data_7UHO # _model_server_result.job_id 3EBv1b5jXXoxI3TVGv3Lxg _model_server_result.datetime_utc '2024-10-18 12:28:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uho # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7UHO # _exptl.entry_id 7UHO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 538.488 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UHO _cell.length_a 105.853 _cell.length_b 105.853 _cell.length_c 99.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UHO _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -105.853 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -105.853 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 90 A HIS 116 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A ND1 HIS 92 A HIS 118 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A OD2 ASP 94 A ASP 120 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc4 A NE2 HIS 95 A HIS 121 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 A NE2 HIS 166 A HIS 192 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc6 A NE2 HIS 231 A HIS 257 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc7 B ZN ZN . A ZN 401 1_555 D O10 XQP . A XQP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc8 C ZN ZN . A ZN 402 1_555 D N1 XQP . A XQP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc9 C ZN ZN . A ZN 402 1_555 D O8 XQP . A XQP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C20 H22 N6 O10 S' _chem_comp.formula_weight 538.488 _chem_comp.id XQP _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-[(R)-carboxy{[(2R)-2-carboxy-2-(4-hydroxyphenyl)acetyl]amino}methoxymethyl]-5-{[(1-methyl-1H-tetrazol-5-yl)sulfanyl]methyl}-3,6-dihydro-2H-1,3-oxazine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C13 XQP sing 376 n n C12 C13 XQP doub 377 n y C12 C11 XQP sing 378 n y C13 C14 XQP sing 379 n y C11 C10 XQP doub 380 n y C14 C15 XQP doub 381 n y C10 C15 XQP sing 382 n y C10 C9 XQP sing 383 n n C7 O3 XQP sing 384 n n O4 C8 XQP doub 385 n n O3 C6 XQP sing 386 n n C8 C9 XQP sing 387 n n C8 N2 XQP sing 388 n n C9 C16 XQP sing 389 n n N2 C6 XQP sing 390 n n C6 C5 XQP sing 391 n n C6 C1 XQP sing 392 n n C16 O7 XQP doub 393 n n C16 O6 XQP sing 394 n n C5 O2 XQP sing 395 n n C5 N1 XQP sing 396 n n O10 C1 XQP doub 397 n n C1 O1 XQP sing 398 n n O2 C4 XQP sing 399 n n N1 C2 XQP sing 400 n n C4 C3 XQP sing 401 n n C2 C3 XQP doub 402 n n C2 C20 XQP sing 403 n n O8 C20 XQP doub 404 n n C3 C17 XQP sing 405 n n C20 O9 XQP sing 406 n n N4 N3 XQP sing 407 n y N4 N5 XQP doub 408 n y N3 C18 XQP doub 409 n y N5 N6 XQP sing 410 n y C17 S1 XQP sing 411 n n C18 N6 XQP sing 412 n y C18 S1 XQP sing 413 n n N6 C19 XQP sing 414 n n O1 H1 XQP sing 415 n n N2 H2 XQP sing 416 n n C5 H4 XQP sing 417 n n C7 H5 XQP sing 418 n n C7 H6 XQP sing 419 n n C7 H7 XQP sing 420 n n C9 H8 XQP sing 421 n n C11 H9 XQP sing 422 n n C12 H10 XQP sing 423 n n C14 H11 XQP sing 424 n n C15 H12 XQP sing 425 n n C17 H13 XQP sing 426 n n C17 H14 XQP sing 427 n n C19 H15 XQP sing 428 n n C19 H16 XQP sing 429 n n C19 H17 XQP sing 430 n n C4 H18 XQP sing 431 n n C4 H19 XQP sing 432 n n O5 H20 XQP sing 433 n n O6 H21 XQP sing 434 n n O9 H22 XQP sing 435 n n N1 H3 XQP sing 436 n n # _atom_sites.entry_id 7UHO _atom_sites.fract_transf_matrix[1][1] 0.009447 _atom_sites.fract_transf_matrix[1][2] 0.005454 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010909 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010091 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 301 ZN ZN . C 2 ZN A 1 402 302 ZN ZN . D 3 XQP A 1 403 303 XQP MX2 . E 4 HOH A 1 501 425 HOH HOH . E 4 HOH A 2 502 440 HOH HOH . E 4 HOH A 3 503 429 HOH HOH . E 4 HOH A 4 504 468 HOH HOH . E 4 HOH A 5 505 482 HOH HOH . E 4 HOH A 6 506 461 HOH HOH . E 4 HOH A 7 507 458 HOH HOH . E 4 HOH A 8 508 486 HOH HOH . E 4 HOH A 9 509 418 HOH HOH . E 4 HOH A 10 510 423 HOH HOH . E 4 HOH A 11 511 427 HOH HOH . E 4 HOH A 12 512 403 HOH HOH . E 4 HOH A 13 513 483 HOH HOH . E 4 HOH A 14 514 415 HOH HOH . E 4 HOH A 15 515 419 HOH HOH . E 4 HOH A 16 516 459 HOH HOH . E 4 HOH A 17 517 455 HOH HOH . E 4 HOH A 18 518 436 HOH HOH . E 4 HOH A 19 519 479 HOH HOH . E 4 HOH A 20 520 484 HOH HOH . E 4 HOH A 21 521 407 HOH HOH . E 4 HOH A 22 522 463 HOH HOH . E 4 HOH A 23 523 448 HOH HOH . E 4 HOH A 24 524 434 HOH HOH . E 4 HOH A 25 525 421 HOH HOH . E 4 HOH A 26 526 466 HOH HOH . E 4 HOH A 27 527 412 HOH HOH . E 4 HOH A 28 528 442 HOH HOH . E 4 HOH A 29 529 409 HOH HOH . E 4 HOH A 30 530 443 HOH HOH . E 4 HOH A 31 531 414 HOH HOH . E 4 HOH A 32 532 426 HOH HOH . E 4 HOH A 33 533 401 HOH HOH . E 4 HOH A 34 534 441 HOH HOH . E 4 HOH A 35 535 451 HOH HOH . E 4 HOH A 36 536 406 HOH HOH . E 4 HOH A 37 537 452 HOH HOH . E 4 HOH A 38 538 431 HOH HOH . E 4 HOH A 39 539 428 HOH HOH . E 4 HOH A 40 540 410 HOH HOH . E 4 HOH A 41 541 437 HOH HOH . E 4 HOH A 42 542 405 HOH HOH . E 4 HOH A 43 543 456 HOH HOH . E 4 HOH A 44 544 454 HOH HOH . E 4 HOH A 45 545 416 HOH HOH . E 4 HOH A 46 546 467 HOH HOH . E 4 HOH A 47 547 432 HOH HOH . E 4 HOH A 48 548 476 HOH HOH . E 4 HOH A 49 549 465 HOH HOH . E 4 HOH A 50 550 420 HOH HOH . E 4 HOH A 51 551 439 HOH HOH . E 4 HOH A 52 552 413 HOH HOH . E 4 HOH A 53 553 469 HOH HOH . E 4 HOH A 54 554 470 HOH HOH . E 4 HOH A 55 555 480 HOH HOH . E 4 HOH A 56 556 475 HOH HOH . E 4 HOH A 57 557 478 HOH HOH . E 4 HOH A 58 558 408 HOH HOH . E 4 HOH A 59 559 404 HOH HOH . E 4 HOH A 60 560 433 HOH HOH . E 4 HOH A 61 561 472 HOH HOH . E 4 HOH A 62 562 435 HOH HOH . E 4 HOH A 63 563 464 HOH HOH . E 4 HOH A 64 564 430 HOH HOH . E 4 HOH A 65 565 449 HOH HOH . E 4 HOH A 66 566 462 HOH HOH . E 4 HOH A 67 567 411 HOH HOH . E 4 HOH A 68 568 422 HOH HOH . E 4 HOH A 69 569 471 HOH HOH . E 4 HOH A 70 570 446 HOH HOH . E 4 HOH A 71 571 445 HOH HOH . E 4 HOH A 72 572 447 HOH HOH . E 4 HOH A 73 573 474 HOH HOH . E 4 HOH A 74 574 477 HOH HOH . E 4 HOH A 75 575 417 HOH HOH . E 4 HOH A 76 576 444 HOH HOH . E 4 HOH A 77 577 485 HOH HOH . E 4 HOH A 78 578 438 HOH HOH . E 4 HOH A 79 579 402 HOH HOH . E 4 HOH A 80 580 424 HOH HOH . E 4 HOH A 81 581 450 HOH HOH . E 4 HOH A 82 582 473 HOH HOH . E 4 HOH A 83 583 460 HOH HOH . E 4 HOH A 84 584 481 HOH HOH . E 4 HOH A 85 585 457 HOH HOH . E 4 HOH A 86 586 453 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XQP . . . D 3 -33.27 -2.813 15.269 0.81 22.74 ? C1 XQP 403 A 1 HETATM 2 O O1 XQP . . . D 3 -32.953 -2.081 16.227 0.81 21.55 ? O1 XQP 403 A 1 HETATM 3 C C2 XQP . . . D 3 -32.392 -5.481 17.141 0.81 17.35 ? C2 XQP 403 A 1 HETATM 4 N N2 XQP . . . D 3 -31.137 -2.295 14.236 0.81 20.06 ? N2 XQP 403 A 1 HETATM 5 C C3 XQP . . . D 3 -31.18 -5.2 17.65 0.81 22.01 ? C3 XQP 403 A 1 HETATM 6 O O4 XQP . . . D 3 -29.867 -3.322 12.67 0.81 17.9 ? O4 XQP 403 A 1 HETATM 7 C C5 XQP . . . D 3 -31.589 -4.624 14.937 0.81 21.38 ? C5 XQP 403 A 1 HETATM 8 C C6 XQP . . . D 3 -32.156 -3.33 14.354 0.81 23.63 ? C6 XQP 403 A 1 HETATM 9 C C7 XQP . . . D 3 -33.242 -2.606 12.287 0.81 20.13 ? C7 XQP 403 A 1 HETATM 10 C C8 XQP . . . D 3 -30.102 -2.354 13.396 0.81 20.67 ? C8 XQP 403 A 1 HETATM 11 C C9 XQP . . . D 3 -29.227 -1.097 13.366 0.81 26.85 ? C9 XQP 403 A 1 HETATM 12 C C10 XQP . . . D 3 -30.033 0.107 12.906 0.81 21.2 ? C10 XQP 403 A 1 HETATM 13 C C16 XQP . . . D 3 -28.605 -0.793 14.74 0.81 26.33 ? C16 XQP 403 A 1 HETATM 14 C C17 XQP . . . D 3 -30.52 -5.899 18.808 0.81 20.31 ? C17 XQP 403 A 1 HETATM 15 C C20 XQP . . . D 3 -33.55 -6.073 17.938 0.81 20.78 ? C20 XQP 403 A 1 HETATM 16 C C4 XQP . . . D 3 -30.431 -4.098 16.971 0.81 20.05 ? C4 XQP 403 A 1 HETATM 17 N N1 XQP . . . D 3 -32.594 -5.243 15.807 0.81 17.79 ? N1 XQP 403 A 1 HETATM 18 O O10 XQP . . . D 3 -34.452 -3.149 15.049 0.81 21 ? O10 XQP 403 A 1 HETATM 19 O O2 XQP . . . D 3 -30.331 -4.377 15.577 0.81 21.47 ? O2 XQP 403 A 1 HETATM 20 O O3 XQP . . . D 3 -32.735 -3.675 13.077 0.81 19.65 ? O3 XQP 403 A 1 HETATM 21 O O6 XQP . . . D 3 -29.355 -0.629 15.674 0.81 22.09 ? O6 XQP 403 A 1 HETATM 22 O O7 XQP . . . D 3 -27.4 -0.73 14.813 0.81 29.53 ? O7 XQP 403 A 1 HETATM 23 O O8 XQP . . . D 3 -34.539 -6.371 17.295 0.81 22.47 ? O8 XQP 403 A 1 HETATM 24 O O9 XQP . . . D 3 -33.398 -6.174 19.142 0.81 15.61 ? O9 XQP 403 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #