data_7UMB
#
_model_server_result.job_id            28DQ3QX2CEFH_j9rXpFiFA 
_model_server_result.datetime_utc      '2024-11-29 21:13:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7umb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    7UMB 
#
_exptl.entry_id    7UMB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1043.635 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "{3-[(1M,2M)-2-{[(1S,2P)-1H,1'H-[2,2'-bipyrrol]-5-yl-kappaN~1~]methylidene}-2H-pyrrol-5-yl-kappaN]-N-(2-{2-[3-({(3M)-3-[(4aM)-3-cyclopropyl-5-(2-fluoro-4-iodoanilino)-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl]phenyl}amino)-3-oxopropoxy]ethoxy}ethyl)propanamidato}(difluorido)boron" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7UMB 
_cell.length_a            139.5 
_cell.length_b            139.5 
_cell.length_c            220 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UMB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C47 H46 B F3 I N9 O7' 
_chem_comp.formula_weight    1043.635 
_chem_comp.id                U9F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "{3-[(1M,2M)-2-{[(1S,2P)-1H,1'H-[2,2'-bipyrrol]-5-yl-kappaN~1~]methylidene}-2H-pyrrol-5-yl-kappaN]-N-(2-{2-[3-({(3M)-3-[(4aM)-3-cyclopropyl-5-(2-fluoro-4-iodoanilino)-6,8-dimethyl-2,4,7-trioxo-3,4,6,7-tetrahydropyrido[4,3-d]pyrimidin-1(2H)-yl]phenyl}amino)-3-oxopropoxy]ethoxy}ethyl)propanamidato}(difluorido)boron" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C22 U9F sing 406 n n 
C23 C21 U9F sing 407 n n 
C22 C21 U9F sing 408 n n 
C21 N20 U9F sing 409 n n 
O25 C24 U9F doub 410 n n 
N20 C24 U9F sing 411 n n 
N20 C18 U9F sing 412 n n 
C24 N26 U9F sing 413 n n 
O19 C18 U9F doub 414 n n 
C18 C17 U9F sing 415 n n 
F16 C15 U9F sing 416 n n 
N26 C27 U9F sing 417 n n 
N26 C68 U9F sing 418 n n 
C67 C27 U9F doub 419 n y 
C67 C31 U9F sing 420 n y 
C27 C28 U9F sing 421 n y 
C17 C68 U9F sing 422 n n 
C17 C07 U9F doub 423 n n 
N32 C31 U9F sing 424 n n 
N32 C33 U9F sing 425 n n 
C35 C33 U9F sing 426 n n 
C35 C36 U9F sing 427 n n 
C31 C30 U9F doub 428 n y 
N08 C07 U9F sing 429 n n 
N08 C09 U9F sing 430 n n 
C15 C09 U9F doub 431 n y 
C15 C14 U9F sing 432 n y 
C68 C02 U9F doub 433 n n 
C28 C29 U9F doub 434 n y 
C33 O34 U9F doub 435 n n 
C07 N05 U9F sing 436 n n 
C09 C10 U9F sing 437 n y 
C14 C12 U9F doub 438 n y 
C36 O37 U9F sing 439 n n 
C30 C29 U9F sing 440 n y 
C02 C03 U9F sing 441 n n 
C02 C01 U9F sing 442 n n 
O37 C38 U9F sing 443 n n 
N05 C03 U9F sing 444 n n 
N05 C06 U9F sing 445 n n 
C10 C11 U9F doub 446 n y 
C12 C11 U9F sing 447 n y 
C12 I13 U9F sing 448 n n 
C03 O04 U9F doub 449 n n 
C38 C39 U9F sing 450 n n 
C39 O40 U9F sing 451 n n 
O40 C41 U9F sing 452 n n 
C41 C42 U9F sing 453 n n 
C42 N43 U9F sing 454 n n 
N43 C44 U9F sing 455 n n 
C44 O45 U9F doub 456 n n 
C44 C46 U9F sing 457 n n 
C46 C47 U9F sing 458 n n 
C47 C48 U9F sing 459 n n 
C48 C49 U9F sing 460 n n 
C48 N66 U9F doub 461 n n 
C49 C50 U9F doub 462 n n 
F64 B63 U9F sing 463 n n 
F65 B63 U9F sing 464 n n 
N66 B63 U9F sing 465 n n 
N66 C51 U9F sing 466 n n 
C50 C51 U9F sing 467 n n 
B63 N62 U9F sing 468 n n 
C59 C58 U9F sing 469 n y 
C59 C60 U9F doub 470 n y 
C51 C52 U9F doub 471 n n 
C58 C57 U9F doub 472 n y 
C60 N61 U9F sing 473 n y 
N62 C56 U9F sing 474 n y 
N62 C53 U9F sing 475 n y 
C57 N61 U9F sing 476 n y 
C57 C56 U9F sing 477 n n 
C52 C53 U9F sing 478 n n 
C56 C55 U9F doub 479 n y 
C53 C54 U9F doub 480 n y 
C55 C54 U9F sing 481 n y 
C01 H1 U9F sing 482 n n 
C01 H2 U9F sing 483 n n 
C01 H3 U9F sing 484 n n 
C06 H4 U9F sing 485 n n 
C06 H5 U9F sing 486 n n 
C06 H6 U9F sing 487 n n 
C10 H7 U9F sing 488 n n 
C11 H8 U9F sing 489 n n 
C14 H9 U9F sing 490 n n 
C21 H10 U9F sing 491 n n 
C22 H11 U9F sing 492 n n 
C22 H12 U9F sing 493 n n 
C23 H13 U9F sing 494 n n 
C23 H14 U9F sing 495 n n 
C28 H15 U9F sing 496 n n 
C29 H16 U9F sing 497 n n 
C30 H17 U9F sing 498 n n 
C35 H18 U9F sing 499 n n 
C35 H19 U9F sing 500 n n 
C36 H20 U9F sing 501 n n 
C36 H21 U9F sing 502 n n 
C38 H22 U9F sing 503 n n 
C38 H23 U9F sing 504 n n 
C39 H24 U9F sing 505 n n 
C39 H25 U9F sing 506 n n 
C41 H26 U9F sing 507 n n 
C41 H27 U9F sing 508 n n 
C42 H28 U9F sing 509 n n 
C42 H29 U9F sing 510 n n 
C46 H30 U9F sing 511 n n 
C46 H31 U9F sing 512 n n 
C47 H32 U9F sing 513 n n 
C47 H33 U9F sing 514 n n 
C49 H34 U9F sing 515 n n 
C50 H35 U9F sing 516 n n 
C52 H36 U9F sing 517 n n 
C54 H38 U9F sing 518 n n 
C55 H39 U9F sing 519 n n 
C58 H40 U9F sing 520 n n 
C59 H41 U9F sing 521 n n 
C60 H42 U9F sing 522 n n 
C67 H43 U9F sing 523 n n 
N08 H44 U9F sing 524 n n 
N32 H45 U9F sing 525 n n 
N43 H46 U9F sing 526 n n 
N61 H47 U9F sing 527 n n 
#
_atom_sites.entry_id                     7UMB 
_atom_sites.fract_transf_matrix[1][1]    0.007168 
_atom_sites.fract_transf_matrix[1][2]    0.004139 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008277 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004545 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP B 1 1001 1001 ANP ANP . 
D 3 ANP C 1 401 401 ANP ANP . 
E 4 U9F C 1 402 601 U9F MTB . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 B B63 U9F . . . E 4 -48.108 66.849 25.01 1 187.99 ? B63 U9F 402 C 1 
HETATM 2 C C01 U9F . . . E 4 -53.379 73.72 12.995 1 140.72 ? C01 U9F 402 C 1 
HETATM 3 C C02 U9F . . . E 4 -53.785 74.983 12.221 1 138.26 ? C02 U9F 402 C 1 
HETATM 4 C C03 U9F . . . E 4 -54.684 75.749 12.994 1 138 ? C03 U9F 402 C 1 
HETATM 5 C C06 U9F . . . E 4 -56.105 77.535 13.457 1 144.53 ? C06 U9F 402 C 1 
HETATM 6 C C07 U9F . . . E 4 -54.816 77.351 11.299 1 138.78 ? C07 U9F 402 C 1 
HETATM 7 C C09 U9F . . . E 4 -54.934 80.001 11.463 1 145.16 ? C09 U9F 402 C 1 
HETATM 8 C C10 U9F . . . E 4 -54.422 80.062 12.775 1 150.88 ? C10 U9F 402 C 1 
HETATM 9 C C11 U9F . . . E 4 -54.096 81.263 13.439 1 162.85 ? C11 U9F 402 C 1 
HETATM 10 C C12 U9F . . . E 4 -54.248 82.504 12.815 1 175.89 ? C12 U9F 402 C 1 
HETATM 11 C C14 U9F . . . E 4 -54.743 82.478 11.507 1 171.21 ? C14 U9F 402 C 1 
HETATM 12 C C15 U9F . . . E 4 -55.078 81.27 10.852 1 155.31 ? C15 U9F 402 C 1 
HETATM 13 C C17 U9F . . . E 4 -53.893 76.607 10.431 1 141.56 ? C17 U9F 402 C 1 
HETATM 14 C C18 U9F . . . E 4 -53.544 77.118 9.136 1 143.73 ? C18 U9F 402 C 1 
HETATM 15 C C21 U9F . . . E 4 -52.361 77.003 6.972 1 152.54 ? C21 U9F 402 C 1 
HETATM 16 C C22 U9F . . . E 4 -52.968 78.057 6.018 1 151.23 ? C22 U9F 402 C 1 
HETATM 17 C C23 U9F . . . E 4 -53.132 76.57 5.714 1 145.38 ? C23 U9F 402 C 1 
HETATM 18 C C24 U9F . . . E 4 -52.139 75.285 8.717 1 144.5 ? C24 U9F 402 C 1 
HETATM 19 C C27 U9F . . . E 4 -51.753 73.627 10.335 1 139.43 ? C27 U9F 402 C 1 
HETATM 20 C C28 U9F . . . E 4 -50.784 74.115 11.243 1 133.33 ? C28 U9F 402 C 1 
HETATM 21 C C29 U9F . . . E 4 -49.843 73.345 11.921 1 125.37 ? C29 U9F 402 C 1 
HETATM 22 C C30 U9F . . . E 4 -49.791 71.998 11.645 1 129.14 ? C30 U9F 402 C 1 
HETATM 23 C C31 U9F . . . E 4 -50.697 71.462 10.724 1 141.03 ? C31 U9F 402 C 1 
HETATM 24 C C33 U9F . . . E 4 -49.811 69.029 11.259 1 137.99 ? C33 U9F 402 C 1 
HETATM 25 C C35 U9F . . . E 4 -49.939 67.58 10.708 1 123.67 ? C35 U9F 402 C 1 
HETATM 26 C C36 U9F . . . E 4 -49.295 66.464 11.547 1 115.65 ? C36 U9F 402 C 1 
HETATM 27 C C38 U9F . . . E 4 -49.937 66.577 13.813 1 133.3 ? C38 U9F 402 C 1 
HETATM 28 C C39 U9F . . . E 4 -50.716 65.791 14.904 1 126.15 ? C39 U9F 402 C 1 
HETATM 29 C C41 U9F . . . E 4 -51.688 66.572 16.915 1 142.66 ? C41 U9F 402 C 1 
HETATM 30 C C42 U9F . . . E 4 -51.365 67.212 18.295 1 140.38 ? C42 U9F 402 C 1 
HETATM 31 C C44 U9F . . . E 4 -49.846 66.444 20.243 1 154.4 ? C44 U9F 402 C 1 
HETATM 32 C C46 U9F . . . E 4 -49.381 65.326 21.229 1 159.59 ? C46 U9F 402 C 1 
HETATM 33 C C47 U9F . . . E 4 -47.989 65.591 21.915 1 169.69 ? C47 U9F 402 C 1 
HETATM 34 C C48 U9F . . . E 4 -47.811 64.843 23.284 1 182.85 ? C48 U9F 402 C 1 
HETATM 35 C C49 U9F . . . E 4 -47.566 63.462 23.412 1 174.86 ? C49 U9F 402 C 1 
HETATM 36 C C50 U9F . . . E 4 -47.477 63.178 24.796 1 170.46 ? C50 U9F 402 C 1 
HETATM 37 C C51 U9F . . . E 4 -47.682 64.428 25.486 1 180.66 ? C51 U9F 402 C 1 
HETATM 38 C C52 U9F . . . E 4 -47.705 64.751 26.926 1 172.9 ? C52 U9F 402 C 1 
HETATM 39 C C53 U9F . . . E 4 -47.72 66.153 27.389 1 182.68 ? C53 U9F 402 C 1 
HETATM 40 C C54 U9F . . . E 4 -47.553 66.709 28.715 1 177.53 ? C54 U9F 402 C 1 
HETATM 41 C C55 U9F . . . E 4 -47.648 68.107 28.564 1 185.37 ? C55 U9F 402 C 1 
HETATM 42 C C56 U9F . . . E 4 -47.858 68.395 27.193 1 191.31 ? C56 U9F 402 C 1 
HETATM 43 C C57 U9F . . . E 4 -48.028 69.719 26.633 1 186.69 ? C57 U9F 402 C 1 
HETATM 44 C C58 U9F . . . E 4 -47.274 70.344 25.618 1 181.32 ? C58 U9F 402 C 1 
HETATM 45 C C59 U9F . . . E 4 -47.808 71.617 25.388 1 172.89 ? C59 U9F 402 C 1 
HETATM 46 C C60 U9F . . . E 4 -48.877 71.729 26.274 1 175.75 ? C60 U9F 402 C 1 
HETATM 47 C C67 U9F . . . E 4 -51.678 72.255 10.042 1 146.48 ? C67 U9F 402 C 1 
HETATM 48 C C68 U9F . . . E 4 -53.339 75.404 10.855 1 138.97 ? C68 U9F 402 C 1 
HETATM 49 F F16 U9F . . . E 4 -55.547 81.391 9.582 1 156.91 ? F16 U9F 402 C 1 
HETATM 50 F F64 U9F . . . E 4 -47.05 67.788 24.09 1 182.68 ? F64 U9F 402 C 1 
HETATM 51 F F65 U9F . . . E 4 -49.677 67.279 24.566 1 182.62 ? F65 U9F 402 C 1 
HETATM 52 I I13 U9F . . . E 4 -53.759 84.325 13.794 1 369.23 ? I13 U9F 402 C 1 
HETATM 53 N N05 U9F . . . E 4 -55.169 76.886 12.53 1 138.91 ? N05 U9F 402 C 1 
HETATM 54 N N08 U9F . . . E 4 -55.322 78.673 10.789 1 143.46 ? N08 U9F 402 C 1 
HETATM 55 N N20 U9F . . . E 4 -52.694 76.467 8.319 1 147.63 ? N20 U9F 402 C 1 
HETATM 56 N N26 U9F . . . E 4 -52.47 74.713 9.933 1 137.05 ? N26 U9F 402 C 1 
HETATM 57 N N32 U9F . . . E 4 -50.599 70.013 10.471 1 140.27 ? N32 U9F 402 C 1 
HETATM 58 N N43 U9F . . . E 4 -50.919 66.171 19.25 1 141.64 ? N43 U9F 402 C 1 
HETATM 59 N N61 U9F . . . E 4 -48.976 70.605 26.981 1 181.47 ? N61 U9F 402 C 1 
HETATM 60 N N62 U9F . . . E 4 -47.901 67.164 26.508 1 191.7 ? N62 U9F 402 C 1 
HETATM 61 N N66 U9F . . . E 4 -47.874 65.393 24.574 1 192.47 ? N66 U9F 402 C 1 
HETATM 62 O O04 U9F . . . E 4 -55.038 75.399 14.087 1 137.51 ? O04 U9F 402 C 1 
HETATM 63 O O19 U9F . . . E 4 -54.006 78.147 8.776 1 141.06 ? O19 U9F 402 C 1 
HETATM 64 O O25 U9F . . . E 4 -51.385 74.758 7.953 1 149.47 ? O25 U9F 402 C 1 
HETATM 65 O O34 U9F . . . E 4 -49.14 69.295 12.23 1 131.07 ? O34 U9F 402 C 1 
HETATM 66 O O37 U9F . . . E 4 -50.228 66.032 12.526 1 121 ? O37 U9F 402 C 1 
HETATM 67 O O40 U9F . . . E 4 -50.499 66.464 16.131 1 134.49 ? O40 U9F 402 C 1 
HETATM 68 O O45 U9F . . . E 4 -49.334 67.519 20.286 1 155.9 ? O45 U9F 402 C 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           381 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           68 
#