data_7UP5 # _model_server_result.job_id DMkHSxedlvgF9hzqejsVUw _model_server_result.datetime_utc '2024-11-16 20:38:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7up5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 7UP5 # _exptl.entry_id 7UP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 255.663 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2M)-6-chloro-2-(5H-pyrrolo[3,2-d]pyrimidin-5-yl)pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UP5 _cell.length_a 51.48 _cell.length_b 90.78 _cell.length_c 135.97 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 28 A CYS 440 1_555 C C02 O1R . A O1R 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale2 B SG CYS 28 B CYS 440 1_555 F C02 O1R . B O1R 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? # _chem_comp.formula 'C12 H6 Cl N5' _chem_comp.formula_weight 255.663 _chem_comp.id O1R _chem_comp.mon_nstd_flag . _chem_comp.name (2M)-6-chloro-2-(5H-pyrrolo[3,2-d]pyrimidin-5-yl)pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N16 C17 O1R doub 237 n y N16 C15 O1R sing 238 n y C17 C18 O1R sing 239 n y C15 N14 O1R doub 240 n y C02 N09 O1R doub 241 n y C02 C03 O1R sing 242 n y N09 C08 O1R sing 243 n y C03 C04 O1R doub 244 n y C18 C13 O1R doub 245 n y C18 N10 O1R sing 246 n y N14 C13 O1R sing 247 n y C13 C12 O1R sing 248 n y C08 N10 O1R sing 249 n n C08 C05 O1R doub 250 n y C04 C05 O1R sing 251 n y N10 C11 O1R sing 252 n y C05 C06 O1R sing 253 n n C06 N07 O1R trip 254 n n C12 C11 O1R doub 255 n y C03 H2 O1R sing 256 n n C04 H3 O1R sing 257 n n C11 H4 O1R sing 258 n n C12 H5 O1R sing 259 n n C15 H6 O1R sing 260 n n C17 H7 O1R sing 261 n n C02 CL1 O1R sing 262 n n # _atom_sites.entry_id 7UP5 _atom_sites.fract_transf_matrix[1][1] 0.019425 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011016 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O1R A 1 901 901 O1R 414 . D 3 IOD A 1 902 1 IOD IOD . E 3 IOD A 1 903 3 IOD IOD . F 2 O1R B 1 901 901 O1R 414 . G 3 IOD B 1 902 2 IOD IOD . H 4 HOH A 1 1001 3 HOH HOH . H 4 HOH A 2 1002 15 HOH HOH . H 4 HOH A 3 1003 17 HOH HOH . H 4 HOH A 4 1004 20 HOH HOH . H 4 HOH A 5 1005 18 HOH HOH . H 4 HOH A 6 1006 28 HOH HOH . H 4 HOH A 7 1007 27 HOH HOH . H 4 HOH A 8 1008 2 HOH HOH . H 4 HOH A 9 1009 29 HOH HOH . H 4 HOH A 10 1010 5 HOH HOH . H 4 HOH A 11 1011 6 HOH HOH . H 4 HOH A 12 1012 25 HOH HOH . H 4 HOH A 13 1013 26 HOH HOH . H 4 HOH A 14 1014 38 HOH HOH . H 4 HOH A 15 1015 1 HOH HOH . H 4 HOH A 16 1016 4 HOH HOH . H 4 HOH A 17 1017 30 HOH HOH . H 4 HOH A 18 1018 23 HOH HOH . H 4 HOH A 19 1019 16 HOH HOH . H 4 HOH A 20 1020 24 HOH HOH . I 4 HOH B 1 1001 10 HOH HOH . I 4 HOH B 2 1002 13 HOH HOH . I 4 HOH B 3 1003 36 HOH HOH . I 4 HOH B 4 1004 7 HOH HOH . I 4 HOH B 5 1005 9 HOH HOH . I 4 HOH B 6 1006 11 HOH HOH . I 4 HOH B 7 1007 12 HOH HOH . I 4 HOH B 8 1008 35 HOH HOH . I 4 HOH B 9 1009 8 HOH HOH . I 4 HOH B 10 1010 32 HOH HOH . I 4 HOH B 11 1011 19 HOH HOH . I 4 HOH B 12 1012 22 HOH HOH . I 4 HOH B 13 1013 31 HOH HOH . I 4 HOH B 14 1014 33 HOH HOH . I 4 HOH B 15 1015 14 HOH HOH . I 4 HOH B 16 1016 21 HOH HOH . I 4 HOH B 17 1017 34 HOH HOH . I 4 HOH B 18 1018 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 O1R . . . C 2 22.288 38.487 81.351 1 46.23 ? C02 O1R 901 A 1 HETATM 2 C C03 O1R . . . C 2 22.464 37.169 81.7 1 51.41 ? C03 O1R 901 A 1 HETATM 3 C C04 O1R . . . C 2 23.605 36.892 82.418 1 50.11 ? C04 O1R 901 A 1 HETATM 4 C C05 O1R . . . C 2 24.512 37.896 82.757 1 41.63 ? C05 O1R 901 A 1 HETATM 5 C C06 O1R . . . C 2 25.653 37.495 83.5 1 31.28 ? C06 O1R 901 A 1 HETATM 6 C C08 O1R . . . C 2 24.226 39.208 82.34 1 39.65 ? C08 O1R 901 A 1 HETATM 7 C C11 O1R . . . C 2 25.773 40.631 83.715 1 52.47 ? C11 O1R 901 A 1 HETATM 8 C C12 O1R . . . C 2 26.363 41.821 83.586 1 52.56 ? C12 O1R 901 A 1 HETATM 9 C C13 O1R . . . C 2 25.961 42.364 82.312 1 43.44 ? C13 O1R 901 A 1 HETATM 10 C C15 O1R . . . C 2 25.762 43.758 80.551 1 52.4 ? C15 O1R 901 A 1 HETATM 11 C C17 O1R . . . C 2 24.607 41.767 80.45 1 32.65 ? C17 O1R 901 A 1 HETATM 12 C C18 O1R . . . C 2 25.111 41.437 81.7 1 34.37 ? C18 O1R 901 A 1 HETATM 13 N N07 O1R . . . C 2 26.569 37.175 84.096 1 30.54 ? N07 O1R 901 A 1 HETATM 14 N N09 O1R . . . C 2 23.114 39.432 81.654 1 48.78 ? N09 O1R 901 A 1 HETATM 15 N N10 O1R . . . C 2 24.987 40.335 82.576 1 43.2 ? N10 O1R 901 A 1 HETATM 16 N N14 O1R . . . C 2 26.286 43.517 81.742 1 47.6 ? N14 O1R 901 A 1 HETATM 17 N N16 O1R . . . C 2 24.946 42.928 79.899 1 47.18 ? N16 O1R 901 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #