data_7UMR # _model_server_result.job_id Tin5bOssndY16CBAzeYCyQ _model_server_result.datetime_utc '2024-11-16 07:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7umr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 7UMR # _exptl.entry_id 7UMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 419.43 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1P,18Z)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2(28),5,11(27),12,14,18,22,24-nonaene-4,7-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UMR _cell.length_a 89.511 _cell.length_b 89.511 _cell.length_c 131.519 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B MN MN . A MN 201 1_555 E O4 NVR . A NVR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc8 B MN MN . A MN 201 1_555 E O5 NVR . A NVR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc9 C MN MN . A MN 202 1_555 E O4 NVR . A NVR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc10 C MN MN . A MN 202 1_555 E O1 NVR . A NVR 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc11 C MN MN . A MN 202 1_555 H O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc12 C MN MN . A MN 202 1_555 H O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? # _chem_comp.formula 'C23 H21 N3 O5' _chem_comp.formula_weight 419.43 _chem_comp.id NVR _chem_comp.mon_nstd_flag . _chem_comp.name (1P,18Z)-5-hydroxy-16,21-dioxa-3,8,28-triazatetracyclo[20.3.1.1~2,6~.1~11,15~]octacosa-1(26),2(28),5,11(27),12,14,18,22,24-nonaene-4,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'SJ001034732-1 (Cis-form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C23 NVR doub 237 n n O4 C22 NVR sing 238 n n C23 C22 NVR sing 239 n n C23 N3 NVR sing 240 n n C22 C10 NVR doub 241 n n N3 C11 NVR sing 242 n n O1 C1 NVR doub 243 n n C10 C1 NVR sing 244 n n C10 N2 NVR sing 245 n n C11 N2 NVR doub 246 n n C11 C12 NVR sing 247 n n C1 N1 NVR sing 248 n n C13 C12 NVR doub 249 n y C13 C14 NVR sing 250 n y C12 C21 NVR sing 251 n y C14 C15 NVR doub 252 n y N1 C2 NVR sing 253 n n C21 C16 NVR doub 254 n y C15 C16 NVR sing 255 n y C2 C3 NVR sing 256 n n C16 O2 NVR sing 257 n n C18 C17 NVR sing 258 n n C18 C19 NVR doub 259 z n C17 O2 NVR sing 260 n n C9 C8 NVR doub 261 n y C9 C4 NVR sing 262 n y C19 C20 NVR sing 263 n n C8 C7 NVR sing 264 n y C3 C4 NVR sing 265 n n C4 C5 NVR doub 266 n y C7 C6 NVR doub 267 n y C5 C6 NVR sing 268 n y C6 O3 NVR sing 269 n n C20 O3 NVR sing 270 n n N1 H1 NVR sing 271 n n C2 H2 NVR sing 272 n n C2 H3 NVR sing 273 n n C3 H4 NVR sing 274 n n C3 H5 NVR sing 275 n n C8 H6 NVR sing 276 n n C9 H7 NVR sing 277 n n C17 H8 NVR sing 278 n n C17 H9 NVR sing 279 n n C19 H10 NVR sing 280 n n C20 H11 NVR sing 281 n n C20 H12 NVR sing 282 n n C21 H13 NVR sing 283 n n C13 H15 NVR sing 284 n n C14 H16 NVR sing 285 n n C15 H17 NVR sing 286 n n C18 H18 NVR sing 287 n n C5 H19 NVR sing 288 n n C7 H20 NVR sing 289 n n O4 H21 NVR sing 290 n n N3 H14 NVR sing 291 n n # _atom_sites.entry_id 7UMR _atom_sites.fract_transf_matrix[1][1] 0.011172 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 QQ4 A 1 203 401 QQ4 PVP . E 4 NVR A 1 204 402 NVR C19 . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 16 HOH HOH . H 6 HOH A 2 302 17 HOH HOH . H 6 HOH A 3 303 7 HOH HOH . H 6 HOH A 4 304 9 HOH HOH . H 6 HOH A 5 305 10 HOH HOH . H 6 HOH A 6 306 1 HOH HOH . H 6 HOH A 7 307 2 HOH HOH . H 6 HOH A 8 308 5 HOH HOH . H 6 HOH A 9 309 13 HOH HOH . H 6 HOH A 10 310 8 HOH HOH . H 6 HOH A 11 311 3 HOH HOH . H 6 HOH A 12 312 4 HOH HOH . H 6 HOH A 13 313 11 HOH HOH . H 6 HOH A 14 314 12 HOH HOH . H 6 HOH A 15 315 14 HOH HOH . H 6 HOH A 16 316 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVR . . . E 4 15.416 42.881 -14.141 1 106.89 ? N1 NVR 204 A 1 HETATM 2 C C2 NVR . . . E 4 15.127 42.036 -12.979 1 106.25 ? C2 NVR 204 A 1 HETATM 3 C C3 NVR . . . E 4 15.223 42.828 -11.649 1 100.36 ? C3 NVR 204 A 1 HETATM 4 C C4 NVR . . . E 4 14.087 42.202 -10.804 1 116.87 ? C4 NVR 204 A 1 HETATM 5 C C6 NVR . . . E 4 11.722 41.77 -10.551 1 125.34 ? C6 NVR 204 A 1 HETATM 6 C C8 NVR . . . E 4 13.304 40.937 -8.904 1 117.43 ? C8 NVR 204 A 1 HETATM 7 C C9 NVR . . . E 4 14.355 41.5 -9.629 1 106.03 ? C9 NVR 204 A 1 HETATM 8 C C10 NVR . . . E 4 15.192 40.89 -15.954 1 103.43 ? C10 NVR 204 A 1 HETATM 9 C C11 NVR . . . E 4 14.528 38.58 -15.394 1 87.62 ? C11 NVR 204 A 1 HETATM 10 C C16 NVR . . . E 4 12.648 37.024 -12.46 1 122.73 ? C16 NVR 204 A 1 HETATM 11 C C17 NVR . . . E 4 10.423 37.716 -11.987 1 126.45 ? C17 NVR 204 A 1 HETATM 12 C C19 NVR . . . E 4 10.573 40.119 -12.657 1 122.86 ? C19 NVR 204 A 1 HETATM 13 C C20 NVR . . . E 4 10.266 41.625 -12.43 1 126.53 ? C20 NVR 204 A 1 HETATM 14 C C21 NVR . . . E 4 13.115 37.937 -13.397 1 112.46 ? C21 NVR 204 A 1 HETATM 15 C C22 NVR . . . E 4 15.423 40.475 -17.283 1 90.62 ? C22 NVR 204 A 1 HETATM 16 C C1 NVR . . . E 4 15.425 42.384 -15.543 1 102.56 ? C1 NVR 204 A 1 HETATM 17 C C12 NVR . . . E 4 14.032 37.552 -14.359 1 101.14 ? C12 NVR 204 A 1 HETATM 18 C C13 NVR . . . E 4 14.487 36.229 -14.401 1 99.67 ? C13 NVR 204 A 1 HETATM 19 C C14 NVR . . . E 4 14.022 35.303 -13.46 1 94.3 ? C14 NVR 204 A 1 HETATM 20 C C15 NVR . . . E 4 13.104 35.7 -12.49 1 109.94 ? C15 NVR 204 A 1 HETATM 21 C C18 NVR . . . E 4 10.121 39.211 -11.781 1 120.84 ? C18 NVR 204 A 1 HETATM 22 C C23 NVR . . . E 4 15.197 39.084 -17.678 1 92.16 ? C23 NVR 204 A 1 HETATM 23 C C5 NVR . . . E 4 12.78 42.331 -11.275 1 122.76 ? C5 NVR 204 A 1 HETATM 24 C C7 NVR . . . E 4 11.987 41.067 -9.366 1 123.88 ? C7 NVR 204 A 1 HETATM 25 N N2 NVR . . . E 4 14.74 39.933 -15.03 1 102.8 ? N2 NVR 204 A 1 HETATM 26 N N3 NVR . . . E 4 14.763 38.159 -16.758 1 91.93 ? N3 NVR 204 A 1 HETATM 27 O O1 NVR . . . E 4 15.724 43.184 -16.369 1 110.33 ? O1 NVR 204 A 1 HETATM 28 O O2 NVR . . . E 4 11.721 37.427 -11.481 1 131.82 ? O2 NVR 204 A 1 HETATM 29 O O3 NVR . . . E 4 10.388 41.913 -11.039 1 139.75 ? O3 NVR 204 A 1 HETATM 30 O O4 NVR . . . E 4 15.847 41.383 -18.265 1 105.97 ? O4 NVR 204 A 1 HETATM 31 O O5 NVR . . . E 4 15.429 38.683 -19.002 1 98.73 ? O5 NVR 204 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #