data_7UP8 # _model_server_result.job_id cR31-wn4YZcsZMVXRFI0PA _model_server_result.datetime_utc '2024-11-16 20:49:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7up8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":900}' # _entry.id 7UP8 # _exptl.entry_id 7UP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 310.537 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5M)-5-(5-bromo-2-chloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UP8 _cell.length_a 51.52 _cell.length_b 90.91 _cell.length_c 136.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 199 A CYS 630 1_555 A SG CYS 282 A CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 B SG CYS 199 B CYS 630 1_555 B SG CYS 282 B CYS 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? covale ? covale1 A SG CYS 28 A CYS 440 1_555 C C14 O10 . A O10 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? covale ? covale2 B SG CYS 28 B CYS 440 1_555 D C14 O10 . B O10 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? # _chem_comp.formula 'C10 H5 Br Cl N5' _chem_comp.formula_weight 310.537 _chem_comp.id O10 _chem_comp.mon_nstd_flag . _chem_comp.name (5M)-5-(5-bromo-2-chloropyrimidin-4-yl)-5H-pyrrolo[3,2-d]pyrimidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BR17 C11 O10 sing 237 n n C12 C11 O10 doub 238 n y C12 N13 O10 sing 239 n y C11 C10 O10 sing 240 n y N13 C14 O10 doub 241 n y C02 N01 O10 doub 242 n y C02 C03 O10 sing 243 n y N01 C06 O10 sing 244 n y C10 N15 O10 doub 245 n y C10 N09 O10 sing 246 n n C14 N15 O10 sing 247 n y C06 N05 O10 doub 248 n y C03 N09 O10 sing 249 n y C03 C04 O10 doub 250 n y N09 C08 O10 sing 251 n y N05 C04 O10 sing 252 n y C04 C07 O10 sing 253 n y C08 C07 O10 doub 254 n y C02 H1 O10 sing 255 n n C06 H2 O10 sing 256 n n C07 H3 O10 sing 257 n n C08 H4 O10 sing 258 n n C12 H5 O10 sing 259 n n C14 CL1 O10 sing 260 n n # _atom_sites.entry_id 7UP8 _atom_sites.fract_transf_matrix[1][1] 0.01941 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 O10 A 1 900 900 O10 266 . D 2 O10 B 1 900 900 O10 266 . E 3 HOH A 1 1001 1 HOH HOH . F 3 HOH B 1 1001 3 HOH HOH . F 3 HOH B 2 1002 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 O10 . . . D 2 9.071 54.358 49.222 1 52.45 ? C02 O10 900 B 1 HETATM 2 C C03 O10 . . . D 2 9.136 54.702 47.89 1 47.82 ? C03 O10 900 B 1 HETATM 3 C C04 O10 . . . D 2 9.786 53.832 47.006 1 48.61 ? C04 O10 900 B 1 HETATM 4 C C06 O10 . . . D 2 10.226 52.441 48.72 1 56.56 ? C06 O10 900 B 1 HETATM 5 C C07 O10 . . . D 2 9.722 54.409 45.686 1 42.68 ? C07 O10 900 B 1 HETATM 6 C C08 O10 . . . D 2 9.059 55.567 45.807 1 50.97 ? C08 O10 900 B 1 HETATM 7 C C10 O10 . . . D 2 7.975 56.901 47.555 1 50.55 ? C10 O10 900 B 1 HETATM 8 C C11 O10 . . . D 2 8.324 57.802 48.552 1 55.43 ? C11 O10 900 B 1 HETATM 9 C C12 O10 . . . D 2 7.451 58.845 48.783 1 56.97 ? C12 O10 900 B 1 HETATM 10 C C14 O10 . . . D 2 6.078 58.093 47.181 1 53.06 ? C14 O10 900 B 1 HETATM 11 N N01 O10 . . . D 2 9.623 53.223 49.621 1 59.67 ? N01 O10 900 B 1 HETATM 12 N N05 O10 . . . D 2 10.331 52.699 47.426 1 54.29 ? N05 O10 900 B 1 HETATM 13 N N09 O10 . . . D 2 8.687 55.785 47.149 1 49.22 ? N09 O10 900 B 1 HETATM 14 N N13 O10 . . . D 2 6.322 59 48.093 1 51.7 ? N13 O10 900 B 1 HETATM 15 N N15 O10 . . . D 2 6.843 57.082 46.887 1 54.78 ? N15 O10 900 B 1 HETATM 16 BR BR17 O10 . . . D 2 9.905 57.694 49.606 1 116.86 ? BR17 O10 900 B 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #