data_7URD # _model_server_result.job_id vgxxFBzCrwi8nJO3tUT98g _model_server_result.datetime_utc '2024-11-29 16:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7URD # _exptl.entry_id 7URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 396.445 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-[(2P)-2',3-dimethyl[2,4'-bipyridin]-5-yl]-N-[(5P)-5-(pyrazin-2-yl)pyridin-2-yl]acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 17 1_555 A SG CYS 217 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 5 B CYS 203 1_555 B SG CYS 19 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 7 B CYS 205 1_555 B SG CYS 14 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 43 L CYS 43 1_555 C SG CYS 108 L CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 41 H CYS 41 1_555 D SG CYS 115 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 378 A CYS 370 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A SG CYS 384 A CYS 376 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A SG CYS 388 A CYS 380 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A ND1 HIS 390 A HIS 382 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'C23 H20 N6 O' _chem_comp.formula_weight 396.445 _chem_comp.id O50 _chem_comp.mon_nstd_flag . _chem_comp.name "2-[(2P)-2',3-dimethyl[2,4'-bipyridin]-5-yl]-N-[(5P)-5-(pyrazin-2-yl)pyridin-2-yl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N11 C12 O50 doub 499 n y N11 C10 O50 sing 500 n y C12 C13 O50 sing 501 n y C14 C10 O50 sing 502 n n C10 C09 O50 doub 503 n y C13 C08 O50 doub 504 n y C09 C08 O50 sing 505 n y C08 C07 O50 sing 506 n n C07 N06 O50 doub 507 n y C07 C02 O50 sing 508 n y N06 C05 O50 sing 509 n y C05 C04 O50 doub 510 n y C02 C01 O50 sing 511 n n C02 C03 O50 doub 512 n y C04 C03 O50 sing 513 n y C04 C15 O50 sing 514 n n N26 C27 O50 doub 515 n y N26 C25 O50 sing 516 n y C27 C28 O50 sing 517 n y C24 C23 O50 doub 518 n y C24 C19 O50 sing 519 n y C23 C22 O50 sing 520 n y N18 C19 O50 sing 521 n n N18 C16 O50 sing 522 n n C19 N20 O50 doub 523 n y C22 C25 O50 sing 524 n n C22 C21 O50 doub 525 n y C15 C16 O50 sing 526 n n C25 C30 O50 doub 527 n y C16 O17 O50 doub 528 n n C28 N29 O50 doub 529 n y N20 C21 O50 sing 530 n y C30 N29 O50 sing 531 n y C12 H1 O50 sing 532 n n C13 H2 O50 sing 533 n n C14 H3 O50 sing 534 n n C14 H4 O50 sing 535 n n C14 H5 O50 sing 536 n n C15 H6 O50 sing 537 n n C15 H7 O50 sing 538 n n C21 H8 O50 sing 539 n n C23 H9 O50 sing 540 n n C24 H10 O50 sing 541 n n C27 H11 O50 sing 542 n n C28 H12 O50 sing 543 n n C01 H13 O50 sing 544 n n C01 H14 O50 sing 545 n n C01 H15 O50 sing 546 n n C03 H16 O50 sing 547 n n C05 H17 O50 sing 548 n n C09 H18 O50 sing 549 n n C30 H19 O50 sing 550 n n N18 H20 O50 sing 551 n n # _atom_sites.entry_id 7URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 O50 A 1 501 1 O50 LGK . F 6 CLR A 1 502 5 CLR CLR . G 6 CLR A 1 503 11 CLR CLR . H 7 AJP A 1 504 101 AJP AJP . I 8 OLA A 1 505 201 OLA OLA . J 9 ZN A 1 506 1 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 O50 . . . E 5 108.967 108.895 104.32 1 48.74 ? C10 O50 501 A 1 HETATM 2 C C12 O50 . . . E 5 111.011 109.703 103.677 1 48.74 ? C12 O50 501 A 1 HETATM 3 C C13 O50 . . . E 5 111.497 109.566 104.963 1 48.74 ? C13 O50 501 A 1 HETATM 4 C C14 O50 . . . E 5 107.541 108.521 103.938 1 48.74 ? C14 O50 501 A 1 HETATM 5 C C15 O50 . . . E 5 113.512 108.718 111.034 1 48.74 ? C15 O50 501 A 1 HETATM 6 C C16 O50 . . . E 5 114.523 107.579 111.064 1 48.74 ? C16 O50 501 A 1 HETATM 7 C C19 O50 . . . E 5 116.983 106.893 110.979 1 48.74 ? C19 O50 501 A 1 HETATM 8 C C21 O50 . . . E 5 117.651 104.717 111.221 1 48.74 ? C21 O50 501 A 1 HETATM 9 C C22 O50 . . . E 5 118.972 105.061 111.018 1 48.74 ? C22 O50 501 A 1 HETATM 10 C C23 O50 . . . E 5 119.32 106.378 110.785 1 48.74 ? C23 O50 501 A 1 HETATM 11 C C24 O50 . . . E 5 118.287 107.298 110.77 1 48.74 ? C24 O50 501 A 1 HETATM 12 C C25 O50 . . . E 5 120.06 103.998 111.05 1 48.74 ? C25 O50 501 A 1 HETATM 13 C C27 O50 . . . E 5 120.746 101.871 110.674 1 48.74 ? C27 O50 501 A 1 HETATM 14 C C28 O50 . . . E 5 122.011 102.196 111.126 1 48.74 ? C28 O50 501 A 1 HETATM 15 N N29 O50 . . . E 5 122.263 103.425 111.527 1 48.74 ? N29 O50 501 A 1 HETATM 16 C C01 O50 . . . E 5 109.11 109.123 108.753 1 48.74 ? C01 O50 501 A 1 HETATM 17 C C02 O50 . . . E 5 110.627 109.002 108.6 1 48.74 ? C02 O50 501 A 1 HETATM 18 C C03 O50 . . . E 5 111.34 108.915 109.785 1 48.74 ? C03 O50 501 A 1 HETATM 19 C C04 O50 . . . E 5 112.716 108.804 109.735 1 48.74 ? C04 O50 501 A 1 HETATM 20 C C05 O50 . . . E 5 113.343 108.784 108.506 1 48.74 ? C05 O50 501 A 1 HETATM 21 C C07 O50 . . . E 5 111.312 108.963 107.378 1 48.74 ? C07 O50 501 A 1 HETATM 22 C C08 O50 . . . E 5 110.686 109.073 105.972 1 48.74 ? C08 O50 501 A 1 HETATM 23 C C09 O50 . . . E 5 109.388 108.727 105.627 1 48.74 ? C09 O50 501 A 1 HETATM 24 C C30 O50 . . . E 5 121.317 104.341 111.501 1 48.74 ? C30 O50 501 A 1 HETATM 25 N N06 O50 . . . E 5 112.629 108.868 107.401 1 48.74 ? N06 O50 501 A 1 HETATM 26 N N11 O50 . . . E 5 109.773 109.366 103.397 1 48.74 ? N11 O50 501 A 1 HETATM 27 N N18 O50 . . . E 5 115.936 107.902 110.957 1 48.74 ? N18 O50 501 A 1 HETATM 28 N N20 O50 . . . E 5 116.702 105.628 111.199 1 48.74 ? N20 O50 501 A 1 HETATM 29 N N26 O50 . . . E 5 119.79 102.776 110.642 1 48.74 ? N26 O50 501 A 1 HETATM 30 O O17 O50 . . . E 5 114.144 106.466 111.17 1 48.74 ? O17 O50 501 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #