data_7UMY
#
_model_server_result.job_id            r0U4jtyWCjX7DkFpjI4D_g 
_model_server_result.datetime_utc      '2024-12-03 20:00:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7umy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":301}' 
#
_entry.id    7UMY 
#
_exptl.entry_id    7UMY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              404.462 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-3-[(7S)-7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl]-N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]prop-2-enamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.297 
_cell.angle_gamma         90 
_cell.entry_id            7UMY 
_cell.length_a            256.215 
_cell.length_b            79.137 
_cell.length_c            89.425 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UMY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,H,K,L,O,P,Q,R,S,U,W,X 1 1 
B,I,J,T 2 1,3 
D,M,N,V 2 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 -31.020329 0 83.872342 
3 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -31.020329 0 83.872342 
4 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 N N N 
? 3 O N N 
? 3 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A N ILE 26 A ILE 22 1_555 G O2N NAD . A NAD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? 
covale ? covale2 A NZ LYS 170 A LYS 166 1_555 G O2D NAD . A NAD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale3 C N ILE 26 C ILE 22 1_555 L O2N NAD . C NAD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale4 C NZ LYS 170 C LYS 166 1_555 L O2D NAD . C NAD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale5 D N ILE 26 D ILE 22 1_555 M O2N NAD . D NAD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
covale ? covale6 F N ILE 26 F ILE 22 1_555 R O2N NAD . F NAD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? 
#
_chem_comp.formula           'C23 H24 N4 O3' 
_chem_comp.formula_weight    404.462 
_chem_comp.id                NUC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-3-[(7S)-7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl]-N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]prop-2-enamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 N4 NUC sing 312 n n 
O1 C1 NUC doub 313 n n 
N4 C1 NUC sing 314 n n 
N4 C14 NUC sing 315 n n 
C1 C2 NUC sing 316 n n 
C17 C16 NUC sing 317 n n 
C2 C3 NUC doub 318 e n 
C14 C15 NUC sing 319 n n 
C3 C4 NUC sing 320 n n 
C16 C15 NUC doub 321 n y 
C16 C18 NUC sing 322 n y 
C15 O3 NUC sing 323 n y 
C18 C19 NUC doub 324 n y 
C18 C23 NUC sing 325 n y 
C5 C4 NUC doub 326 n y 
C5 N1 NUC sing 327 n y 
C19 C20 NUC sing 328 n y 
C4 C12 NUC sing 329 n y 
O3 C23 NUC sing 330 n y 
C23 C22 NUC doub 331 n y 
C20 C21 NUC doub 332 n y 
N1 C6 NUC doub 333 n y 
C22 C21 NUC sing 334 n y 
C12 C11 NUC doub 335 n y 
C6 C11 NUC sing 336 n y 
C6 N2 NUC sing 337 n n 
C11 C10 NUC sing 338 n n 
N2 C7 NUC sing 339 n n 
C10 C9 NUC sing 340 n n 
C8 C7 NUC sing 341 n n 
C8 C9 NUC sing 342 n n 
C8 N3 NUC sing 343 n n 
C7 O2 NUC doub 344 n n 
N3 H1 NUC sing 345 n n 
N3 H2 NUC sing 346 n n 
C2 H4 NUC sing 347 n n 
C5 H5 NUC sing 348 n n 
C10 H6 NUC sing 349 n n 
C10 H7 NUC sing 350 n n 
C12 H8 NUC sing 351 n n 
C13 H9 NUC sing 352 n n 
C13 H10 NUC sing 353 n n 
C13 H11 NUC sing 354 n n 
C14 H12 NUC sing 355 n n 
C14 H13 NUC sing 356 n n 
C17 H14 NUC sing 357 n n 
C17 H15 NUC sing 358 n n 
C17 H16 NUC sing 359 n n 
C19 H17 NUC sing 360 n n 
C20 H18 NUC sing 361 n n 
C21 H19 NUC sing 362 n n 
C22 H20 NUC sing 363 n n 
C3 H21 NUC sing 364 n n 
C8 H22 NUC sing 365 n n 
C9 H23 NUC sing 366 n n 
C9 H24 NUC sing 367 n n 
N2 H25 NUC sing 368 n n 
#
_atom_sites.entry_id                     7UMY 
_atom_sites.fract_transf_matrix[1][1]    0.003903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001444 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012636 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011923 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 NAD A 1 301 301 NAD NAD . 
H 3 NUC A 1 302 302 NUC BRD . 
I 3 NUC B 1 301 301 NUC BRD . 
J 2 NAD B 1 302 302 NAD NAD . 
K 3 NUC C 1 301 301 NUC BRD . 
L 2 NAD C 1 302 302 NAD NAD . 
M 2 NAD D 1 301 301 NAD NAD . 
N 3 NUC D 1 302 302 NUC BRD . 
O 3 NUC E 1 301 301 NUC BRD . 
P 2 NAD E 1 302 302 NAD NAD . 
Q 3 NUC F 1 301 301 NUC BRD . 
R 2 NAD F 1 302 302 NAD NAD . 
S 4 HOH A 1 401 5 HOH HOH . 
S 4 HOH A 2 402 14 HOH HOH . 
S 4 HOH A 3 403 21 HOH HOH . 
S 4 HOH A 4 404 11 HOH HOH . 
T 4 HOH B 1 401 27 HOH HOH . 
T 4 HOH B 2 402 7 HOH HOH . 
U 4 HOH C 1 401 13 HOH HOH . 
U 4 HOH C 2 402 18 HOH HOH . 
U 4 HOH C 3 403 9 HOH HOH . 
U 4 HOH C 4 404 36 HOH HOH . 
U 4 HOH C 5 405 12 HOH HOH . 
U 4 HOH C 6 406 32 HOH HOH . 
U 4 HOH C 7 407 24 HOH HOH . 
U 4 HOH C 8 408 15 HOH HOH . 
U 4 HOH C 9 409 22 HOH HOH . 
V 4 HOH D 1 401 17 HOH HOH . 
W 4 HOH E 1 401 33 HOH HOH . 
W 4 HOH E 2 402 31 HOH HOH . 
X 4 HOH F 1 401 26 HOH HOH . 
X 4 HOH F 2 402 4 HOH HOH . 
X 4 HOH F 3 403 16 HOH HOH . 
X 4 HOH F 4 404 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 NUC . . . K 3 57.52 -38.121 11.439 1 87.31 ? C4 NUC 301 C 1 
HETATM 2 N N3 NUC . . . K 3 62.761 -42.011 12.03 1 91.24 ? N3 NUC 301 C 1 
HETATM 3 C C2 NUC . . . K 3 55.608 -36.57 10.758 1 88.86 ? C2 NUC 301 C 1 
HETATM 4 N N1 NUC . . . K 3 59.119 -37.862 13.212 1 92.24 ? N1 NUC 301 C 1 
HETATM 5 C C7 NUC . . . K 3 61.836 -40.096 13.289 1 92.46 ? C7 NUC 301 C 1 
HETATM 6 C C6 NUC . . . K 3 59.66 -39.023 12.847 1 91.21 ? C6 NUC 301 C 1 
HETATM 7 O O2 NUC . . . K 3 62.584 -40.263 14.233 1 91.91 ? O2 NUC 301 C 1 
HETATM 8 C C5 NUC . . . K 3 58.072 -37.412 12.525 1 86.84 ? C5 NUC 301 C 1 
HETATM 9 C C1 NUC . . . K 3 54.487 -36.321 9.858 1 86.55 ? C1 NUC 301 C 1 
HETATM 10 C C10 NUC . . . K 3 59.843 -41.126 11.42 1 87.08 ? C10 NUC 301 C 1 
HETATM 11 C C11 NUC . . . K 3 59.198 -39.807 11.79 1 86.94 ? C11 NUC 301 C 1 
HETATM 12 C C12 NUC . . . K 3 58.109 -39.34 11.081 1 86.43 ? C12 NUC 301 C 1 
HETATM 13 C C13 NUC . . . K 3 55.069 -37.782 7.912 1 99 ? C13 NUC 301 C 1 
HETATM 14 C C14 NUC . . . K 3 52.748 -37.875 8.978 1 85.84 ? C14 NUC 301 C 1 
HETATM 15 C C15 NUC . . . K 3 52.604 -38.719 10.23 1 84.11 ? C15 NUC 301 C 1 
HETATM 16 C C16 NUC . . . K 3 51.548 -39.446 10.653 1 82.98 ? C16 NUC 301 C 1 
HETATM 17 C C17 NUC . . . K 3 50.215 -39.581 9.963 1 81.54 ? C17 NUC 301 C 1 
HETATM 18 C C18 NUC . . . K 3 51.908 -40.052 11.872 1 83.97 ? C18 NUC 301 C 1 
HETATM 19 C C19 NUC . . . K 3 51.252 -40.9 12.776 1 86.8 ? C19 NUC 301 C 1 
HETATM 20 C C20 NUC . . . K 3 51.93 -41.32 13.915 1 85.87 ? C20 NUC 301 C 1 
HETATM 21 C C21 NUC . . . K 3 53.252 -40.895 14.158 1 91.1 ? C21 NUC 301 C 1 
HETATM 22 C C22 NUC . . . K 3 53.905 -40.059 13.261 1 88.8 ? C22 NUC 301 C 1 
