data_7UMG # _model_server_result.job_id amMxcOvrVmb2eyNErcrAJw _model_server_result.datetime_utc '2024-11-26 01:05:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7umg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7UMG # _exptl.entry_id 7UMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 233.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UMG _cell.length_a 166.495 _cell.length_b 166.495 _cell.length_c 166.495 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 C SG CYS 23 C CYS 22 1_555 C SG CYS 95 C CYS 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 C SG CYS 23 C CYS 22 1_555 C SG CYS 95 C CYS 94 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 D SG CYS 23 D CYS 22 1_555 D SG CYS 95 D CYS 94 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 D SG CYS 23 D CYS 22 1_555 D SG CYS 95 D CYS 94 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C9 30W . A 30W 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? # _chem_comp.formula 'C9 H7 N5 O3' _chem_comp.formula_weight 233.184 _chem_comp.id 30W _chem_comp.mon_nstd_flag . _chem_comp.name N-(6-formyl-4-oxo-3,4-dihydropteridin-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Acetyl 6-formylpterin' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C6 30W sing 1 n n C6 C7 30W doub 2 n y C6 N5 30W sing 3 n y C7 N8 30W sing 4 n y N5 C4A 30W doub 5 n y N8 C8A 30W doub 6 n y C4A C8A 30W sing 7 n y C4A C4 30W sing 8 n n C8A N1 30W sing 9 n n O4 C4 30W doub 10 n n C4 N3 30W sing 11 n n N1 C2 30W doub 12 n n N3 C2 30W sing 13 n n C2 N2 30W sing 14 n n O10 C10 30W doub 15 n n N2 C10 30W sing 16 n n C10 C11 30W sing 17 n n C11 H1 30W sing 18 n n C11 H2 30W sing 19 n n C11 H3 30W sing 20 n n C7 H4 30W sing 21 n n C9 H5 30W sing 22 n n N2 H8 30W sing 23 n n N3 H9 30W sing 24 n n C9 O9 30W doub 25 n n # _atom_sites.entry_id 7UMG _atom_sites.fract_transf_matrix[1][1] 0.006006 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 30W A 1 301 301 30W AFP . F 5 PO4 A 1 302 1 PO4 PO4 . G 6 CL A 1 303 1 CL CL . H 7 HOH A 1 401 2 HOH HOH . H 7 HOH A 2 402 100 HOH HOH . H 7 HOH A 3 403 143 HOH HOH . H 7 HOH A 4 404 117 HOH HOH . H 7 HOH A 5 405 153 HOH HOH . H 7 HOH A 6 406 36 HOH HOH . H 7 HOH A 7 407 151 HOH HOH . H 7 HOH A 8 408 33 HOH HOH . H 7 HOH A 9 409 16 HOH HOH . H 7 HOH A 10 410 23 HOH HOH . H 7 HOH A 11 411 168 HOH HOH . H 7 HOH A 12 412 47 HOH HOH . H 7 HOH A 13 413 8 HOH HOH . H 7 HOH A 14 414 126 HOH HOH . H 7 HOH A 15 415 57 HOH HOH . H 7 HOH A 16 416 96 HOH HOH . H 7 HOH A 17 417 6 HOH HOH . H 7 HOH A 18 418 1 HOH HOH . H 7 HOH A 19 419 84 HOH HOH . H 7 HOH A 20 420 170 HOH HOH . H 7 HOH A 21 421 56 HOH HOH . H 7 HOH A 22 422 7 HOH HOH . H 7 HOH A 23 423 130 HOH HOH . H 7 HOH A 24 424 14 HOH HOH . H 7 HOH A 25 425 41 HOH HOH . H 7 HOH A 26 426 15 HOH HOH . H 7 HOH A 27 427 113 HOH HOH . H 7 HOH A 28 428 158 HOH HOH . H 7 HOH A 29 429 118 HOH HOH . H 7 HOH A 30 430 161 HOH HOH . H 7 HOH A 31 431 3 HOH HOH . H 7 HOH A 32 432 122 HOH HOH . H 7 HOH A 33 433 46 HOH HOH . H 7 HOH A 34 434 49 HOH HOH . H 7 HOH A 35 435 12 HOH HOH . H 7 HOH A 36 436 45 HOH HOH . H 7 HOH A 37 437 101 HOH HOH . H 7 HOH A 38 438 182 HOH HOH . H 7 HOH A 39 439 52 HOH HOH . H 7 HOH A 40 440 160 HOH HOH . H 7 HOH A 41 441 116 HOH HOH . H 7 HOH A 42 442 43 HOH HOH . H 7 HOH A 43 443 53 HOH HOH . H 7 HOH A 44 444 138 HOH HOH . H 7 HOH A 45 445 17 HOH HOH . H 7 HOH A 46 446 34 HOH HOH . H 7 HOH A 47 447 59 HOH HOH . H 7 HOH A 48 448 88 HOH HOH . H 7 HOH A 49 449 44 HOH HOH . H 7 HOH A 50 450 51 HOH HOH . H 7 HOH A 51 451 32 HOH HOH . H 7 HOH A 52 452 73 HOH HOH . H 7 HOH A 53 453 134 HOH HOH . H 7 HOH A 54 454 28 HOH HOH . H 7 HOH A 55 455 69 HOH HOH . H 7 HOH A 56 456 140 HOH HOH . H 7 HOH A 57 457 55 HOH HOH . H 7 HOH A 58 458 25 HOH HOH . H 7 HOH A 59 459 104 HOH HOH . H 7 HOH A 60 460 165 HOH HOH . H 7 HOH A 61 461 98 HOH HOH . H 7 HOH A 62 462 185 HOH HOH . H 7 HOH A 63 463 135 HOH HOH . H 7 HOH A 64 464 27 HOH HOH . H 7 HOH A 65 465 58 HOH HOH . H 7 HOH A 66 466 106 HOH HOH . H 7 HOH A 67 467 86 HOH HOH . H 7 HOH A 68 468 154 HOH HOH . H 7 HOH A 69 469 111 HOH HOH . H 7 HOH A 70 470 92 HOH HOH . H 7 HOH A 71 471 177 HOH HOH . H 7 HOH A 72 472 61 HOH HOH . H 7 HOH A 73 473 94 HOH HOH . H 7 HOH A 74 474 97 HOH HOH . H 7 HOH A 75 475 70 HOH HOH . I 7 HOH B 1 101 30 HOH HOH . I 7 HOH B 2 102 4 HOH HOH . I 7 HOH B 3 103 81 HOH HOH . I 7 HOH B 4 104 65 HOH HOH . I 7 HOH B 5 105 120 HOH HOH . I 7 HOH B 6 106 9 HOH HOH . I 7 HOH B 7 107 171 HOH HOH . I 7 HOH B 8 108 128 HOH HOH . I 7 HOH B 9 109 179 HOH HOH . I 7 HOH B 10 110 11 HOH HOH . I 7 HOH B 11 111 79 HOH HOH . I 7 HOH B 12 112 63 HOH HOH . I 7 HOH B 13 113 19 HOH HOH . I 7 HOH B 14 114 121 HOH HOH . I 7 HOH B 15 115 169 HOH HOH . I 7 HOH B 16 116 85 HOH HOH . I 7 HOH B 17 117 29 HOH HOH . I 7 HOH B 18 118 10 HOH HOH . I 7 HOH B 19 119 91 HOH HOH . I 7 HOH B 20 120 54 HOH HOH . I 7 HOH B 21 121 39 HOH HOH . I 7 HOH B 22 122 132 HOH HOH . I 7 HOH B 23 123 42 HOH HOH . I 7 HOH B 24 124 24 HOH HOH . I 7 HOH B 25 125 178 HOH HOH . I 7 HOH B 26 126 60 HOH HOH . I 7 HOH B 27 127 89 HOH HOH . I 7 HOH B 28 128 68 HOH HOH . I 7 HOH B 29 129 172 HOH HOH . I 7 HOH B 30 130 67 HOH HOH . I 7 HOH B 31 131 66 HOH HOH . I 7 HOH B 32 132 183 HOH HOH . I 7 HOH B 33 133 152 HOH HOH . I 7 HOH B 34 134 150 HOH HOH . I 7 HOH B 35 135 148 HOH HOH . I 7 HOH B 36 136 95 HOH HOH . I 7 HOH B 37 137 176 HOH HOH . J 7 HOH C 1 201 40 HOH HOH . J 7 HOH C 2 202 76 HOH HOH . J 7 HOH C 3 203 155 HOH HOH . J 7 HOH C 4 204 110 HOH HOH . J 7 HOH C 5 205 181 HOH HOH . J 7 HOH C 6 206 167 HOH HOH . J 7 HOH C 7 207 71 HOH HOH . J 7 HOH C 8 208 131 HOH HOH . J 7 HOH C 9 209 62 HOH HOH . K 7 HOH D 1 201 180 HOH HOH . K 7 HOH D 2 202 83 HOH HOH . K 7 HOH D 3 203 31 HOH HOH . K 7 HOH D 4 204 125 HOH HOH . K 7 HOH D 5 205 184 HOH HOH . K 7 HOH D 6 206 133 HOH HOH . K 7 HOH D 7 207 72 HOH HOH . K 7 HOH D 8 208 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 30W . . . E 4 27.851 53.714 -44.692 1 48.56 ? C4 30W 301 A 1 HETATM 2 C C6 30W . . . E 4 28.483 56.12 -47.357 1 48.85 ? C6 30W 301 A 1 HETATM 3 C C11 30W . . . E 4 31.135 52.155 -40.273 1 50.29 ? C11 30W 301 A 1 HETATM 4 C C7 30W . . . E 4 29.63 56.759 -46.895 1 49.44 ? C7 30W 301 A 1 HETATM 5 C C9 30W . . . E 4 27.864 56.422 -48.675 1 48.56 ? C9 30W 301 A 1 HETATM 6 C C10 30W . . . E 4 30.195 52.411 -41.415 1 49.79 ? C10 30W 301 A 1 HETATM 7 N N1 30W . . . E 4 30.25 55.047 -43.866 1 49.75 ? N1 30W 301 A 1 HETATM 8 N N2 30W . . . E 4 30.431 53.546 -42.134 1 49.87 ? N2 30W 301 A 1 HETATM 9 N N3 30W . . . E 4 28.572 53.406 -43.566 1 48.92 ? N3 30W 301 A 1 HETATM 10 O O10 30W . . . E 4 29.284 51.639 -41.701 1 56.68 ? O10 30W 301 A 1 HETATM 11 C C2 30W . . . E 4 29.719 54.046 -43.197 1 50.09 ? C2 30W 301 A 1 HETATM 12 C C8A 30W . . . E 4 29.657 55.472 -45.039 1 49.43 ? C8A 30W 301 A 1 HETATM 13 N N8 30W . . . E 4 30.24 56.458 -45.74 1 49.75 ? N8 30W 301 A 1 HETATM 14 N N5 30W . . . E 4 27.888 55.151 -46.643 1 48.55 ? N5 30W 301 A 1 HETATM 15 C C4A 30W . . . E 4 28.456 54.808 -45.479 1 48.83 ? C4A 30W 301 A 1 HETATM 16 O O4 30W . . . E 4 26.8 53.134 -44.956 1 48.09 ? O4 30W 301 A 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #