data_7UPI # _model_server_result.job_id r3kbq-9NOYhB4KLbC0tpkQ _model_server_result.datetime_utc '2024-10-10 11:19:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7upi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7UPI # _exptl.entry_id 7UPI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UPI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UPI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 28 A SER 27 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A OG1 THR 46 A THR 45 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc3 D O2G GTP . A GTP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc4 D O2B GTP . A GTP 201 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc5 B OD2 ASP 65 B ASP 64 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 B NE2 HIS 67 B HIS 66 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc7 B OD2 ASP 93 B ASP 92 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc8 B OD2 ASP 93 B ASP 92 1_555 G MN MN . B MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 B OD1 ASN 125 B ASN 124 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? metalc ? metalc10 B NE2 HIS 174 B HIS 173 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc11 B ND1 HIS 249 B HIS 248 1_555 F MN MN . B MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 7UPI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 201 179 GTP GTP . E 5 MG A 1 202 180 MG MG . F 6 MN B 1 401 301 MN MN . G 6 MN B 1 402 302 MN MN . H 7 CL B 1 403 303 CL CL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 142.09 128.03 150.59 1 42.6 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . D 4 141.875 126.861 149.663 1 46.97 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . D 4 143.142 128.983 150.087 1 47.94 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . D 4 142.325 127.609 152.017 1 37.88 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . D 4 140.706 128.861 150.588 1 38.28 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . D 4 140.169 130.073 151.484 1 41.77 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . D 4 139.981 129.588 152.882 1 45.85 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . D 4 141.029 131.265 151.228 1 45.14 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . D 4 138.736 130.335 150.82 1 35.71 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . D 4 138.307 131.03 149.44 1 40.39 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . D 4 138.608 132.489 149.525 1 51.72 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . D 4 138.899 130.255 148.31 1 45.83 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . D 4 136.719 130.815 149.455 1 35.21 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . D 4 136.2 129.463 149.493 1 36.39 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . D 4 134.703 129.498 149.309 1 38.39 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . D 4 134.128 130.318 150.36 1 47.7 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . D 4 134.193 130.103 147.991 1 33.33 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . D 4 133.061 129.375 147.535 1 47.65 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . D 4 133.752 131.503 148.426 1 37.25 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . D 4 132.836 132.12 147.547 1 44.93 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . D 4 133.168 131.175 149.793 1 40.81 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . D 4 133.023 132.334 150.665 1 40.85 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . D 4 134.033 133 151.312 1 38.7 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . D 4 133.608 134.006 152.037 1 48.23 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . D 4 132.23 133.996 151.862 1 37.79 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . D 4 131.238 134.849 152.405 1 34.67 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . D 4 131.39 135.81 153.172 1 38.14 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . D 4 129.962 134.486 151.972 1 39.52 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . D 4 129.679 133.442 151.126 1 41.5 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . D 4 128.389 133.25 150.822 1 38.39 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . D 4 130.608 132.637 150.612 1 41.5 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . D 4 131.856 132.97 151.021 1 41.57 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #