data_7UMB # _model_server_result.job_id XH0F2wuSANYbkZ0DQFH4-g _model_server_result.datetime_utc '2024-11-26 10:24:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7umb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 7UMB # _exptl.entry_id 7UMB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7UMB _cell.length_a 139.5 _cell.length_b 139.5 _cell.length_c 220 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UMB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7UMB _atom_sites.fract_transf_matrix[1][1] 0.007168 _atom_sites.fract_transf_matrix[1][2] 0.004139 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004545 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1001 1001 ANP ANP . D 3 ANP C 1 401 401 ANP ANP . E 4 U9F C 1 402 601 U9F MTB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -60.455 58.93 -4.007 1 89.79 ? PG ANP 1001 B 1 HETATM 2 O O1G ANP . . . C 3 -60.926 60.201 -4.592 1 87.87 ? O1G ANP 1001 B 1 HETATM 3 O O2G ANP . . . C 3 -60.017 58.023 -5.233 1 95.17 ? O2G ANP 1001 B 1 HETATM 4 O O3G ANP . . . C 3 -59.244 59.176 -3.007 1 101.8 ? O3G ANP 1001 B 1 HETATM 5 P PB ANP . . . C 3 -62.707 57.183 -3.759 1 88.04 ? PB ANP 1001 B 1 HETATM 6 O O1B ANP . . . C 3 -63.542 56.538 -2.668 1 83.32 ? O1B ANP 1001 B 1 HETATM 7 O O2B ANP . . . C 3 -61.948 56.077 -4.664 1 92.06 ? O2B ANP 1001 B 1 HETATM 8 N N3B ANP . . . C 3 -61.702 58.324 -3.046 1 76.82 ? N3B ANP 1001 B 1 HETATM 9 P PA ANP . . . C 3 -63.98 57.365 -6.173 1 97.63 ? PA ANP 1001 B 1 HETATM 10 O O1A ANP . . . C 3 -63.815 58.526 -7.101 1 83.53 ? O1A ANP 1001 B 1 HETATM 11 O O2A ANP . . . C 3 -63.119 56.062 -6.283 1 91.85 ? O2A ANP 1001 B 1 HETATM 12 O O3A ANP . . . C 3 -63.721 57.914 -4.705 1 93.42 ? O3A ANP 1001 B 1 HETATM 13 O O5' ANP . . . C 3 -65.516 57.127 -6.043 1 82.49 ? O5' ANP 1001 B 1 HETATM 14 C C5' ANP . . . C 3 -66.387 58.226 -5.785 1 81.06 ? C5' ANP 1001 B 1 HETATM 15 C C4' ANP . . . C 3 -67.565 57.776 -4.947 1 85.94 ? C4' ANP 1001 B 1 HETATM 16 O O4' ANP . . . C 3 -68.326 56.767 -5.651 1 90 ? O4' ANP 1001 B 1 HETATM 17 C C3' ANP . . . C 3 -67.233 57.167 -3.591 1 88.48 ? C3' ANP 1001 B 1 HETATM 18 O O3' ANP . . . C 3 -68.264 57.504 -2.677 1 96.41 ? O3' ANP 1001 B 1 HETATM 19 C C2' ANP . . . C 3 -67.226 55.671 -3.888 1 88.41 ? C2' ANP 1001 B 1 HETATM 20 O O2' ANP . . . C 3 -67.495 54.899 -2.725 1 86.62 ? O2' ANP 1001 B 1 HETATM 21 C C1' ANP . . . C 3 -68.357 55.566 -4.912 1 87 ? C1' ANP 1001 B 1 HETATM 22 N N9 ANP . . . C 3 -68.225 54.439 -5.843 1 85.62 ? N9 ANP 1001 B 1 HETATM 23 C C8 ANP . . . C 3 -67.207 54.204 -6.728 1 91.08 ? C8 ANP 1001 B 1 HETATM 24 N N7 ANP . . . C 3 -67.351 53.099 -7.426 1 96.37 ? N7 ANP 1001 B 1 HETATM 25 C C5 ANP . . . C 3 -68.547 52.574 -6.959 1 94.5 ? C5 ANP 1001 B 1 HETATM 26 C C6 ANP . . . C 3 -69.268 51.391 -7.283 1 93.55 ? C6 ANP 1001 B 1 HETATM 27 N N6 ANP . . . C 3 -68.873 50.489 -8.194 1 88.69 ? N6 ANP 1001 B 1 HETATM 28 N N1 ANP . . . C 3 -70.422 51.161 -6.62 1 87.46 ? N1 ANP 1001 B 1 HETATM 29 C C2 ANP . . . C 3 -70.819 52.04 -5.697 1 89.2 ? C2 ANP 1001 B 1 HETATM 30 N N3 ANP . . . C 3 -70.223 53.168 -5.299 1 93.35 ? N3 ANP 1001 B 1 HETATM 31 C C4 ANP . . . C 3 -69.096 53.381 -5.973 1 85.66 ? C4 ANP 1001 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #