data_7ULF # _model_server_result.job_id vIYsIicULi3gJ53EnN2cLw _model_server_result.datetime_utc '2025-03-21 01:29:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ulf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ULF # _exptl.entry_id 7ULF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ULF _cell.length_a 68.71 _cell.length_b 68.71 _cell.length_c 92.45 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ULF _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 0 0 184.9 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 246 A CYS 244 1_555 A SG CYS 246 A CYS 244 5_557 ? A ? ? A ? ? ? ? ? ? ? 2.978 ? disulf ? disulf2 A SG CYS 246 A CYS 244 1_555 A SG CYS 250 A CYS 248 5_557 ? A ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc1 A OD2 ASP 111 A ASP 109 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A OD1 ASP 152 A ASP 150 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A OG1 THR 153 A THR 151 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc4 A OE1 GLU 210 A GLU 208 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc5 C O3G GTP . A GTP 302 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc6 C O2B GTP . A GTP 302 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 C O2A GTP . A GTP 302 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc8 C O2G GTP . A GTP 302 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc9 D MN MN . A MN 303 1_555 F O HOH . A HOH 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc10 E MN MN . A MN 304 1_555 F O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc11 E MN MN . A MN 304 1_555 F O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc12 E MN MN . A MN 304 1_555 F O HOH . A HOH 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 147 n n PG O2G GTP sing 148 n n PG O3G GTP sing 149 n n PG O3B GTP sing 150 n n O2G HOG2 GTP sing 151 n n O3G HOG3 GTP sing 152 n n O3B PB GTP sing 153 n n PB O1B GTP doub 154 n n PB O2B GTP sing 155 n n PB O3A GTP sing 156 n n O2B HOB2 GTP sing 157 n n O3A PA GTP sing 158 n n PA O1A GTP doub 159 n n PA O2A GTP sing 160 n n PA O5' GTP sing 161 n n O2A HOA2 GTP sing 162 n n O5' C5' GTP sing 163 n n C5' C4' GTP sing 164 n n C5' H5' GTP sing 165 n n C5' "H5''" GTP sing 166 n n C4' O4' GTP sing 167 n n C4' C3' GTP sing 168 n n C4' H4' GTP sing 169 n n O4' C1' GTP sing 170 n n C3' O3' GTP sing 171 n n C3' C2' GTP sing 172 n n C3' H3' GTP sing 173 n n O3' HO3' GTP sing 174 n n C2' O2' GTP sing 175 n n C2' C1' GTP sing 176 n n C2' H2' GTP sing 177 n n O2' HO2' GTP sing 178 n n C1' N9 GTP sing 179 n n C1' H1' GTP sing 180 n n N9 C8 GTP sing 181 n y N9 C4 GTP sing 182 n y C8 N7 GTP doub 183 n y C8 H8 GTP sing 184 n n N7 C5 GTP sing 185 n y C5 C6 GTP sing 186 n n C5 C4 GTP doub 187 n y C6 O6 GTP doub 188 n n C6 N1 GTP sing 189 n n N1 C2 GTP sing 190 n n N1 HN1 GTP sing 191 n n C2 N2 GTP sing 192 n n C2 N3 GTP doub 193 n n N2 HN21 GTP sing 194 n n N2 HN22 GTP sing 195 n n N3 C4 GTP sing 196 n n # _atom_sites.entry_id 7ULF _atom_sites.fract_transf_matrix[1][1] 0.014554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GGL A 1 301 301 GGL GGL . C 3 GTP A 1 302 302 GTP GTP . D 4 MN A 1 303 303 MN MN . E 4 MN A 1 304 304 MN MN . F 5 HOH A 1 401 401 HOH HOH . F 5 HOH A 2 402 402 HOH HOH . F 5 HOH A 3 403 403 HOH HOH . F 5 HOH A 4 404 404 HOH HOH . F 5 HOH A 5 405 405 HOH HOH . F 5 HOH A 6 406 406 HOH HOH . F 5 HOH A 7 407 407 HOH HOH . F 5 HOH A 8 408 408 HOH HOH . F 5 HOH A 9 409 409 HOH HOH . F 5 HOH A 10 410 410 HOH HOH . F 5 HOH A 11 411 411 HOH HOH . F 5 HOH A 12 412 412 HOH HOH . F 5 HOH A 13 413 413 HOH HOH . F 5 HOH A 14 414 414 HOH HOH . F 5 HOH A 15 415 415 HOH HOH . F 5 HOH A 16 416 416 HOH HOH . F 5 HOH A 17 417 417 HOH HOH . F 5 HOH A 18 418 418 HOH HOH . F 5 HOH A 19 419 419 HOH HOH . F 5 HOH A 20 420 420 HOH HOH . F 5 HOH A 21 421 421 HOH HOH . F 5 HOH A 22 422 422 HOH HOH . F 5 HOH A 23 423 423 HOH HOH . F 5 HOH A 24 424 424 HOH HOH . F 5 HOH A 25 425 425 HOH HOH . F 5 HOH A 26 426 426 HOH HOH . F 5 HOH A 27 427 427 HOH HOH . F 5 HOH A 28 428 428 HOH HOH . F 5 HOH A 29 429 429 HOH HOH . F 5 HOH A 30 430 430 HOH HOH . F 5 HOH A 31 431 431 HOH HOH . F 5 HOH A 32 432 432 HOH HOH . F 5 HOH A 33 433 433 HOH HOH . F 5 HOH A 34 434 434 HOH HOH . F 5 HOH A 35 435 435 HOH HOH . F 5 HOH A 36 436 436 HOH HOH . F 5 HOH A 37 437 437 HOH HOH . F 5 HOH A 38 438 438 HOH HOH . F 5 HOH A 39 439 439 HOH HOH . F 5 HOH A 40 440 440 HOH HOH . F 5 HOH A 41 441 441 HOH HOH . F 5 HOH A 42 442 442 HOH HOH . F 5 HOH A 43 443 443 HOH HOH . F 5 HOH A 44 444 444 HOH HOH . F 5 HOH A 45 445 445 HOH HOH . F 5 HOH A 46 446 446 HOH HOH . F 5 HOH A 47 447 447 HOH HOH . F 5 HOH A 48 448 448 HOH HOH . F 5 HOH A 49 449 449 HOH HOH . F 5 HOH A 50 450 450 HOH HOH . F 5 HOH A 51 451 451 HOH HOH . F 5 HOH A 52 452 452 HOH HOH . F 5 HOH A 53 453 453 HOH HOH . F 5 HOH A 54 454 454 HOH HOH . F 5 HOH A 55 455 455 HOH HOH . F 5 HOH A 56 456 456 HOH HOH . F 5 HOH A 57 457 457 HOH HOH . F 5 HOH A 58 458 458 HOH HOH . F 5 HOH A 59 459 459 HOH HOH . F 5 HOH A 60 460 460 HOH HOH . F 5 HOH A 61 461 461 HOH HOH . F 5 HOH A 62 462 462 HOH HOH . F 5 HOH A 63 463 463 HOH HOH . F 5 HOH A 64 464 464 HOH HOH . F 5 HOH A 65 465 465 HOH HOH . F 5 HOH A 66 466 466 HOH HOH . F 5 HOH A 67 467 467 HOH HOH . F 5 HOH A 68 468 468 HOH HOH . F 5 HOH A 69 469 469 HOH HOH . F 5 HOH A 70 470 470 HOH HOH . F 5 HOH A 71 471 471 HOH HOH . F 5 HOH A 72 472 472 HOH HOH . F 5 HOH A 73 473 473 HOH HOH . F 5 HOH A 74 474 474 HOH HOH . F 5 HOH A 75 475 475 HOH HOH . F 5 HOH A 76 476 476 HOH HOH . F 5 HOH A 77 477 477 HOH HOH . F 5 HOH A 78 478 478 HOH HOH . F 5 HOH A 79 479 479 HOH HOH . F 5 HOH A 80 480 480 HOH HOH . F 5 HOH A 81 481 481 HOH HOH . F 5 HOH A 82 482 482 HOH HOH . F 5 HOH A 83 483 483 HOH HOH . F 5 HOH A 84 484 484 HOH HOH . F 5 HOH A 85 485 485 HOH HOH . F 5 HOH A 86 486 486 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 15.198 27.58 92.269 1 20 ? PG GTP 302 A 1 HETATM 2 O O1G GTP . . . C 3 16.458 26.959 91.747 1 21.14 ? O1G GTP 302 A 1 HETATM 3 O O2G GTP . . . C 3 14.414 26.692 93.139 1 19.33 ? O2G GTP 302 A 1 HETATM 4 O O3G GTP . . . C 3 14.379 28.218 91.194 1 17.72 ? O3G GTP 302 A 1 HETATM 5 O O3B GTP . . . C 3 15.695 28.765 93.259 1 17.54 ? O3B GTP 302 A 1 HETATM 6 P PB GTP . . . C 3 14.929 30.042 93.88 1 17.81 ? PB GTP 302 A 1 HETATM 7 O O1B GTP . . . C 3 15.067 29.989 95.353 1 17.53 ? O1B GTP 302 A 1 HETATM 8 O O2B GTP . . . C 3 13.553 30.143 93.272 1 18.49 ? O2B GTP 302 A 1 HETATM 9 O O3A GTP . . . C 3 15.823 31.231 93.281 1 17.06 ? O3A GTP 302 A 1 HETATM 10 P PA GTP . . . C 3 16.274 31.493 91.78 1 19.29 ? PA GTP 302 A 1 HETATM 11 O O1A GTP . . . C 3 17.637 30.887 91.558 1 19.16 ? O1A GTP 302 A 1 HETATM 12 O O2A GTP . . . C 3 15.167 31.074 90.857 1 17.17 ? O2A GTP 302 A 1 HETATM 13 O O5' GTP . . . C 3 16.453 33.072 91.718 1 19.72 ? O5' GTP 302 A 1 HETATM 14 C C5' GTP . . . C 3 15.298 33.939 91.889 1 18.44 ? C5' GTP 302 A 1 HETATM 15 C C4' GTP . . . C 3 15.725 35.357 91.63 1 18.02 ? C4' GTP 302 A 1 HETATM 16 O O4' GTP . . . C 3 16.697 35.739 92.634 1 19.58 ? O4' GTP 302 A 1 HETATM 17 C C3' GTP . . . C 3 16.41 35.623 90.285 1 19.2 ? C3' GTP 302 A 1 HETATM 18 O O3' GTP . . . C 3 16.119 36.934 89.812 1 19 ? O3' GTP 302 A 1 HETATM 19 C C2' GTP . . . C 3 17.898 35.496 90.634 1 18.12 ? C2' GTP 302 A 1 HETATM 20 O O2' GTP . . . C 3 18.694 36.172 89.692 1 18.57 ? O2' GTP 302 A 1 HETATM 21 C C1' GTP . . . C 3 17.892 36.146 92.007 1 18.34 ? C1' GTP 302 A 1 HETATM 22 N N9 GTP . . . C 3 19.01 35.79 92.861 1 18.35 ? N9 GTP 302 A 1 HETATM 23 C C8 GTP . . . C 3 19.472 34.565 93.256 1 19.02 ? C8 GTP 302 A 1 HETATM 24 N N7 GTP . . . C 3 20.507 34.634 94.066 1 20.88 ? N7 GTP 302 A 1 HETATM 25 C C5 GTP . . . C 3 20.749 35.995 94.192 1 19.04 ? C5 GTP 302 A 1 HETATM 26 C C6 GTP . . . C 3 21.747 36.693 94.925 1 19.83 ? C6 GTP 302 A 1 HETATM 27 O O6 GTP . . . C 3 22.622 36.233 95.671 1 21.58 ? O6 GTP 302 A 1 HETATM 28 N N1 GTP . . . C 3 21.605 38.066 94.776 1 18.69 ? N1 GTP 302 A 1 HETATM 29 C C2 GTP . . . C 3 20.666 38.705 94.01 1 19.41 ? C2 GTP 302 A 1 HETATM 30 N N2 GTP . . . C 3 20.713 40.042 93.984 1 19.77 ? N2 GTP 302 A 1 HETATM 31 N N3 GTP . . . C 3 19.726 38.061 93.32 1 19.64 ? N3 GTP 302 A 1 HETATM 32 C C4 GTP . . . C 3 19.832 36.716 93.46 1 19.72 ? C4 GTP 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #