data_7URD # _model_server_result.job_id c46vFKBhvKGcqjM6wUI-kg _model_server_result.datetime_utc '2024-11-05 04:34:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":503}' # _entry.id 7URD # _exptl.entry_id 7URD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 17 1_555 A SG CYS 217 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 5 B CYS 203 1_555 B SG CYS 19 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 B SG CYS 7 B CYS 205 1_555 B SG CYS 14 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 43 L CYS 43 1_555 C SG CYS 108 L CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 D SG CYS 41 H CYS 41 1_555 D SG CYS 115 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A SG CYS 378 A CYS 370 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A SG CYS 384 A CYS 376 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc3 A SG CYS 388 A CYS 380 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc4 A ND1 HIS 390 A HIS 382 1_555 J ZN ZN . A ZN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7URD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 O50 A 1 501 1 O50 LGK . F 6 CLR A 1 502 5 CLR CLR . G 6 CLR A 1 503 11 CLR CLR . H 7 AJP A 1 504 101 AJP AJP . I 8 OLA A 1 505 201 OLA OLA . J 9 ZN A 1 506 1 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 6 98.104 132.803 86.361 1 116.83 ? C1 CLR 503 A 1 HETATM 2 C C2 CLR . . . G 6 96.611 132.876 86.061 1 116.83 ? C2 CLR 503 A 1 HETATM 3 C C3 CLR . . . G 6 96.338 132.805 84.562 1 116.83 ? C3 CLR 503 A 1 HETATM 4 C C4 CLR . . . G 6 96.868 131.49 84.001 1 116.83 ? C4 CLR 503 A 1 HETATM 5 C C5 CLR . . . G 6 98.31 131.322 84.414 1 116.83 ? C5 CLR 503 A 1 HETATM 6 C C6 CLR . . . G 6 99.246 131.035 83.498 1 116.83 ? C6 CLR 503 A 1 HETATM 7 C C7 CLR . . . G 6 100.43 130.153 83.823 1 116.83 ? C7 CLR 503 A 1 HETATM 8 C C8 CLR . . . G 6 100.768 130.229 85.308 1 116.83 ? C8 CLR 503 A 1 HETATM 9 C C9 CLR . . . G 6 100.208 131.495 85.954 1 116.83 ? C9 CLR 503 A 1 HETATM 10 C C10 CLR . . . G 6 98.689 131.49 85.859 1 116.83 ? C10 CLR 503 A 1 HETATM 11 C C11 CLR . . . G 6 100.666 131.704 87.404 1 116.83 ? C11 CLR 503 A 1 HETATM 12 C C12 CLR . . . G 6 102.157 131.452 87.633 1 116.83 ? C12 CLR 503 A 1 HETATM 13 C C13 CLR . . . G 6 102.504 130.103 87.032 1 116.83 ? C13 CLR 503 A 1 HETATM 14 C C14 CLR . . . G 6 102.266 130.199 85.546 1 116.83 ? C14 CLR 503 A 1 HETATM 15 C C15 CLR . . . G 6 103.055 129.051 84.935 1 116.83 ? C15 CLR 503 A 1 HETATM 16 C C16 CLR . . . G 6 104.231 128.839 85.891 1 116.83 ? C16 CLR 503 A 1 HETATM 17 C C17 CLR . . . G 6 103.949 129.655 87.152 1 116.83 ? C17 CLR 503 A 1 HETATM 18 C C18 CLR . . . G 6 101.594 129.036 87.628 1 116.83 ? C18 CLR 503 A 1 HETATM 19 C C19 CLR . . . G 6 98.116 130.322 86.653 1 116.83 ? C19 CLR 503 A 1 HETATM 20 C C20 CLR . . . G 6 104.187 128.845 88.418 1 116.83 ? C20 CLR 503 A 1 HETATM 21 C C21 CLR . . . G 6 103.832 129.656 89.659 1 116.83 ? C21 CLR 503 A 1 HETATM 22 C C22 CLR . . . G 6 105.626 128.346 88.485 1 116.83 ? C22 CLR 503 A 1 HETATM 23 C C23 CLR . . . G 6 105.711 126.875 88.095 1 116.83 ? C23 CLR 503 A 1 HETATM 24 C C24 CLR . . . G 6 107.149 126.47 87.795 1 116.83 ? C24 CLR 503 A 1 HETATM 25 C C25 CLR . . . G 6 107.195 125.174 86.995 1 116.83 ? C25 CLR 503 A 1 HETATM 26 C C26 CLR . . . G 6 106.5 125.338 85.649 1 116.83 ? C26 CLR 503 A 1 HETATM 27 C C27 CLR . . . G 6 108.631 124.696 86.814 1 116.83 ? C27 CLR 503 A 1 HETATM 28 O O1 CLR . . . G 6 94.928 132.888 84.33 1 116.83 ? O1 CLR 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #