data_7URD # _model_server_result.job_id HLzD0NzYiWSn-qxvx7rveQ _model_server_result.datetime_utc '2024-11-26 04:27:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 7URD # _exptl.entry_id 7URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 17 1_555 A SG CYS 217 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 5 B CYS 203 1_555 B SG CYS 19 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 7 B CYS 205 1_555 B SG CYS 14 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 43 L CYS 43 1_555 C SG CYS 108 L CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 41 H CYS 41 1_555 D SG CYS 115 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 378 A CYS 370 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A SG CYS 384 A CYS 376 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A SG CYS 388 A CYS 380 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A ND1 HIS 390 A HIS 382 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 257 n n C1 C10 CLR sing 258 n n C1 H11 CLR sing 259 n n C1 H12 CLR sing 260 n n C2 C3 CLR sing 261 n n C2 H21 CLR sing 262 n n C2 H22 CLR sing 263 n n C3 C4 CLR sing 264 n n C3 O1 CLR sing 265 n n C3 H3 CLR sing 266 n n C4 C5 CLR sing 267 n n C4 H41 CLR sing 268 n n C4 H42 CLR sing 269 n n C5 C6 CLR doub 270 n n C5 C10 CLR sing 271 n n C6 C7 CLR sing 272 n n C6 H6 CLR sing 273 n n C7 C8 CLR sing 274 n n C7 H71 CLR sing 275 n n C7 H72 CLR sing 276 n n C8 C9 CLR sing 277 n n C8 C14 CLR sing 278 n n C8 H8 CLR sing 279 n n C9 C10 CLR sing 280 n n C9 C11 CLR sing 281 n n C9 H9 CLR sing 282 n n C10 C19 CLR sing 283 n n C11 C12 CLR sing 284 n n C11 H111 CLR sing 285 n n C11 H112 CLR sing 286 n n C12 C13 CLR sing 287 n n C12 H121 CLR sing 288 n n C12 H122 CLR sing 289 n n C13 C14 CLR sing 290 n n C13 C17 CLR sing 291 n n C13 C18 CLR sing 292 n n C14 C15 CLR sing 293 n n C14 H14 CLR sing 294 n n C15 C16 CLR sing 295 n n C15 H151 CLR sing 296 n n C15 H152 CLR sing 297 n n C16 C17 CLR sing 298 n n C16 H161 CLR sing 299 n n C16 H162 CLR sing 300 n n C17 C20 CLR sing 301 n n C17 H17 CLR sing 302 n n C18 H181 CLR sing 303 n n C18 H182 CLR sing 304 n n C18 H183 CLR sing 305 n n C19 H191 CLR sing 306 n n C19 H192 CLR sing 307 n n C19 H193 CLR sing 308 n n C20 C21 CLR sing 309 n n C20 C22 CLR sing 310 n n C20 H20 CLR sing 311 n n C21 H211 CLR sing 312 n n C21 H212 CLR sing 313 n n C21 H213 CLR sing 314 n n C22 C23 CLR sing 315 n n C22 H221 CLR sing 316 n n C22 H222 CLR sing 317 n n C23 C24 CLR sing 318 n n C23 H231 CLR sing 319 n n C23 H232 CLR sing 320 n n C24 C25 CLR sing 321 n n C24 H241 CLR sing 322 n n C24 H242 CLR sing 323 n n C25 C26 CLR sing 324 n n C25 C27 CLR sing 325 n n C25 H25 CLR sing 326 n n C26 H261 CLR sing 327 n n C26 H262 CLR sing 328 n n C26 H263 CLR sing 329 n n C27 H271 CLR sing 330 n n C27 H272 CLR sing 331 n n C27 H273 CLR sing 332 n n O1 H1 CLR sing 333 n n # _atom_sites.entry_id 7URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 O50 A 1 501 1 O50 LGK . F 6 CLR A 1 502 5 CLR CLR . G 6 CLR A 1 503 11 CLR CLR . H 7 AJP A 1 504 101 AJP AJP . I 8 OLA A 1 505 201 OLA OLA . J 9 ZN A 1 506 1 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . F 6 96.164 92.947 99.29 1 89.93 ? C1 CLR 502 A 1 HETATM 2 C C2 CLR . . . F 6 94.775 92.439 99.661 1 89.93 ? C2 CLR 502 A 1 HETATM 3 C C3 CLR . . . F 6 94.039 91.889 98.443 1 89.93 ? C3 CLR 502 A 1 HETATM 4 C C4 CLR . . . F 6 94.823 90.723 97.851 1 89.93 ? C4 CLR 502 A 1 HETATM 5 C C5 CLR . . . F 6 96.246 91.162 97.609 1 89.93 ? C5 CLR 502 A 1 HETATM 6 C C6 CLR . . . F 6 96.818 90.976 96.41 1 89.93 ? C6 CLR 502 A 1 HETATM 7 C C7 CLR . . . F 6 98.287 90.645 96.279 1 89.93 ? C7 CLR 502 A 1 HETATM 8 C C8 CLR . . . F 6 99.077 91.226 97.446 1 89.93 ? C8 CLR 502 A 1 HETATM 9 C C9 CLR . . . F 6 98.319 92.354 98.145 1 89.93 ? C9 CLR 502 A 1 HETATM 10 C C10 CLR . . . F 6 97.015 91.821 98.72 1 89.93 ? C10 CLR 502 A 1 HETATM 11 C C11 CLR . . . F 6 99.142 93.072 99.223 1 89.93 ? C11 CLR 502 A 1 HETATM 12 C C12 CLR . . . F 6 100.574 93.406 98.799 1 89.93 ? C12 CLR 502 A 1 HETATM 13 C C13 CLR . . . F 6 101.206 92.149 98.232 1 89.93 ? C13 CLR 502 A 1 HETATM 14 C C14 CLR . . . F 6 100.421 91.768 97.002 1 89.93 ? C14 CLR 502 A 1 HETATM 15 C C15 CLR . . . F 6 101.331 90.842 96.21 1 89.93 ? C15 CLR 502 A 1 HETATM 16 C C16 CLR . . . F 6 102.747 91.305 96.559 1 89.93 ? C16 CLR 502 A 1 HETATM 17 C C17 CLR . . . F 6 102.637 92.266 97.742 1 89.93 ? C17 CLR 502 A 1 HETATM 18 C C18 CLR . . . F 6 101.115 91.029 99.262 1 89.93 ? C18 CLR 502 A 1 HETATM 19 C C19 CLR . . . F 6 97.303 90.782 99.797 1 89.93 ? C19 CLR 502 A 1 HETATM 20 C C20 CLR . . . F 6 103.642 91.933 98.835 1 89.93 ? C20 CLR 502 A 1 HETATM 21 C C21 CLR . . . F 6 103.924 93.151 99.706 1 89.93 ? C21 CLR 502 A 1 HETATM 22 C C22 CLR . . . F 6 104.925 91.367 98.236 1 89.93 ? C22 CLR 502 A 1 HETATM 23 C C23 CLR . . . F 6 106.15 92.141 98.711 1 89.93 ? C23 CLR 502 A 1 HETATM 24 C C24 CLR . . . F 6 107.271 92.075 97.68 1 89.93 ? C24 CLR 502 A 1 HETATM 25 C C25 CLR . . . F 6 107.529 90.638 97.245 1 89.93 ? C25 CLR 502 A 1 HETATM 26 C C26 CLR . . . F 6 108.61 90.577 96.173 1 89.93 ? C26 CLR 502 A 1 HETATM 27 C C27 CLR . . . F 6 107.894 89.763 98.438 1 89.93 ? C27 CLR 502 A 1 HETATM 28 O O1 CLR . . . F 6 92.738 91.438 98.837 1 89.93 ? O1 CLR 502 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 28 #