HETATM 23 C C23 NUC . . . K 3 53.208 -39.652 12.126 1 83.9 ? C23 NUC 301 C 1 
HETATM 24 C C3 NUC . . . K 3 56.376 -37.693 10.644 1 91.12 ? C3 NUC 301 C 1 
HETATM 25 C C8 NUC . . . K 3 62.23 -40.624 11.883 1 92.26 ? C8 NUC 301 C 1 
HETATM 26 C C9 NUC . . . K 3 61.191 -40.844 10.77 1 91.11 ? C9 NUC 301 C 1 
HETATM 27 N N2 NUC . . . K 3 60.726 -39.398 13.617 1 93.19 ? N2 NUC 301 C 1 
HETATM 28 N N4 NUC . . . K 3 54.117 -37.282 8.926 1 87.63 ? N4 NUC 301 C 1 
HETATM 29 O O1 NUC . . . K 3 53.839 -35.276 9.881 1 84.26 ? O1 NUC 301 C 1 
HETATM 30 O O3 NUC . . . K 3 53.646 -38.831 11.119 1 82.84 ? O3 NUC 301 C 1 
HETATM 31 H H1 NUC . . . K 3 62.776 -42.25 13.011 1 110.89 ? H1 NUC 301 C 1 
HETATM 32 H H2 NUC . . . K 3 62.068 -42.656 11.652 1 110.89 ? H2 NUC 301 C 1 
HETATM 33 H H4 NUC . . . K 3 55.796 -35.844 11.499 1 108.04 ? H4 NUC 301 C 1 
HETATM 34 H H5 NUC . . . K 3 57.658 -36.486 12.824 1 105.62 ? H5 NUC 301 C 1 
HETATM 35 H H6 NUC . . . K 3 59.213 -41.679 10.722 1 105.9 ? H6 NUC 301 C 1 
HETATM 36 H H7 NUC . . . K 3 59.991 -41.743 12.308 1 105.9 ? H7 NUC 301 C 1 
HETATM 37 H H8 NUC . . . K 3 57.714 -39.894 10.269 1 105.12 ? H8 NUC 301 C 1 
HETATM 38 H H9 NUC . . . K 3 55.918 -37.11 7.882 1 120.21 ? H9 NUC 301 C 1 
HETATM 39 H H10 NUC . . . K 3 54.567 -37.803 6.954 1 120.21 ? H10 NUC 301 C 1 
HETATM 40 H H11 NUC . . . K 3 55.382 -38.777 8.2 1 120.21 ? H11 NUC 301 C 1 
HETATM 41 H H12 NUC . . . K 3 52.003 -37.092 9.031 1 104.42 ? H12 NUC 301 C 1 
HETATM 42 H H13 NUC . . . K 3 52.592 -38.53 8.13 1 104.42 ? H13 NUC 301 C 1 
HETATM 43 H H14 NUC . . . K 3 49.47 -39.833 10.718 1 99.25 ? H14 NUC 301 C 1 
HETATM 44 H H15 NUC . . . K 3 50.3 -40.374 9.22 1 99.25 ? H15 NUC 301 C 1 
HETATM 45 H H16 NUC . . . K 3 49.983 -38.627 9.489 1 99.25 ? H16 NUC 301 C 1 
HETATM 46 H H17 NUC . . . K 3 50.257 -41.213 12.591 1 105.57 ? H17 NUC 301 C 1 
HETATM 47 H H18 NUC . . . K 3 51.453 -41.964 14.608 1 104.45 ? H18 NUC 301 C 1 
HETATM 48 H H19 NUC . . . K 3 53.75 -41.219 15.035 1 110.72 ? H19 NUC 301 C 1 
HETATM 49 H H20 NUC . . . K 3 54.9 -39.736 13.424 1 107.96 ? H20 NUC 301 C 1 
HETATM 50 H H21 NUC . . . K 3 56.119 -38.369 9.867 1 110.75 ? H21 NUC 301 C 1 
HETATM 51 H H22 NUC . . . K 3 62.92 -39.871 11.523 1 112.12 ? H22 NUC 301 C 1 
HETATM 52 H H23 NUC . . . K 3 61.128 -39.952 10.144 1 110.74 ? H23 NUC 301 C 1 
HETATM 53 H H24 NUC . . . K 3 61.492 -41.687 10.146 1 110.74 ? H24 NUC 301 C 1 
HETATM 54 H H25 NUC . . . K 3 60.677 -39.104 14.599 1 113.24 ? H25 NUC 301 C 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           54 
#