data_7UL0 # _model_server_result.job_id Qqo92cVhTrvIjXRnWunu2w _model_server_result.datetime_utc '2024-11-21 09:05:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ul0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7UL0 # _exptl.entry_id 7UL0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UL0 _cell.length_a 81.771 _cell.length_b 100.709 _cell.length_c 106.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UL0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 B 1 NAG A 1000 NAG 4 n D NAG 2 B 2 NAG A 1001 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 B SG CYS 146 H CYS 140 1_555 B SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 C SG CYS 22 L CYS 23 1_555 C SG CYS 90 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 C SG CYS 137 L CYS 133 1_555 C SG CYS 197 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 C ND2 ASN 96 L ASN 94 1_555 E C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale3 D O4 NAG . B NAG 1 1_555 D C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7UL0 _atom_sites.fract_transf_matrix[1][1] 0.012229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00993 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009432 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG L 1 301 1000 NAG NAG . F 6 NA L 1 302 1 NA NA . G 7 HOH A 1 601 124 HOH HOH . G 7 HOH A 2 602 126 HOH HOH . G 7 HOH A 3 603 21 HOH HOH . G 7 HOH A 4 604 120 HOH HOH . G 7 HOH A 5 605 100 HOH HOH . G 7 HOH A 6 606 123 HOH HOH . G 7 HOH A 7 607 41 HOH HOH . G 7 HOH A 8 608 9 HOH HOH . G 7 HOH A 9 609 61 HOH HOH . G 7 HOH A 10 610 34 HOH HOH . G 7 HOH A 11 611 81 HOH HOH . G 7 HOH A 12 612 2 HOH HOH . G 7 HOH A 13 613 115 HOH HOH . G 7 HOH A 14 614 8 HOH HOH . G 7 HOH A 15 615 31 HOH HOH . G 7 HOH A 16 616 99 HOH HOH . G 7 HOH A 17 617 54 HOH HOH . G 7 HOH A 18 618 58 HOH HOH . G 7 HOH A 19 619 40 HOH HOH . G 7 HOH A 20 620 47 HOH HOH . G 7 HOH A 21 621 71 HOH HOH . G 7 HOH A 22 622 27 HOH HOH . G 7 HOH A 23 623 60 HOH HOH . G 7 HOH A 24 624 6 HOH HOH . G 7 HOH A 25 625 73 HOH HOH . G 7 HOH A 26 626 28 HOH HOH . G 7 HOH A 27 627 56 HOH HOH . G 7 HOH A 28 628 77 HOH HOH . G 7 HOH A 29 629 122 HOH HOH . G 7 HOH A 30 630 91 HOH HOH . G 7 HOH A 31 631 48 HOH HOH . G 7 HOH A 32 632 24 HOH HOH . G 7 HOH A 33 633 74 HOH HOH . G 7 HOH A 34 634 70 HOH HOH . G 7 HOH A 35 635 33 HOH HOH . G 7 HOH A 36 636 98 HOH HOH . G 7 HOH A 37 637 102 HOH HOH . G 7 HOH A 38 638 108 HOH HOH . G 7 HOH A 39 639 104 HOH HOH . G 7 HOH A 40 640 119 HOH HOH . G 7 HOH A 41 641 38 HOH HOH . G 7 HOH A 42 642 92 HOH HOH . H 7 HOH H 1 301 11 HOH HOH . H 7 HOH H 2 302 16 HOH HOH . H 7 HOH H 3 303 97 HOH HOH . H 7 HOH H 4 304 32 HOH HOH . H 7 HOH H 5 305 112 HOH HOH . H 7 HOH H 6 306 26 HOH HOH . H 7 HOH H 7 307 57 HOH HOH . H 7 HOH H 8 308 12 HOH HOH . H 7 HOH H 9 309 52 HOH HOH . H 7 HOH H 10 310 111 HOH HOH . H 7 HOH H 11 311 75 HOH HOH . H 7 HOH H 12 312 113 HOH HOH . H 7 HOH H 13 313 82 HOH HOH . H 7 HOH H 14 314 80 HOH HOH . H 7 HOH H 15 315 43 HOH HOH . H 7 HOH H 16 316 76 HOH HOH . H 7 HOH H 17 317 49 HOH HOH . H 7 HOH H 18 318 89 HOH HOH . H 7 HOH H 19 319 117 HOH HOH . I 7 HOH L 1 401 1 HOH HOH . I 7 HOH L 2 402 14 HOH HOH . I 7 HOH L 3 403 42 HOH HOH . I 7 HOH L 4 404 118 HOH HOH . I 7 HOH L 5 405 64 HOH HOH . I 7 HOH L 6 406 125 HOH HOH . I 7 HOH L 7 407 19 HOH HOH . I 7 HOH L 8 408 45 HOH HOH . I 7 HOH L 9 409 55 HOH HOH . I 7 HOH L 10 410 36 HOH HOH . I 7 HOH L 11 411 35 HOH HOH . I 7 HOH L 12 412 128 HOH HOH . I 7 HOH L 13 413 103 HOH HOH . I 7 HOH L 14 414 44 HOH HOH . I 7 HOH L 15 415 46 HOH HOH . I 7 HOH L 16 416 17 HOH HOH . I 7 HOH L 17 417 18 HOH HOH . I 7 HOH L 18 418 59 HOH HOH . I 7 HOH L 19 419 93 HOH HOH . I 7 HOH L 20 420 101 HOH HOH . I 7 HOH L 21 421 29 HOH HOH . I 7 HOH L 22 422 85 HOH HOH . I 7 HOH L 23 423 10 HOH HOH . I 7 HOH L 24 424 37 HOH HOH . I 7 HOH L 25 425 15 HOH HOH . I 7 HOH L 26 426 22 HOH HOH . I 7 HOH L 27 427 94 HOH HOH . I 7 HOH L 28 428 65 HOH HOH . I 7 HOH L 29 429 72 HOH HOH . I 7 HOH L 30 430 23 HOH HOH . I 7 HOH L 31 431 30 HOH HOH . I 7 HOH L 32 432 87 HOH HOH . I 7 HOH L 33 433 129 HOH HOH . I 7 HOH L 34 434 127 HOH HOH . I 7 HOH L 35 435 105 HOH HOH . I 7 HOH L 36 436 79 HOH HOH . I 7 HOH L 37 437 107 HOH HOH . I 7 HOH L 38 438 116 HOH HOH . I 7 HOH L 39 439 51 HOH HOH . I 7 HOH L 40 440 83 HOH HOH . I 7 HOH L 41 441 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 36.073 -17.359 -22.743 1 88.85 ? C1 NAG 301 L 1 HETATM 2 C C2 NAG . . . E 5 35.548 -17.995 -24.045 1 86.94 ? C2 NAG 301 L 1 HETATM 3 C C3 NAG . . . E 5 36.224 -19.351 -24.301 1 94.71 ? C3 NAG 301 L 1 HETATM 4 C C4 NAG . . . E 5 37.735 -19.279 -24.115 1 96.8 ? C4 NAG 301 L 1 HETATM 5 C C5 NAG . . . E 5 38.074 -18.599 -22.791 1 103.37 ? C5 NAG 301 L 1 HETATM 6 C C6 NAG . . . E 5 39.561 -18.444 -22.543 1 98.94 ? C6 NAG 301 L 1 HETATM 7 C C7 NAG . . . E 5 33.236 -17.444 -24.724 1 84.7 ? C7 NAG 301 L 1 HETATM 8 C C8 NAG . . . E 5 31.783 -17.763 -24.524 1 70.31 ? C8 NAG 301 L 1 HETATM 9 N N2 NAG . . . E 5 34.1 -18.154 -23.986 1 85.9 ? N2 NAG 301 L 1 HETATM 10 O O3 NAG . . . E 5 35.937 -19.767 -25.631 1 90.07 ? O3 NAG 301 L 1 HETATM 11 O O4 NAG . . . E 5 38.278 -20.596 -24.133 1 96.61 ? O4 NAG 301 L 1 HETATM 12 O O5 NAG . . . E 5 37.494 -17.287 -22.778 1 95.37 ? O5 NAG 301 L 1 HETATM 13 O O6 NAG . . . E 5 40.287 -18.161 -23.733 1 98.29 ? O6 NAG 301 L 1 HETATM 14 O O7 NAG . . . E 5 33.607 -16.585 -25.514 1 86.37 ? O7 NAG 301 L 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #