data_7UJN
#
_model_server_result.job_id            ZVO_9wjwiggmgfSJv3AHdQ 
_model_server_result.datetime_utc      '2025-04-03 21:35:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ujn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":703}' 
#
_entry.id    7UJN 
#
_exptl.entry_id    7UJN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UJN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UJN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                T8T 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 T8T doub 288 n n 
N1 C6 T8T sing 289 n n 
N2 C2 T8T sing 290 n n 
C2 N3 T8T sing 291 n n 
N2 HN2 T8T sing 292 n n 
N2 HN2A T8T sing 293 n n 
N3 C4 T8T sing 294 n n 
N3 HN3 T8T sing 295 n n 
C5 C4 T8T doub 296 n y 
C4 N9 T8T sing 297 n y 
C6 C5 T8T sing 298 n n 
C5 N7 T8T sing 299 n y 
O6 C6 T8T doub 300 n n 
N7 C8 T8T doub 301 n y 
N9 C8 T8T sing 302 n y 
C8 H8 T8T sing 303 n n 
N9 C1' T8T sing 304 n n 
S1A PA T8T sing 305 n n 
PA O5' T8T sing 306 n n 
PA O2A T8T doub 307 n n 
PA O3A T8T sing 308 n n 
O3B PB T8T sing 309 n n 
O3A PB T8T sing 310 n n 
PB O1B T8T doub 311 n n 
PB O2B T8T sing 312 n n 
O3G PG T8T doub 313 n n 
O3B PG T8T sing 314 n n 
PG O1G T8T sing 315 n n 
PG O2G T8T sing 316 n n 
O4' C1' T8T sing 317 n n 
C1' C2' T8T sing 318 n n 
C1' H1' T8T sing 319 n n 
S1A HS1A T8T sing 320 n n 
O1G HO1G T8T sing 321 n n 
C2' C3' T8T sing 322 n n 
C2' H2' T8T sing 323 n n 
C2' "H2'A" T8T sing 324 n n 
O2B HO2B T8T sing 325 n n 
O2G HO2G T8T sing 326 n n 
C4' C3' T8T sing 327 n n 
C3' O3' T8T sing 328 n n 
C3' H3' T8T sing 329 n n 
O3' HO3' T8T sing 330 n n 
O4' C4' T8T sing 331 n n 
C4' C5' T8T sing 332 n n 
C4' H4' T8T sing 333 n n 
C5' O5' T8T sing 334 n n 
C5' H5' T8T sing 335 n n 
C5' "H5'A" T8T sing 336 n n 
#
_atom_sites.entry_id                     7UJN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 T8T A 1 701 702 T8T T8T . 
F 2 T8T A 1 702 700 T8T T8T . 
G 2 T8T A 1 703 701 T8T T8T . 
H 2 T8T B 1 701 700 T8T T8T . 
I 2 T8T B 1 702 702 T8T T8T . 
J 2 T8T B 1 703 701 T8T T8T . 
K 2 T8T C 1 701 701 T8T T8T . 
L 2 T8T C 1 702 700 T8T T8T . 
M 2 T8T C 1 703 702 T8T T8T . 
N 2 T8T D 1 701 701 T8T T8T . 
O 2 T8T D 1 702 700 T8T T8T . 
P 2 T8T D 1 703 702 T8T T8T . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 T8T . . . M 2 144.89 124.597 144.453 1 57.7 ? N1 T8T 703 C 1 
HETATM 2 C C2 T8T . . . M 2 144.547 123.385 143.919 1 57.7 ? C2 T8T 703 C 1 
HETATM 3 N N2 T8T . . . M 2 145.547 122.562 143.596 1 57.7 ? N2 T8T 703 C 1 
HETATM 4 N N3 T8T . . . M 2 143.288 123.002 143.721 1 57.7 ? N3 T8T 703 C 1 
HETATM 5 C C4 T8T . . . M 2 142.399 123.934 144.105 1 57.7 ? C4 T8T 703 C 1 
HETATM 6 C C5 T8T . . . M 2 142.648 125.176 144.648 1 57.7 ? C5 T8T 703 C 1 
HETATM 7 C C6 T8T . . . M 2 143.998 125.571 144.853 1 57.7 ? C6 T8T 703 C 1 
HETATM 8 O O6 T8T . . . M 2 144.401 126.632 145.328 1 57.7 ? O6 T8T 703 C 1 
HETATM 9 N N7 T8T . . . M 2 141.46 125.837 144.909 1 57.7 ? N7 T8T 703 C 1 
HETATM 10 C C8 T8T . . . M 2 140.529 124.996 144.528 1 57.7 ? C8 T8T 703 C 1 
HETATM 11 N N9 T8T . . . M 2 141.031 123.82 144.034 1 57.7 ? N9 T8T 703 C 1 
HETATM 12 P PA T8T . . . M 2 141.615 117.637 143.757 1 57.7 ? PA T8T 703 C 1 
HETATM 13 P PB T8T . . . M 2 143.454 115.865 142.399 1 57.7 ? PB T8T 703 C 1 
HETATM 14 P PG T8T . . . M 2 144.998 116.904 140.164 1 57.7 ? PG T8T 703 C 1 
HETATM 15 C C1' T8T . . . M 2 140.269 122.653 143.554 1 57.7 ? C1' T8T 703 C 1 
HETATM 16 S S1A T8T . . . M 2 140.131 116.585 144.306 1 57.7 ? S1A T8T 703 C 1 
HETATM 17 O O1B T8T . . . M 2 142.369 115.507 141.464 1 57.7 ? O1B T8T 703 C 1 
HETATM 18 O O1G T8T . . . M 2 143.826 116.768 139.263 1 57.7 ? O1G T8T 703 C 1 
HETATM 19 C C2' T8T . . . M 2 139.829 122.749 142.106 1 57.7 ? C2' T8T 703 C 1 
HETATM 20 O O2A T8T . . . M 2 141.957 118.768 144.774 1 57.7 ? O2A T8T 703 C 1 
HETATM 21 O O2B T8T . . . M 2 144.189 114.694 143.051 1 57.7 ? O2B T8T 703 C 1 
HETATM 22 O O2G T8T . . . M 2 145.68 118.27 140.081 1 57.7 ? O2G T8T 703 C 1 
HETATM 23 C C3' T8T . . . M 2 139.757 121.291 141.658 1 57.7 ? C3' T8T 703 C 1 
HETATM 24 O O3' T8T . . . M 2 138.411 120.819 141.698 1 57.7 ? O3' T8T 703 C 1 
HETATM 25 O O3A T8T . . . M 2 142.944 116.815 143.568 1 57.7 ? O3A T8T 703 C 1 
HETATM 26 O O3B T8T . . . M 2 144.554 116.77 141.69 1 57.7 ? O3B T8T 703 C 1 
HETATM 27 O O3G T8T . . . M 2 146.05 115.81 139.972 1 57.7 ? O3G T8T 703 C 1 
HETATM 28 C C4' T8T . . . M 2 140.6 120.537 142.694 1 57.7 ? C4' T8T 703 C 1 
HETATM 29 O O4' T8T . . . M 2 141.11 121.527 143.61 1 57.7 ? O4' T8T 703 C 1 
HETATM 30 C C5' T8T . . . M 2 141.746 119.736 142.128 1 57.7 ? C5' T8T 703 C 1 
HETATM 31 O O5' T8T . . . M 2 141.478 118.335 142.347 1 57.7 ? O5' T8T 703 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#