data_7UJV
#
_model_server_result.job_id            YLqIZuRUkDeZLaJLmuRzQw 
_model_server_result.datetime_utc      '2024-11-17 04:32:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ujv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7UJV 
#
_exptl.entry_id    7UJV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UJV 
_cell.length_a            129.078 
_cell.length_b            37.597 
_cell.length_c            42.148 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LEU 20 A LEU 542 1_555 B N NH2 21 A NH2 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? 
metalc ? metalc1 A NE2 HIS 137 B HIS 313 1_555 E FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc2 A OD1 ASP 139 B ASP 315 1_555 E FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? 
metalc ? metalc3 A NE2 HIS 198 B HIS 374 1_555 E FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc4 C O2 OGA . B OGA 501 1_555 E FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc5 C O2' OGA . B OGA 501 1_555 E FE FE . B FE 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc6 E FE FE . B FE 503 1_555 F O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7UJV 
_atom_sites.fract_transf_matrix[1][1]    0.007747 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026598 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 OGA B 1 501 477 OGA OGA . 
D 4 GOL B 1 502 478 GOL GOL . 
E 5 FE B 1 503 1 FE FE . 
F 6 HOH B 1 601 4 HOH HOH . 
F 6 HOH B 2 602 40 HOH HOH . 
F 6 HOH B 3 603 92 HOH HOH . 
F 6 HOH B 4 604 36 HOH HOH . 
F 6 HOH B 5 605 79 HOH HOH . 
F 6 HOH B 6 606 101 HOH HOH . 
F 6 HOH B 7 607 8 HOH HOH . 
F 6 HOH B 8 608 1 HOH HOH . 
F 6 HOH B 9 609 95 HOH HOH . 
F 6 HOH B 10 610 114 HOH HOH . 
F 6 HOH B 11 611 29 HOH HOH . 
F 6 HOH B 12 612 57 HOH HOH . 
F 6 HOH B 13 613 71 HOH HOH . 
F 6 HOH B 14 614 26 HOH HOH . 
F 6 HOH B 15 615 10 HOH HOH . 
F 6 HOH B 16 616 33 HOH HOH . 
F 6 HOH B 17 617 13 HOH HOH . 
F 6 HOH B 18 618 108 HOH HOH . 
F 6 HOH B 19 619 78 HOH HOH . 
F 6 HOH B 20 620 32 HOH HOH . 
F 6 HOH B 21 621 44 HOH HOH . 
F 6 HOH B 22 622 99 HOH HOH . 
F 6 HOH B 23 623 12 HOH HOH . 
F 6 HOH B 24 624 17 HOH HOH . 
F 6 HOH B 25 625 38 HOH HOH . 
F 6 HOH B 26 626 39 HOH HOH . 
F 6 HOH B 27 627 80 HOH HOH . 
F 6 HOH B 28 628 6 HOH HOH . 
F 6 HOH B 29 629 25 HOH HOH . 
F 6 HOH B 30 630 62 HOH HOH . 
F 6 HOH B 31 631 5 HOH HOH . 
F 6 HOH B 32 632 19 HOH HOH . 
F 6 HOH B 33 633 2 HOH HOH . 
F 6 HOH B 34 634 41 HOH HOH . 
F 6 HOH B 35 635 24 HOH HOH . 
F 6 HOH B 36 636 43 HOH HOH . 
F 6 HOH B 37 637 22 HOH HOH . 
F 6 HOH B 38 638 15 HOH HOH . 
F 6 HOH B 39 639 64 HOH HOH . 
F 6 HOH B 40 640 51 HOH HOH . 
F 6 HOH B 41 641 49 HOH HOH . 
F 6 HOH B 42 642 86 HOH HOH . 
F 6 HOH B 43 643 34 HOH HOH . 
F 6 HOH B 44 644 69 HOH HOH . 
F 6 HOH B 45 645 46 HOH HOH . 
F 6 HOH B 46 646 52 HOH HOH . 
F 6 HOH B 47 647 87 HOH HOH . 
F 6 HOH B 48 648 47 HOH HOH . 
F 6 HOH B 49 649 31 HOH HOH . 
F 6 HOH B 50 650 98 HOH HOH . 
F 6 HOH B 51 651 9 HOH HOH . 
F 6 HOH B 52 652 35 HOH HOH . 
F 6 HOH B 53 653 72 HOH HOH . 
F 6 HOH B 54 654 28 HOH HOH . 
F 6 HOH B 55 655 45 HOH HOH . 
F 6 HOH B 56 656 76 HOH HOH . 
F 6 HOH B 57 657 53 HOH HOH . 
F 6 HOH B 58 658 23 HOH HOH . 
F 6 HOH B 59 659 77 HOH HOH . 
F 6 HOH B 60 660 21 HOH HOH . 
F 6 HOH B 61 661 37 HOH HOH . 
F 6 HOH B 62 662 85 HOH HOH . 
F 6 HOH B 63 663 106 HOH HOH . 
F 6 HOH B 64 664 16 HOH HOH . 
F 6 HOH B 65 665 110 HOH HOH . 
F 6 HOH B 66 666 50 HOH HOH . 
F 6 HOH B 67 667 75 HOH HOH . 
F 6 HOH B 68 668 88 HOH HOH . 
F 6 HOH B 69 669 90 HOH HOH . 
F 6 HOH B 70 670 81 HOH HOH . 
F 6 HOH B 71 671 91 HOH HOH . 
F 6 HOH B 72 672 14 HOH HOH . 
F 6 HOH B 73 673 3 HOH HOH . 
F 6 HOH B 74 674 63 HOH HOH . 
F 6 HOH B 75 675 82 HOH HOH . 
F 6 HOH B 76 676 89 HOH HOH . 
F 6 HOH B 77 677 20 HOH HOH . 
F 6 HOH B 78 678 27 HOH HOH . 
F 6 HOH B 79 679 65 HOH HOH . 
F 6 HOH B 80 680 67 HOH HOH . 
F 6 HOH B 81 681 84 HOH HOH . 
F 6 HOH B 82 682 111 HOH HOH . 
F 6 HOH B 83 683 112 HOH HOH . 
F 6 HOH B 84 684 113 HOH HOH . 
F 6 HOH B 85 685 11 HOH HOH . 
F 6 HOH B 86 686 107 HOH HOH . 
F 6 HOH B 87 687 58 HOH HOH . 
F 6 HOH B 88 688 66 HOH HOH . 
F 6 HOH B 89 689 100 HOH HOH . 
F 6 HOH B 90 690 103 HOH HOH . 
F 6 HOH B 91 691 74 HOH HOH . 
F 6 HOH B 92 692 105 HOH HOH . 
F 6 HOH B 93 693 97 HOH HOH . 
F 6 HOH B 94 694 116 HOH HOH . 
F 6 HOH B 95 695 48 HOH HOH . 
F 6 HOH B 96 696 117 HOH HOH . 
F 6 HOH B 97 697 68 HOH HOH . 
F 6 HOH B 98 698 102 HOH HOH . 
F 6 HOH B 99 699 104 HOH HOH . 
G 6 HOH A 1 601 18 HOH HOH . 
G 6 HOH A 2 602 96 HOH HOH . 
G 6 HOH A 3 603 7 HOH HOH . 
G 6 HOH A 4 604 93 HOH HOH . 
G 6 HOH A 5 605 56 HOH HOH . 
G 6 HOH A 6 606 59 HOH HOH . 
G 6 HOH A 7 607 94 HOH HOH . 
G 6 HOH A 8 608 42 HOH HOH . 
G 6 HOH A 9 609 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 26.436 22.367 24.1 1 44.91 0 C1 GOL 502 B 1 
HETATM 2 O O1 GOL . . . D 4 26.454 21.927 25.462 1 44.29 0 O1 GOL 502 B 1 
HETATM 3 C C2 GOL . . . D 4 25.66 23.653 23.925 1 42.76 0 C2 GOL 502 B 1 
HETATM 4 O O2 GOL . . . D 4 26.429 24.736 24.431 1 46.61 0 O2 GOL 502 B 1 
HETATM 5 C C3 GOL . . . D 4 25.264 23.945 22.495 1 44.71 0 C3 GOL 502 B 1 
HETATM 6 O O3 GOL . . . D 4 23.882 23.665 22.278 1 50.95 0 O3 GOL 502 B 1 
HETATM 7 H H11 GOL . . . D 4 26.026 21.665 23.539 1 44.24 0 H11 GOL 502 B 1 
HETATM 8 H H12 GOL . . . D 4 27.364 22.504 23.79 1 44.24 0 H12 GOL 502 B 1 
HETATM 9 H HO1 GOL . . . D 4 26.893 21.227 25.497 0 43.64 0 HO1 GOL 502 B 1 
HETATM 10 H H2 GOL . . . D 4 24.836 23.585 24.461 1 44.15 0 H2 GOL 502 B 1 
HETATM 11 H HO2 GOL . . . D 4 26.483 25.344 23.806 0 46.37 0 HO2 GOL 502 B 1 
HETATM 12 H H31 GOL . . . D 4 25.81 23.393 21.884 1 45.61 0 H31 GOL 502 B 1 
HETATM 13 H H32 GOL . . . D 4 25.439 24.895 22.295 1 45.58 0 H32 GOL 502 B 1 
HETATM 14 H HO3 GOL . . . D 4 23.723 22.875 22.536 1 48.77 0 HO3 GOL 502 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           118 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           455 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           14 
#