data_7UJH # _model_server_result.job_id LDW6qrj94ksmMrQF6hNN0w _model_server_result.datetime_utc '2024-11-23 07:13:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ujh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 7UJH # _exptl.entry_id 7UJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UJH _cell.length_a 55.851 _cell.length_b 126.036 _cell.length_c 129.606 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1 A,B,C,D,E,F,G 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H15 N2 O7 P' _chem_comp.formula_weight 306.209 _chem_comp.id PLG _chem_comp.mon_nstd_flag . _chem_comp.name N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLG doub 269 n y N1 C6 PLG sing 270 n y C2 C2A PLG sing 271 n n C2 C3 PLG sing 272 n y C2A H2A1 PLG sing 273 n n C2A H2A2 PLG sing 274 n n C2A H2A3 PLG sing 275 n n C3 O3 PLG sing 276 n n C3 C4 PLG doub 277 n y O3 HO3 PLG sing 278 n n C4 C4A PLG sing 279 n n C4 C5 PLG sing 280 n y C4A N PLG sing 281 n n C4A H4A1 PLG sing 282 n n C4A H4A2 PLG sing 283 n n C5 C6 PLG doub 284 n y C5 C5A PLG sing 285 n n C6 H6 PLG sing 286 n n C5A OP4 PLG sing 287 n n C5A H5A1 PLG sing 288 n n C5A H5A2 PLG sing 289 n n OP4 P PLG sing 290 n n P OP1 PLG doub 291 n n P OP2 PLG sing 292 n n P OP3 PLG sing 293 n n OP2 HOP2 PLG sing 294 n n OP3 HOP3 PLG sing 295 n n C O PLG doub 296 n n C OXT PLG sing 297 n n C CA PLG sing 298 n n OXT HXT PLG sing 299 n n CA N PLG sing 300 n n CA HA2 PLG sing 301 n n CA HA1 PLG sing 302 n n N H PLG sing 303 n n # _atom_sites.entry_id 7UJH _atom_sites.fract_transf_matrix[1][1] 0.017905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007716 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 501 501 PLG PLG . D 2 PLG B 1 501 501 PLG PLG . E 3 EDO B 1 502 1 EDO EDO . F 4 HOH A 1 601 46 HOH HOH . F 4 HOH A 2 602 35 HOH HOH . F 4 HOH A 3 603 6 HOH HOH . F 4 HOH A 4 604 54 HOH HOH . F 4 HOH A 5 605 53 HOH HOH . F 4 HOH A 6 606 22 HOH HOH . F 4 HOH A 7 607 48 HOH HOH . F 4 HOH A 8 608 36 HOH HOH . F 4 HOH A 9 609 28 HOH HOH . F 4 HOH A 10 610 41 HOH HOH . F 4 HOH A 11 611 7 HOH HOH . F 4 HOH A 12 612 10 HOH HOH . F 4 HOH A 13 613 11 HOH HOH . F 4 HOH A 14 614 15 HOH HOH . F 4 HOH A 15 615 44 HOH HOH . F 4 HOH A 16 616 27 HOH HOH . F 4 HOH A 17 617 8 HOH HOH . F 4 HOH A 18 618 12 HOH HOH . F 4 HOH A 19 619 49 HOH HOH . F 4 HOH A 20 620 26 HOH HOH . G 4 HOH B 1 601 30 HOH HOH . G 4 HOH B 2 602 55 HOH HOH . G 4 HOH B 3 603 39 HOH HOH . G 4 HOH B 4 604 45 HOH HOH . G 4 HOH B 5 605 43 HOH HOH . G 4 HOH B 6 606 13 HOH HOH . G 4 HOH B 7 607 42 HOH HOH . G 4 HOH B 8 608 1 HOH HOH . G 4 HOH B 9 609 14 HOH HOH . G 4 HOH B 10 610 51 HOH HOH . G 4 HOH B 11 611 37 HOH HOH . G 4 HOH B 12 612 32 HOH HOH . G 4 HOH B 13 613 16 HOH HOH . G 4 HOH B 14 614 38 HOH HOH . G 4 HOH B 15 615 31 HOH HOH . G 4 HOH B 16 616 29 HOH HOH . G 4 HOH B 17 617 20 HOH HOH . G 4 HOH B 18 618 5 HOH HOH . G 4 HOH B 19 619 18 HOH HOH . G 4 HOH B 20 620 33 HOH HOH . G 4 HOH B 21 621 47 HOH HOH . G 4 HOH B 22 622 34 HOH HOH . G 4 HOH B 23 623 21 HOH HOH . G 4 HOH B 24 624 19 HOH HOH . G 4 HOH B 25 625 9 HOH HOH . G 4 HOH B 26 626 40 HOH HOH . G 4 HOH B 27 627 3 HOH HOH . G 4 HOH B 28 628 4 HOH HOH . G 4 HOH B 29 629 25 HOH HOH . G 4 HOH B 30 630 23 HOH HOH . G 4 HOH B 31 631 2 HOH HOH . G 4 HOH B 32 632 24 HOH HOH . G 4 HOH B 33 633 17 HOH HOH . G 4 HOH B 34 634 52 HOH HOH . G 4 HOH B 35 635 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLG . . . D 2 -12.467 -25.168 6.031 1 52.63 ? N1 PLG 501 B 1 HETATM 2 C C2 PLG . . . D 2 -13.177 -26.187 5.519 1 53.55 ? C2 PLG 501 B 1 HETATM 3 C C2A PLG . . . D 2 -12.69 -26.872 4.253 1 53.05 ? C2A PLG 501 B 1 HETATM 4 C C3 PLG . . . D 2 -14.344 -26.618 6.128 1 54.21 ? C3 PLG 501 B 1 HETATM 5 O O3 PLG . . . D 2 -15.016 -27.676 5.506 1 54.75 ? O3 PLG 501 B 1 HETATM 6 C C4 PLG . . . D 2 -14.798 -26.014 7.274 1 55.36 ? C4 PLG 501 B 1 HETATM 7 C C4A PLG . . . D 2 -16.09 -26.453 7.975 1 57.07 ? C4A PLG 501 B 1 HETATM 8 C C5 PLG . . . D 2 -14.072 -24.982 7.805 1 55.29 ? C5 PLG 501 B 1 HETATM 9 C C6 PLG . . . D 2 -12.909 -24.568 7.16 1 54 ? C6 PLG 501 B 1 HETATM 10 C C5A PLG . . . D 2 -14.479 -24.2 9.067 1 55.89 ? C5A PLG 501 B 1 HETATM 11 O OP4 PLG . . . D 2 -14.691 -24.936 10.233 1 54.31 ? OP4 PLG 501 B 1 HETATM 12 P P PLG . . . D 2 -15.328 -24.207 11.578 1 56 ? P PLG 501 B 1 HETATM 13 O OP1 PLG . . . D 2 -16.748 -24.665 11.823 1 57.12 ? OP1 PLG 501 B 1 HETATM 14 O OP2 PLG . . . D 2 -14.446 -24.605 12.729 1 54.69 ? OP2 PLG 501 B 1 HETATM 15 O OP3 PLG . . . D 2 -15.365 -22.694 11.475 1 53.63 ? OP3 PLG 501 B 1 HETATM 16 C C PLG . . . D 2 -18.473 -29.146 7.029 1 61.55 ? C PLG 501 B 1 HETATM 17 O O PLG . . . D 2 -17.879 -29.525 5.975 1 56.81 ? O PLG 501 B 1 HETATM 18 O OXT PLG . . . D 2 -19.51 -29.757 7.435 1 63.69 ? OXT PLG 501 B 1 HETATM 19 C CA PLG . . . D 2 -17.94 -27.945 7.824 1 58.51 ? CA PLG 501 B 1 HETATM 20 N N PLG . . . D 2 -16.524 -27.759 7.521 1 55.52 ? N PLG 501 B 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 111 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #