data_7UMP
#
_model_server_result.job_id            cOmDB7AcvslZ6AXDVUSymQ 
_model_server_result.datetime_utc      '2024-11-28 04:17:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ump 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    7UMP 
#
_exptl.entry_id    7UMP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7UMP 
_cell.length_a            111.4 
_cell.length_b            111.4 
_cell.length_c            40.42 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UMP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 126 A HIS 313 1_555 B FE FE2 . A FE2 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc2 A OD2 ASP 128 A ASP 315 1_555 B FE FE2 . A FE2 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc3 A NE2 HIS 187 A HIS 374 1_555 B FE FE2 . A FE2 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc4 B FE FE2 . A FE2 1001 1_555 C O10 A1Z . A A1Z 1002 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc5 B FE FE2 . A FE2 1001 1_555 C O10 A1Z . A A1Z 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 B FE FE2 . A FE2 1001 1_555 C N11 A1Z . A A1Z 1002 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc7 B FE FE2 . A FE2 1001 1_555 C N11 A1Z . A A1Z 1002 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc8 B FE FE2 . A FE2 1001 1_555 E O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 116 n n 
C1 C2 EDO sing 117 n n 
C1 H11 EDO sing 118 n n 
C1 H12 EDO sing 119 n n 
O1 HO1 EDO sing 120 n n 
C2 O2 EDO sing 121 n n 
C2 H21 EDO sing 122 n n 
C2 H22 EDO sing 123 n n 
O2 HO2 EDO sing 124 n n 
#
_atom_sites.entry_id                     7UMP 
_atom_sites.fract_transf_matrix[1][1]    0.008977 
_atom_sites.fract_transf_matrix[1][2]    0.005183 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02474 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 1001 1001 FE2 FE2 . 
C 3 A1Z A 1 1002 1 A1Z LIG . 
D 4 EDO A 1 1003 1 EDO EDO . 
E 5 HOH A 1 1101 108 HOH HOH . 
E 5 HOH A 2 1102 102 HOH HOH . 
E 5 HOH A 3 1103 120 HOH HOH . 
E 5 HOH A 4 1104 116 HOH HOH . 
E 5 HOH A 5 1105 49 HOH HOH . 
E 5 HOH A 6 1106 55 HOH HOH . 
E 5 HOH A 7 1107 100 HOH HOH . 
E 5 HOH A 8 1108 2 HOH HOH . 
E 5 HOH A 9 1109 53 HOH HOH . 
E 5 HOH A 10 1110 16 HOH HOH . 
E 5 HOH A 11 1111 126 HOH HOH . 
E 5 HOH A 12 1112 122 HOH HOH . 
E 5 HOH A 13 1113 47 HOH HOH . 
E 5 HOH A 14 1114 7 HOH HOH . 
E 5 HOH A 15 1115 69 HOH HOH . 
E 5 HOH A 16 1116 128 HOH HOH . 
E 5 HOH A 17 1117 112 HOH HOH . 
E 5 HOH A 18 1118 56 HOH HOH . 
E 5 HOH A 19 1119 88 HOH HOH . 
E 5 HOH A 20 1120 91 HOH HOH . 
E 5 HOH A 21 1121 77 HOH HOH . 
E 5 HOH A 22 1122 11 HOH HOH . 
E 5 HOH A 23 1123 17 HOH HOH . 
E 5 HOH A 24 1124 89 HOH HOH . 
E 5 HOH A 25 1125 94 HOH HOH . 
E 5 HOH A 26 1126 117 HOH HOH . 
E 5 HOH A 27 1127 41 HOH HOH . 
E 5 HOH A 28 1128 65 HOH HOH . 
E 5 HOH A 29 1129 95 HOH HOH . 
E 5 HOH A 30 1130 32 HOH HOH . 
E 5 HOH A 31 1131 8 HOH HOH . 
E 5 HOH A 32 1132 99 HOH HOH . 
E 5 HOH A 33 1133 34 HOH HOH . 
E 5 HOH A 34 1134 119 HOH HOH . 
E 5 HOH A 35 1135 59 HOH HOH . 
E 5 HOH A 36 1136 3 HOH HOH . 
E 5 HOH A 37 1137 36 HOH HOH . 
E 5 HOH A 38 1138 22 HOH HOH . 
E 5 HOH A 39 1139 44 HOH HOH . 
E 5 HOH A 40 1140 45 HOH HOH . 
E 5 HOH A 41 1141 23 HOH HOH . 
E 5 HOH A 42 1142 13 HOH HOH . 
E 5 HOH A 43 1143 28 HOH HOH . 
E 5 HOH A 44 1144 12 HOH HOH . 
E 5 HOH A 45 1145 90 HOH HOH . 
E 5 HOH A 46 1146 62 HOH HOH . 
E 5 HOH A 47 1147 38 HOH HOH . 
E 5 HOH A 48 1148 42 HOH HOH . 
E 5 HOH A 49 1149 87 HOH HOH . 
E 5 HOH A 50 1150 9 HOH HOH . 
E 5 HOH A 51 1151 123 HOH HOH . 
E 5 HOH A 52 1152 97 HOH HOH . 
E 5 HOH A 53 1153 58 HOH HOH . 
E 5 HOH A 54 1154 4 HOH HOH . 
E 5 HOH A 55 1155 111 HOH HOH . 
E 5 HOH A 56 1156 86 HOH HOH . 
E 5 HOH A 57 1157 1 HOH HOH . 
E 5 HOH A 58 1158 129 HOH HOH . 
E 5 HOH A 59 1159 51 HOH HOH . 
E 5 HOH A 60 1160 71 HOH HOH . 
E 5 HOH A 61 1161 5 HOH HOH . 
E 5 HOH A 62 1162 26 HOH HOH . 
E 5 HOH A 63 1163 109 HOH HOH . 
E 5 HOH A 64 1164 18 HOH HOH . 
E 5 HOH A 65 1165 115 HOH HOH . 
E 5 HOH A 66 1166 21 HOH HOH . 
E 5 HOH A 67 1167 30 HOH HOH . 
E 5 HOH A 68 1168 57 HOH HOH . 
E 5 HOH A 69 1169 39 HOH HOH . 
E 5 HOH A 70 1170 27 HOH HOH . 
E 5 HOH A 71 1171 104 HOH HOH . 
E 5 HOH A 72 1172 6 HOH HOH . 
E 5 HOH A 73 1173 54 HOH HOH . 
E 5 HOH A 74 1174 72 HOH HOH . 
E 5 HOH A 75 1175 114 HOH HOH . 
E 5 HOH A 76 1176 70 HOH HOH . 
E 5 HOH A 77 1177 92 HOH HOH . 
E 5 HOH A 78 1178 103 HOH HOH . 
E 5 HOH A 79 1179 64 HOH HOH . 
E 5 HOH A 80 1180 15 HOH HOH . 
E 5 HOH A 81 1181 33 HOH HOH . 
E 5 HOH A 82 1182 20 HOH HOH . 
E 5 HOH A 83 1183 78 HOH HOH . 
E 5 HOH A 84 1184 14 HOH HOH . 
E 5 HOH A 85 1185 67 HOH HOH . 
E 5 HOH A 86 1186 81 HOH HOH . 
E 5 HOH A 87 1187 29 HOH HOH . 
E 5 HOH A 88 1188 113 HOH HOH . 
E 5 HOH A 89 1189 10 HOH HOH . 
E 5 HOH A 90 1190 74 HOH HOH . 
E 5 HOH A 91 1191 101 HOH HOH . 
E 5 HOH A 92 1192 98 HOH HOH . 
E 5 HOH A 93 1193 50 HOH HOH . 
E 5 HOH A 94 1194 66 HOH HOH . 
E 5 HOH A 95 1195 96 HOH HOH . 
E 5 HOH A 96 1196 19 HOH HOH . 
E 5 HOH A 97 1197 24 HOH HOH . 
E 5 HOH A 98 1198 68 HOH HOH . 
E 5 HOH A 99 1199 83 HOH HOH . 
E 5 HOH A 100 1200 25 HOH HOH . 
E 5 HOH A 101 1201 48 HOH HOH . 
E 5 HOH A 102 1202 79 HOH HOH . 
E 5 HOH A 103 1203 76 HOH HOH . 
E 5 HOH A 104 1204 31 HOH HOH . 
E 5 HOH A 105 1205 93 HOH HOH . 
E 5 HOH A 106 1206 121 HOH HOH . 
E 5 HOH A 107 1207 106 HOH HOH . 
E 5 HOH A 108 1208 105 HOH HOH . 
E 5 HOH A 109 1209 35 HOH HOH . 
E 5 HOH A 110 1210 46 HOH HOH . 
E 5 HOH A 111 1211 127 HOH HOH . 
E 5 HOH A 112 1212 43 HOH HOH . 
E 5 HOH A 113 1213 40 HOH HOH . 
E 5 HOH A 114 1214 82 HOH HOH . 
E 5 HOH A 115 1215 73 HOH HOH . 
E 5 HOH A 116 1216 124 HOH HOH . 
E 5 HOH A 117 1217 85 HOH HOH . 
E 5 HOH A 118 1218 80 HOH HOH . 
E 5 HOH A 119 1219 75 HOH HOH . 
E 5 HOH A 120 1220 118 HOH HOH . 
E 5 HOH A 121 1221 52 HOH HOH . 
E 5 HOH A 122 1222 37 HOH HOH . 
E 5 HOH A 123 1223 61 HOH HOH . 
E 5 HOH A 124 1224 63 HOH HOH . 
E 5 HOH A 125 1225 107 HOH HOH . 
E 5 HOH A 126 1226 110 HOH HOH . 
E 5 HOH A 127 1227 125 HOH HOH . 
E 5 HOH A 128 1228 84 HOH HOH . 
E 5 HOH A 129 1229 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 34.129 -40.46 -15.263 1 37.55 ? C1 EDO 1003 A 1 
HETATM 2 O O1 EDO . . . D 4 32.812 -40.828 -15.676 1 35.62 ? O1 EDO 1003 A 1 
HETATM 3 C C2 EDO . . . D 4 35.028 -40.396 -16.491 1 39.37 ? C2 EDO 1003 A 1 
HETATM 4 O O2 EDO . . . D 4 34.504 -39.45 -17.429 1 39.7 ? O2 EDO 1003 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#