data_7URB # _model_server_result.job_id ri7ctVzvzyEvH0lWalO-GA _model_server_result.datetime_utc '2024-11-21 09:03:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7URB # _exptl.entry_id 7URB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.645 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2P)-2-(isoquinolin-4-yl)-1-[(1s,3R)-3-(methylcarbamoyl)cyclobutyl]-N-{(1S)-1-[4-(trifluoromethyl)phenyl]butyl}-1H-benzimidazole-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.86 _cell.angle_gamma 90 _cell.entry_id 7URB _cell.length_a 96.21 _cell.length_b 82.23 _cell.length_c 54.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H32 F3 N5 O2' _chem_comp.formula_weight 599.645 _chem_comp.id O5O _chem_comp.mon_nstd_flag . _chem_comp.name (2P)-2-(isoquinolin-4-yl)-1-[(1s,3R)-3-(methylcarbamoyl)cyclobutyl]-N-{(1S)-1-[4-(trifluoromethyl)phenyl]butyl}-1H-benzimidazole-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 C22 O5O sing 237 n n C22 C21 O5O sing 238 n n C21 C20 O5O sing 239 n n C20 C24 O5O sing 240 n n C20 N4 O5O sing 241 n n C30 C24 O5O doub 242 n y C30 C29 O5O sing 243 n y O1 C19 O5O doub 244 n n C24 C25 O5O sing 245 n y N4 C19 O5O sing 246 n n C29 C27 O5O doub 247 n y C19 C18 O5O sing 248 n n C31 C18 O5O doub 249 n y C31 C32 O5O sing 250 n y C10 C9 O5O doub 251 n y C10 C11 O5O sing 252 n y C18 C17 O5O sing 253 n y C25 C26 O5O doub 254 n y C32 C33 O5O doub 255 n y C27 C26 O5O sing 256 n y C27 C28 O5O sing 257 n n F C28 O5O sing 258 n n C9 C8 O5O sing 259 n y C11 C12 O5O doub 260 n y C17 N1 O5O sing 261 n y C17 C16 O5O doub 262 n y C5 C2 O5O sing 263 n n C5 C O5O sing 264 n n N C4 O5O sing 265 n n N C3 O5O sing 266 n n C2 C3 O5O sing 267 n n C2 C1 O5O sing 268 n n C33 C16 O5O sing 269 n y C28 F2 O5O sing 270 n n C28 F1 O5O sing 271 n n C N1 O5O sing 272 n n C C1 O5O sing 273 n n N1 C6 O5O sing 274 n y C16 N3 O5O sing 275 n y C3 O O5O doub 276 n n C8 C7 O5O doub 277 n y C8 C13 O5O sing 278 n y C6 N3 O5O doub 279 n y C6 C7 O5O sing 280 n n C12 C13 O5O sing 281 n y C7 C15 O5O sing 282 n y C13 C14 O5O doub 283 n y C15 N2 O5O doub 284 n y C14 N2 O5O sing 285 n y C9 H1 O5O sing 286 n n C1 H2 O5O sing 287 n n C1 H3 O5O sing 288 n n C5 H4 O5O sing 289 n n C5 H5 O5O sing 290 n n C4 H6 O5O sing 291 n n C4 H7 O5O sing 292 n n C4 H8 O5O sing 293 n n C2 H9 O5O sing 294 n n N4 H10 O5O sing 295 n n N H11 O5O sing 296 n n C H12 O5O sing 297 n n C10 H13 O5O sing 298 n n C11 H14 O5O sing 299 n n C12 H15 O5O sing 300 n n C14 H16 O5O sing 301 n n C15 H17 O5O sing 302 n n C20 H18 O5O sing 303 n n C21 H19 O5O sing 304 n n C21 H20 O5O sing 305 n n C22 H21 O5O sing 306 n n C22 H22 O5O sing 307 n n C23 H23 O5O sing 308 n n C23 H24 O5O sing 309 n n C23 H25 O5O sing 310 n n C25 H26 O5O sing 311 n n C26 H27 O5O sing 312 n n C29 H28 O5O sing 313 n n C30 H29 O5O sing 314 n n C31 H30 O5O sing 315 n n C32 H31 O5O sing 316 n n C33 H32 O5O sing 317 n n # _atom_sites.entry_id 7URB _atom_sites.fract_transf_matrix[1][1] 0.010394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005264 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O5O B 1 401 1 O5O LIG . C 3 HOH B 1 501 41 HOH HOH . C 3 HOH B 2 502 44 HOH HOH . C 3 HOH B 3 503 86 HOH HOH . C 3 HOH B 4 504 186 HOH HOH . C 3 HOH B 5 505 113 HOH HOH . C 3 HOH B 6 506 34 HOH HOH . C 3 HOH B 7 507 141 HOH HOH . C 3 HOH B 8 508 213 HOH HOH . C 3 HOH B 9 509 102 HOH HOH . C 3 HOH B 10 510 75 HOH HOH . C 3 HOH B 11 511 142 HOH HOH . C 3 HOH B 12 512 31 HOH HOH . C 3 HOH B 13 513 226 HOH HOH . C 3 HOH B 14 514 96 HOH HOH . C 3 HOH B 15 515 209 HOH HOH . C 3 HOH B 16 516 26 HOH HOH . C 3 HOH B 17 517 87 HOH HOH . C 3 HOH B 18 518 6 HOH HOH . C 3 HOH B 19 519 8 HOH HOH . C 3 HOH B 20 520 148 HOH HOH . C 3 HOH B 21 521 72 HOH HOH . C 3 HOH B 22 522 81 HOH HOH . C 3 HOH B 23 523 16 HOH HOH . C 3 HOH B 24 524 117 HOH HOH . C 3 HOH B 25 525 79 HOH HOH . C 3 HOH B 26 526 228 HOH HOH . C 3 HOH B 27 527 172 HOH HOH . C 3 HOH B 28 528 14 HOH HOH . C 3 HOH B 29 529 18 HOH HOH . C 3 HOH B 30 530 20 HOH HOH . C 3 HOH B 31 531 105 HOH HOH . C 3 HOH B 32 532 201 HOH HOH . C 3 HOH B 33 533 64 HOH HOH . C 3 HOH B 34 534 174 HOH HOH . C 3 HOH B 35 535 35 HOH HOH . C 3 HOH B 36 536 108 HOH HOH . C 3 HOH B 37 537 139 HOH HOH . C 3 HOH B 38 538 161 HOH HOH . C 3 HOH B 39 539 88 HOH HOH . C 3 HOH B 40 540 13 HOH HOH . C 3 HOH B 41 541 4 HOH HOH . C 3 HOH B 42 542 184 HOH HOH . C 3 HOH B 43 543 136 HOH HOH . C 3 HOH B 44 544 74 HOH HOH . C 3 HOH B 45 545 73 HOH HOH . C 3 HOH B 46 546 25 HOH HOH . C 3 HOH B 47 547 126 HOH HOH . C 3 HOH B 48 548 1 HOH HOH . C 3 HOH B 49 549 2 HOH HOH . C 3 HOH B 50 550 51 HOH HOH . C 3 HOH B 51 551 147 HOH HOH . C 3 HOH B 52 552 59 HOH HOH . C 3 HOH B 53 553 99 HOH HOH . C 3 HOH B 54 554 236 HOH HOH . C 3 HOH B 55 555 144 HOH HOH . C 3 HOH B 56 556 54 HOH HOH . C 3 HOH B 57 557 90 HOH HOH . C 3 HOH B 58 558 100 HOH HOH . C 3 HOH B 59 559 152 HOH HOH . C 3 HOH B 60 560 68 HOH HOH . C 3 HOH B 61 561 227 HOH HOH . C 3 HOH B 62 562 127 HOH HOH . C 3 HOH B 63 563 10 HOH HOH . C 3 HOH B 64 564 202 HOH HOH . C 3 HOH B 65 565 12 HOH HOH . C 3 HOH B 66 566 42 HOH HOH . C 3 HOH B 67 567 27 HOH HOH . C 3 HOH B 68 568 80 HOH HOH . C 3 HOH B 69 569 23 HOH HOH . C 3 HOH B 70 570 77 HOH HOH . C 3 HOH B 71 571 166 HOH HOH . C 3 HOH B 72 572 61 HOH HOH . C 3 HOH B 73 573 109 HOH HOH . C 3 HOH B 74 574 56 HOH HOH . C 3 HOH B 75 575 150 HOH HOH . C 3 HOH B 76 576 9 HOH HOH . C 3 HOH B 77 577 173 HOH HOH . C 3 HOH B 78 578 95 HOH HOH . C 3 HOH B 79 579 104 HOH HOH . C 3 HOH B 80 580 78 HOH HOH . C 3 HOH B 81 581 116 HOH HOH . C 3 HOH B 82 582 21 HOH HOH . C 3 HOH B 83 583 70 HOH HOH . C 3 HOH B 84 584 97 HOH HOH . C 3 HOH B 85 585 191 HOH HOH . C 3 HOH B 86 586 30 HOH HOH . C 3 HOH B 87 587 84 HOH HOH . C 3 HOH B 88 588 82 HOH HOH . C 3 HOH B 89 589 22 HOH HOH . C 3 HOH B 90 590 76 HOH HOH . C 3 HOH B 91 591 37 HOH HOH . C 3 HOH B 92 592 199 HOH HOH . C 3 HOH B 93 593 53 HOH HOH . C 3 HOH B 94 594 63 HOH HOH . C 3 HOH B 95 595 46 HOH HOH . C 3 HOH B 96 596 43 HOH HOH . C 3 HOH B 97 597 55 HOH HOH . C 3 HOH B 98 598 183 HOH HOH . C 3 HOH B 99 599 107 HOH HOH . C 3 HOH B 100 600 28 HOH HOH . C 3 HOH B 101 601 200 HOH HOH . C 3 HOH B 102 602 98 HOH HOH . C 3 HOH B 103 603 134 HOH HOH . C 3 HOH B 104 604 114 HOH HOH . C 3 HOH B 105 605 57 HOH HOH . C 3 HOH B 106 606 39 HOH HOH . C 3 HOH B 107 607 29 HOH HOH . C 3 HOH B 108 608 217 HOH HOH . C 3 HOH B 109 609 32 HOH HOH . C 3 HOH B 110 610 138 HOH HOH . C 3 HOH B 111 611 66 HOH HOH . C 3 HOH B 112 612 135 HOH HOH . C 3 HOH B 113 613 132 HOH HOH . C 3 HOH B 114 614 17 HOH HOH . C 3 HOH B 115 615 211 HOH HOH . C 3 HOH B 116 616 129 HOH HOH . C 3 HOH B 117 617 182 HOH HOH . C 3 HOH B 118 618 62 HOH HOH . C 3 HOH B 119 619 24 HOH HOH . C 3 HOH B 120 620 38 HOH HOH . C 3 HOH B 121 621 125 HOH HOH . C 3 HOH B 122 622 124 HOH HOH . C 3 HOH B 123 623 48 HOH HOH . C 3 HOH B 124 624 33 HOH HOH . C 3 HOH B 125 625 65 HOH HOH . C 3 HOH B 126 626 67 HOH HOH . C 3 HOH B 127 627 69 HOH HOH . C 3 HOH B 128 628 110 HOH HOH . C 3 HOH B 129 629 232 HOH HOH . C 3 HOH B 130 630 130 HOH HOH . C 3 HOH B 131 631 156 HOH HOH . C 3 HOH B 132 632 101 HOH HOH . C 3 HOH B 133 633 45 HOH HOH . C 3 HOH B 134 634 190 HOH HOH . C 3 HOH B 135 635 155 HOH HOH . C 3 HOH B 136 636 106 HOH HOH . C 3 HOH B 137 637 220 HOH HOH . C 3 HOH B 138 638 121 HOH HOH . C 3 HOH B 139 639 15 HOH HOH . C 3 HOH B 140 640 151 HOH HOH . C 3 HOH B 141 641 140 HOH HOH . C 3 HOH B 142 642 181 HOH HOH . C 3 HOH B 143 643 122 HOH HOH . C 3 HOH B 144 644 180 HOH HOH . C 3 HOH B 145 645 230 HOH HOH . C 3 HOH B 146 646 133 HOH HOH . C 3 HOH B 147 647 94 HOH HOH . C 3 HOH B 148 648 157 HOH HOH . C 3 HOH B 149 649 92 HOH HOH . C 3 HOH B 150 650 131 HOH HOH . C 3 HOH B 151 651 154 HOH HOH . C 3 HOH B 152 652 11 HOH HOH . C 3 HOH B 153 653 58 HOH HOH . C 3 HOH B 154 654 168 HOH HOH . C 3 HOH B 155 655 36 HOH HOH . C 3 HOH B 156 656 214 HOH HOH . C 3 HOH B 157 657 196 HOH HOH . C 3 HOH B 158 658 170 HOH HOH . C 3 HOH B 159 659 212 HOH HOH . C 3 HOH B 160 660 93 HOH HOH . C 3 HOH B 161 661 163 HOH HOH . C 3 HOH B 162 662 111 HOH HOH . C 3 HOH B 163 663 89 HOH HOH . C 3 HOH B 164 664 237 HOH HOH . C 3 HOH B 165 665 185 HOH HOH . C 3 HOH B 166 666 120 HOH HOH . C 3 HOH B 167 667 128 HOH HOH . C 3 HOH B 168 668 204 HOH HOH . C 3 HOH B 169 669 193 HOH HOH . C 3 HOH B 170 670 205 HOH HOH . C 3 HOH B 171 671 234 HOH HOH . C 3 HOH B 172 672 210 HOH HOH . C 3 HOH B 173 673 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 O5O . . . B 2 -9.591 -3.548 -20.64 1 24.18 ? N1 O5O 401 B 1 HETATM 2 C C7 O5O . . . B 2 -8.993 -4.814 -18.349 1 24.93 ? C7 O5O 401 B 1 HETATM 3 C C8 O5O . . . B 2 -9.803 -6.033 -18.249 1 26.91 ? C8 O5O 401 B 1 HETATM 4 N N2 O5O . . . B 2 -7.38 -5.873 -16.843 1 22.95 ? N2 O5O 401 B 1 HETATM 5 C C9 O5O . . . B 2 -11.056 -6.225 -18.927 1 21.29 ? C9 O5O 401 B 1 HETATM 6 O O1 O5O . . . B 2 -11.049 -2.959 -23.767 1 30.61 ? O1 O5O 401 B 1 HETATM 7 C C1 O5O . . . B 2 -8.653 -5.9 -21.265 1 36.87 ? C1 O5O 401 B 1 HETATM 8 C C5 O5O . . . B 2 -8.616 -4.521 -22.925 1 31.78 ? C5 O5O 401 B 1 HETATM 9 C C6 O5O . . . B 2 -9.337 -3.569 -19.165 1 24.84 ? C6 O5O 401 B 1 HETATM 10 N N3 O5O . . . B 2 -9.478 -2.362 -18.65 1 24.67 ? N3 O5O 401 B 1 HETATM 11 C C4 O5O . . . B 2 -8.323 -8.279 -25.286 1 39.33 ? C4 O5O 401 B 1 HETATM 12 C C3 O5O . . . B 2 -7.609 -6.928 -23.292 1 34.25 ? C3 O5O 401 B 1 HETATM 13 C C2 O5O . . . B 2 -7.68 -5.664 -22.42 1 35.44 ? C2 O5O 401 B 1 HETATM 14 N N4 O5O . . . B 2 -9.921 -1.346 -24.829 1 31.19 ? N4 O5O 401 B 1 HETATM 15 N N O5O . . . B 2 -8.4 -7.049 -24.475 1 46.49 ? N O5O 401 B 1 HETATM 16 C C O5O . . . B 2 -9.544 -4.676 -21.643 1 24.52 ? C O5O 401 B 1 HETATM 17 O O O5O . . . B 2 -6.906 -7.82 -22.959 1 42.12 ? O O5O 401 B 1 HETATM 18 C C10 O5O . . . B 2 -11.799 -7.368 -18.834 1 20.98 ? C10 O5O 401 B 1 HETATM 19 C C11 O5O . . . B 2 -11.341 -8.45 -18.029 1 16.58 ? C11 O5O 401 B 1 HETATM 20 C C12 O5O . . . B 2 -10.16 -8.317 -17.365 1 19.87 ? C12 O5O 401 B 1 HETATM 21 C C13 O5O . . . B 2 -9.357 -7.141 -17.442 1 19.35 ? C13 O5O 401 B 1 HETATM 22 C C14 O5O . . . B 2 -8.111 -6.956 -16.767 1 20.15 ? C14 O5O 401 B 1 HETATM 23 C C15 O5O . . . B 2 -7.807 -4.797 -17.628 1 21.78 ? C15 O5O 401 B 1 HETATM 24 C C16 O5O . . . B 2 -9.83 -1.459 -19.707 1 25.63 ? C16 O5O 401 B 1 HETATM 25 C C17 O5O . . . B 2 -9.916 -2.148 -20.983 1 29.21 ? C17 O5O 401 B 1 HETATM 26 C C18 O5O . . . B 2 -10.254 -1.428 -22.186 1 23.89 ? C18 O5O 401 B 1 HETATM 27 C C19 O5O . . . B 2 -10.418 -1.937 -23.632 1 33.75 ? C19 O5O 401 B 1 HETATM 28 C C20 O5O . . . B 2 -10.127 -1.935 -26.183 1 40.88 ? C20 O5O 401 B 1 HETATM 29 C C21 O5O . . . B 2 -10.163 -0.815 -27.295 1 38.86 ? C21 O5O 401 B 1 HETATM 30 C C22 O5O . . . B 2 -11.324 0.202 -27.168 1 39.89 ? C22 O5O 401 B 1 HETATM 31 C C23 O5O . . . B 2 -12.609 -0.372 -26.543 1 38.88 ? C23 O5O 401 B 1 HETATM 32 C C24 O5O . . . B 2 -8.995 -3.01 -26.501 1 36.57 ? C24 O5O 401 B 1 HETATM 33 C C25 O5O . . . B 2 -9.283 -4.215 -27.186 1 35.12 ? C25 O5O 401 B 1 HETATM 34 C C26 O5O . . . B 2 -8.308 -5.181 -27.476 1 39.45 ? C26 O5O 401 B 1 HETATM 35 C C27 O5O . . . B 2 -6.976 -4.991 -27.078 1 39.2 ? C27 O5O 401 B 1 HETATM 36 C C28 O5O . . . B 2 -5.921 -6.133 -27.45 1 38.06 ? C28 O5O 401 B 1 HETATM 37 C C29 O5O . . . B 2 -6.647 -3.81 -26.393 1 34.24 ? C29 O5O 401 B 1 HETATM 38 C C30 O5O . . . B 2 -7.641 -2.853 -26.112 1 33.05 ? C30 O5O 401 B 1 HETATM 39 C C31 O5O . . . B 2 -10.487 -0.066 -22.067 1 20.89 ? C31 O5O 401 B 1 HETATM 40 C C32 O5O . . . B 2 -10.405 0.629 -20.819 1 20.75 ? C32 O5O 401 B 1 HETATM 41 C C33 O5O . . . B 2 -10.08 -0.067 -19.659 1 26.43 ? C33 O5O 401 B 1 HETATM 42 F F O5O . . . B 2 -6.293 -6.817 -28.499 1 45.85 ? F O5O 401 B 1 HETATM 43 F F1 O5O . . . B 2 -5.759 -7.028 -26.514 1 39.04 ? F1 O5O 401 B 1 HETATM 44 F F2 O5O . . . B 2 -4.733 -5.652 -27.705 1 34.77 ? F2 O5O 401 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #