data_7UP4 # _model_server_result.job_id 1fFeWN_5WHphO85D2kWU7A _model_server_result.datetime_utc '2024-11-16 18:27:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7up4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 7UP4 # _exptl.entry_id 7UP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.086 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5M)-5-(2,5-dichloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UP4 _cell.length_a 51.44 _cell.length_b 91.18 _cell.length_c 136.17 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 199 A CYS 630 1_555 A SG CYS 282 A CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 199 B CYS 630 1_555 B SG CYS 282 B CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A SG CYS 28 A CYS 440 1_555 C C14 O1K . A O1K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? covale ? covale2 B SG CYS 28 B CYS 440 1_555 D C14 O1K . B O1K 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.788 ? # _chem_comp.formula 'C10 H5 Cl2 N5' _chem_comp.formula_weight 266.086 _chem_comp.id O1K _chem_comp.mon_nstd_flag . _chem_comp.name (5M)-5-(2,5-dichloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL17 C11 O1K sing 237 n n C12 C11 O1K doub 238 n y C12 N13 O1K sing 239 n y N01 C02 O1K doub 240 n y N01 C06 O1K sing 241 n y C11 C10 O1K sing 242 n y C02 C03 O1K sing 243 n y N13 C14 O1K doub 244 n y C06 N05 O1K doub 245 n y C10 N09 O1K sing 246 n n C10 N15 O1K doub 247 n y C03 N09 O1K sing 248 n y C03 C04 O1K doub 249 n y C14 N15 O1K sing 250 n y N09 C08 O1K sing 251 n y N05 C04 O1K sing 252 n y C04 C07 O1K sing 253 n y C08 C07 O1K doub 254 n y C02 H1 O1K sing 255 n n C06 H2 O1K sing 256 n n C07 H3 O1K sing 257 n n C08 H4 O1K sing 258 n n C12 H5 O1K sing 259 n n C14 CL1 O1K sing 260 n n # _atom_sites.entry_id 7UP4 _atom_sites.fract_transf_matrix[1][1] 0.01944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010967 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007344 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O1K A 1 900 900 O1K 334 . D 2 O1K B 1 900 900 O1K 334 . E 3 HOH A 1 1001 1 HOH HOH . E 3 HOH A 2 1002 2 HOH HOH . F 3 HOH B 1 1001 5 HOH HOH . F 3 HOH B 2 1002 4 HOH HOH . F 3 HOH B 3 1003 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 O1K . . . D 2 9.087 55.057 49.716 1 37.22 ? C02 O1K 900 B 1 HETATM 2 C C03 O1K . . . D 2 9.345 55.06 48.338 1 39.23 ? C03 O1K 900 B 1 HETATM 3 C C04 O1K . . . D 2 10.073 53.986 47.748 1 42.4 ? C04 O1K 900 B 1 HETATM 4 C C06 O1K . . . D 2 10.221 53.061 49.827 1 48.5 ? C06 O1K 900 B 1 HETATM 5 C C07 O1K . . . D 2 10.183 54.248 46.346 1 37.17 ? C07 O1K 900 B 1 HETATM 6 C C08 O1K . . . D 2 9.53 55.449 46.138 1 37.38 ? C08 O1K 900 B 1 HETATM 7 C C10 O1K . . . D 2 8.271 57.119 47.546 1 40.38 ? C10 O1K 900 B 1 HETATM 8 C C11 O1K . . . D 2 8.588 58.172 48.424 1 40.57 ? C11 O1K 900 B 1 HETATM 9 C C12 O1K . . . D 2 7.661 59.216 48.503 1 41.06 ? C12 O1K 900 B 1 HETATM 10 C C14 O1K . . . D 2 6.275 58.165 46.989 1 37.74 ? C14 O1K 900 B 1 HETATM 11 N N01 O1K . . . D 2 9.534 54.035 50.479 1 42.01 ? N01 O1K 900 B 1 HETATM 12 N N05 O1K . . . D 2 10.52 52.973 48.497 1 46.27 ? N05 O1K 900 B 1 HETATM 13 N N09 O1K . . . D 2 9.037 55.954 47.333 1 40.98 ? N09 O1K 900 B 1 HETATM 14 N N13 O1K . . . D 2 6.499 59.226 47.798 1 37.98 ? N13 O1K 900 B 1 HETATM 15 N N15 O1K . . . D 2 7.107 57.109 46.85 1 40.52 ? N15 O1K 900 B 1 HETATM 16 CL CL17 O1K . . . D 2 10.032 58.255 49.366 1 48.76 ? CL17 O1K 900 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #