 N6I . . . C 2 -39.314 18.846 40.609 1 36.68 ? C33 N6I 1201 A 1 HETATM 26 N N03 N6I . . . C 2 -34.544 22.161 38.63 1 39.47 ? N03 N6I 1201 A 1 HETATM 27 N N07 N6I . . . C 2 -35.849 20.629 42.292 1 35.32 ? N07 N6I 1201 A 1 HETATM 28 N N20 N6I . . . C 2 -38.289 19.871 38.799 1 40.56 ? N20 N6I 1201 A 1 HETATM 29 N N24 N6I . . . C 2 -42.546 17.125 38.269 1 53.8 ? N24 N6I 1201 A 1 HETATM 30 N N34 N6I . . . C 2 -38.202 19.533 40.987 1 36.09 ? N34 N6I 1201 A 1 HETATM 31 O O01 N6I . . . C 2 -36.36 21.312 37.652 1 35.16 ? O01 N6I 1201 A 1 HETATM 32 O O10 N6I . . . C 2 -35.385 18.678 44.576 1 33.08 ? O10 N6I 1201 A 1 HETATM 33 O O27 N6I . . . C 2 -43.194 16.254 35.401 1 59.9 ? O27 N6I 1201 A 1 HETATM 34 CL CL16 N6I . . . C 2 -33.383 19.084 49.331 1 44.88 ? CL16 N6I 1201 A 1 HETATM 35 H H1 N6I . . . C 2 -36.051 22.43 45.939 1 44.03 ? H1 N6I 1201 A 1 HETATM 36 H H2 N6I . . . C 2 -35.354 23.203 47.997 1 41.38 ? H2 N6I 1201 A 1 HETATM 37 H H3 N6I . . . C 2 -34.208 21.81 49.455 1 45.88 ? H3 N6I 1201 A 1 HETATM 38 H H4 N6I . . . C 2 -34.504 18.802 46.828 1 42.96 ? H4 N6I 1201 A 1 HETATM 39 H H5 N6I . . . C 2 -40.496 18.597 37.543 1 49.06 ? H5 N6I 1201 A 1 HETATM 40 H H6 N6I . . . C 2 -44.047 18.405 37.778 1 56.89 ? H6 N6I 1201 A 1 HETATM 41 H H7 N6I . . . C 2 -42.86 18.565 36.869 1 56.89 ? H7 N6I 1201 A 1 HETATM 42 H H8 N6I . . . C 2 -44.724 16.46 36.679 1 65.81 ? H8 N6I 1201 A 1 HETATM 43 H H9 N6I . . . C 2 -44.612 17.639 35.694 1 65.81 ? H9 N6I 1201 A 1 HETATM 44 H H10 N6I . . . C 2 -41.301 16.331 36.005 1 63.43 ? H10 N6I 1201 A 1 HETATM 45 H H11 N6I . . . C 2 -41.834 14.889 35.893 1 63.43 ? H11 N6I 1201 A 1 HETATM 46 H H12 N6I . . . C 2 -41.692 15.25 38.058 1 63.32 ? H12 N6I 1201 A 1 HETATM 47 H H13 N6I . . . C 2 -43.16 15.216 37.755 1 63.32 ? H13 N6I 1201 A 1 HETATM 48 H H14 N6I . . . C 2 -33.007 22.852 39.677 1 46.2 ? H14 N6I 1201 A 1 HETATM 49 H H15 N6I . . . C 2 -33.707 22.038 41.731 1 43.59 ? H15 N6I 1201 A 1 HETATM 50 H H16 N6I . . . C 2 -35.282 21.764 43.896 1 43.24 ? H16 N6I 1201 A 1 HETATM 51 H H17 N6I . . . C 2 -34.284 20.636 43.608 1 43.24 ? H17 N6I 1201 A 1 HETATM 52 H H18 N6I . . . C 2 -36.827 19.977 44.748 1 41.7 ? H18 N6I 1201 A 1 HETATM 53 H H19 N6I . . . C 2 -41.993 17.028 40.933 1 47.78 ? H19 N6I 1201 A 1 HETATM 54 H H20 N6I . . . C 2 -40.627 18.554 43.269 1 52.98 ? H20 N6I 1201 A 1 HETATM 55 H H21 N6I . . . C 2 -39.3 17.824 43.073 1 52.98 ? H21 N6I 1201 A 1 HETATM 56 H H22 N6I . . . C 2 -40.613 17.045 43.035 1 52.98 ? H22 N6I 1201 A 1 HETATM 57 H H23 N6I . . . C 2 -34.26 22.481 37.885 1 47.31 ? H23 N6I 1201 A 1 HETATM 58 H H24 N6I . . . C 2 -36.544 20.125 42.348 1 42.33 ? H24 N6I 1201 A 1 HETATM 59 H H27 N6I . . . C 2 -36.035 18.168 44.377 1 39.64 ? H27 N6I 1201 A 1 HETATM 60 H H341 N6I . . . C 2 -37.926 19.589 41.8 1 43.26 ? H341 N6I 1201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 60 #