data_7UNF # _model_server_result.job_id zU4o72dkCLgid9ff_a00sw _model_server_result.datetime_utc '2024-10-26 14:22:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7unf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":501}' # _entry.id 7UNF # _exptl.entry_id 7UNF _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 KA N N ? 21 LA N N ? 21 MA N N ? 21 NA N N ? 21 OA N N ? 21 PA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 18 oligosaccharide 19 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 18 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 18 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 18 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 18 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 18 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 18 7 6 GLC MAN C1 O1 . O3 HO3 . sing 7 ? 18 8 7 GLC GLC C1 O1 . O3 HO3 . sing 8 ? 19 2 1 MAN MAN C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 18 n HA NAG 1 t 1 NAG t 1 NAG 18 n HA NAG 2 t 2 NAG t 2 NAG 18 n HA BMA 3 t 3 BMA t 3 BMA 18 n HA MAN 4 t 4 MAN t 4 MAN 18 n HA MAN 5 t 5 MAN t 5 MAN 18 n HA MAN 6 t 6 MAN t 6 MAN 18 n HA GLC 7 t 7 GLC t 7 GLC 18 n HA GLC 8 t 8 GLC t 8 GLC 19 n IA MAN 1 w 1 MAN w 1 MAN 19 n IA MAN 2 w 2 MAN w 2 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 V SG CYS 371 s CYS 371 1_555 V SG CYS 418 s CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? covale ? covale1 V ND2 ASN 261 s ASN 261 1_555 PA C1 NAG . s NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.577 ? covale ? covale2 V ND2 ASN 273 s ASN 273 1_555 KA C1 NAG . s NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 V ND2 ASN 296 s ASN 296 1_555 LA C1 NAG . s NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale4 V ND2 ASN 303 s ASN 303 1_555 MA C1 NAG . s NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale5 V ND2 ASN 357 s ASN 357 1_555 OA C1 NAG . s NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.541 ? covale ? covale6 HA O4 NAG . t NAG 1 1_555 HA C1 NAG . t NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 HA O4 NAG . t NAG 2 1_555 HA C1 BMA . t BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 HA O3 BMA . t BMA 3 1_555 HA C1 MAN . t MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 HA O2 MAN . t MAN 4 1_555 HA C1 MAN . t MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 HA O2 MAN . t MAN 5 1_555 HA C1 MAN . t MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale11 HA O3 MAN . t MAN 6 1_555 HA C1 GLC . t GLC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale12 HA O3 GLC . t GLC 7 1_555 HA C1 GLC . t GLC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 IA O6 MAN . w MAN 1 1_555 IA C1 MAN . w MAN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7UNF _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code JA 20 ADP M 1 701 701 ADP ADP . KA 21 NAG s 1 501 503 NAG NAG . LA 21 NAG s 1 502 504 NAG NAG . MA 21 NAG s 1 503 505 NAG NAG . NA 21 NAG s 1 504 506 NAG NAG . OA 21 NAG s 1 505 507 NAG NAG . PA 21 NAG s 1 506 509 NAG NAG . QA 22 POV s 1 507 399 POV POV . RA 22 POV s 1 508 601 POV POV . SA 22 POV r 1 401 401 POV POV . TA 22 POV r 1 402 501 POV POV . UA 22 POV r 1 403 702 POV POV . VA 22 POV 8 1 201 499 POV POV . WA 22 POV 1 1 301 301 POV POV . XA 22 POV 1 1 302 500 POV POV . YA 22 POV 1 1 303 701 POV POV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . KA 21 303.682 159.012 129.031 1 52.51 ? C1 NAG 501 s 1 HETATM 2 C C2 NAG . . . KA 21 303.555 157.768 128.14 1 52.51 ? C2 NAG 501 s 1 HETATM 3 C C3 NAG . . . KA 21 304.215 156.567 128.815 1 52.51 ? C3 NAG 501 s 1 HETATM 4 C C4 NAG . . . KA 21 305.648 156.888 129.224 1 52.51 ? C4 NAG 501 s 1 HETATM 5 C C5 NAG . . . KA 21 305.685 158.152 130.078 1 52.51 ? C5 NAG 501 s 1 HETATM 6 C C6 NAG . . . KA 21 307.086 158.612 130.397 1 52.51 ? C6 NAG 501 s 1 HETATM 7 C C7 NAG . . . KA 21 301.754 156.992 126.67 1 52.51 ? C7 NAG 501 s 1 HETATM 8 C C8 NAG . . . KA 21 300.282 156.755 126.534 1 52.51 ? C8 NAG 501 s 1 HETATM 9 N N2 NAG . . . KA 21 302.163 157.48 127.844 1 52.51 ? N2 NAG 501 s 1 HETATM 10 O O3 NAG . . . KA 21 304.206 155.462 127.92 1 52.51 ? O3 NAG 501 s 1 HETATM 11 O O4 NAG . . . KA 21 306.198 155.808 129.969 1 52.51 ? O4 NAG 501 s 1 HETATM 12 O O5 NAG . . . KA 21 305.065 159.231 129.366 1 52.51 ? O5 NAG 501 s 1 HETATM 13 O O6 NAG . . . KA 21 307.341 159.892 129.833 1 52.51 ? O6 NAG 501 s 1 HETATM 14 O O7 NAG . . . KA 21 302.538 156.754 125.759 1 52.51 ? O7 NAG 501 s 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 93 _model_server_stats.query_time_ms 618 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #