data_7URE # _model_server_result.job_id gid1QEHAyVnkVNuWZJOQ2Q _model_server_result.datetime_utc '2025-08-31 03:11:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ure # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 7URE # _exptl.entry_id 7URE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1229.312 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Digitonin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 17 1_555 A SG CYS 217 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 43 L CYS 43 1_555 B SG CYS 108 L CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 C SG CYS 41 H CYS 41 1_555 C SG CYS 115 H CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 5 B CYS 203 1_555 D SG CYS 19 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 D SG CYS 7 B CYS 205 1_555 D SG CYS 14 B CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D C LEU 10 B LEU 208 1_555 D N DPP 11 B DPP 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 D C DPP 11 B DPP 209 1_555 D N GLY 12 B GLY 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A SG CYS 378 A CYS 370 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc2 A SG CYS 384 A CYS 376 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc3 A ND1 HIS 390 A HIS 382 1_555 F ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? # _chem_comp.formula 'C56 H92 O29' _chem_comp.formula_weight 1229.312 _chem_comp.id AJP _chem_comp.mon_nstd_flag . _chem_comp.name Digitonin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AJP sing 1 n n C02 C85 AJP sing 2 n n C02 C03 AJP sing 3 n n C85 O84 AJP sing 4 n n C03 C04 AJP sing 5 n n O84 C05 AJP sing 6 n n C05 C04 AJP sing 7 n n C05 O09 AJP sing 8 n n C05 C06 AJP sing 9 n n O09 C08 AJP sing 10 n n C08 C10 AJP sing 11 n n C08 C07 AJP sing 12 n n C83 C06 AJP sing 13 n n C06 C07 AJP sing 14 n n C10 O82 AJP sing 15 n n C10 C11 AJP sing 16 n n C07 C12 AJP sing 17 n n C11 C12 AJP sing 18 n n C11 C16 AJP sing 19 n n C12 C81 AJP sing 20 n n C12 C13 AJP sing 21 n n C17 C16 AJP sing 22 n n C17 C18 AJP sing 23 n n C13 C14 AJP sing 24 n n C16 C15 AJP sing 25 n n C15 C14 AJP sing 26 n n C15 C20 AJP sing 27 n n C18 C19 AJP sing 28 n n C19 C20 AJP sing 29 n n C19 C24 AJP sing 30 n n C20 C21 AJP sing 31 n n C20 C80 AJP sing 32 n n C21 C22 AJP sing 33 n n C24 C23 AJP sing 34 n n O33 C32 AJP sing 35 n n C23 C22 AJP sing 36 n n C23 O25 AJP sing 37 n n C32 C30 AJP sing 38 n n C22 O79 AJP sing 39 n n C30 O31 AJP sing 40 n n C30 C29 AJP sing 41 n n O31 C26 AJP sing 42 n n C26 O25 AJP sing 43 n n C26 C27 AJP sing 44 n n C29 C28 AJP sing 45 n n C29 O34 AJP sing 46 n n C41 C39 AJP sing 47 n n C41 O42 AJP sing 48 n n C28 C27 AJP sing 49 n n C28 O77 AJP sing 50 n n C27 O78 AJP sing 51 n n O40 C39 AJP sing 52 n n O40 C35 AJP sing 53 n n C39 C38 AJP sing 54 n n O34 C35 AJP sing 55 n n C35 C36 AJP sing 56 n n C38 O43 AJP sing 57 n n C38 C37 AJP sing 58 n n C36 C37 AJP sing 59 n n C36 O54 AJP sing 60 n n C37 O44 AJP sing 61 n n O54 C55 AJP sing 62 n n O76 C56 AJP sing 63 n n O50 C49 AJP sing 64 n n O50 C45 AJP sing 65 n n C56 C55 AJP sing 66 n n C56 C57 AJP sing 67 n n O44 C45 AJP sing 68 n n C55 O60 AJP sing 69 n n C49 C48 AJP sing 70 n n C45 C46 AJP sing 71 n n O60 C59 AJP sing 72 n n O63 C58 AJP sing 73 n n O75 C66 AJP sing 74 n n O64 C57 AJP sing 75 n n O64 C65 AJP sing 76 n n C57 C58 AJP sing 77 n n O62 C61 AJP sing 78 n n C48 O51 AJP sing 79 n n C48 C47 AJP sing 80 n n C58 C59 AJP sing 81 n n C59 C61 AJP sing 82 n n C46 C47 AJP sing 83 n n C46 O53 AJP sing 84 n n C66 C65 AJP sing 85 n n C66 C67 AJP sing 86 n n C65 O70 AJP sing 87 n n C47 O52 AJP sing 88 n n O74 C67 AJP sing 89 n n C67 C68 AJP sing 90 n n O70 C69 AJP sing 91 n n C68 C69 AJP sing 92 n n C68 O73 AJP sing 93 n n C69 C71 AJP sing 94 n n C71 O72 AJP sing 95 n n C01 H1 AJP sing 96 n n C01 H2 AJP sing 97 n n C01 H3 AJP sing 98 n n C02 H4 AJP sing 99 n n C03 H5 AJP sing 100 n n C03 H6 AJP sing 101 n n C04 H7 AJP sing 102 n n C04 H8 AJP sing 103 n n C06 H9 AJP sing 104 n n C07 H10 AJP sing 105 n n C08 H11 AJP sing 106 n n C10 H12 AJP sing 107 n n C11 H13 AJP sing 108 n n C13 H14 AJP sing 109 n n C13 H15 AJP sing 110 n n C14 H16 AJP sing 111 n n C14 H17 AJP sing 112 n n C15 H18 AJP sing 113 n n C16 H19 AJP sing 114 n n C17 H20 AJP sing 115 n n C17 H21 AJP sing 116 n n C18 H22 AJP sing 117 n n C18 H23 AJP sing 118 n n C19 H24 AJP sing 119 n n C21 H25 AJP sing 120 n n C21 H26 AJP sing 121 n n C22 H27 AJP sing 122 n n C23 H28 AJP sing 123 n n C24 H29 AJP sing 124 n n C24 H30 AJP sing 125 n n C26 H31 AJP sing 126 n n C27 H32 AJP sing 127 n n C28 H33 AJP sing 128 n n C29 H34 AJP sing 129 n n C30 H35 AJP sing 130 n n C32 H36 AJP sing 131 n n C32 H37 AJP sing 132 n n O33 H38 AJP sing 133 n n C35 H39 AJP sing 134 n n C36 H40 AJP sing 135 n n C37 H41 AJP sing 136 n n C38 H42 AJP sing 137 n n C39 H43 AJP sing 138 n n C41 H44 AJP sing 139 n n C41 H45 AJP sing 140 n n O42 H46 AJP sing 141 n n O43 H47 AJP sing 142 n n C45 H48 AJP sing 143 n n C46 H49 AJP sing 144 n n C47 H50 AJP sing 145 n n C48 H51 AJP sing 146 n n C49 H52 AJP sing 147 n n C49 H53 AJP sing 148 n n O51 H54 AJP sing 149 n n O52 H55 AJP sing 150 n n O53 H56 AJP sing 151 n n C55 H57 AJP sing 152 n n C56 H58 AJP sing 153 n n C57 H59 AJP sing 154 n n C58 H60 AJP sing 155 n n C59 H61 AJP sing 156 n n C61 H62 AJP sing 157 n n C61 H63 AJP sing 158 n n O62 H64 AJP sing 159 n n O63 H65 AJP sing 160 n n C65 H66 AJP sing 161 n n C66 H67 AJP sing 162 n n C67 H68 AJP sing 163 n n C68 H69 AJP sing 164 n n C69 H70 AJP sing 165 n n C71 H71 AJP sing 166 n n C71 H72 AJP sing 167 n n O72 H73 AJP sing 168 n n O73 H74 AJP sing 169 n n O74 H75 AJP sing 170 n n O75 H76 AJP sing 171 n n O76 H77 AJP sing 172 n n O77 H78 AJP sing 173 n n O78 H79 AJP sing 174 n n O79 H80 AJP sing 175 n n C80 H81 AJP sing 176 n n C80 H82 AJP sing 177 n n C80 H83 AJP sing 178 n n C81 H84 AJP sing 179 n n C81 H85 AJP sing 180 n n C81 H86 AJP sing 181 n n O82 H87 AJP sing 182 n n C83 H88 AJP sing 183 n n C83 H89 AJP sing 184 n n C83 H90 AJP sing 185 n n C85 H91 AJP sing 186 n n C85 H92 AJP sing 187 n n # _atom_sites.entry_id 7URE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 AJP A 1 501 101 AJP AJP . F 6 ZN A 1 502 1 ZN ZN . G 7 PAM B 1 601 601 PAM PAL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AJP . . . E 5 111.786 103.694 124.494 1 78.36 ? C01 AJP 501 A 1 HETATM 2 C C02 AJP . . . E 5 113.449 103.607 123.48 1 78.36 ? C02 AJP 501 A 1 HETATM 3 C C03 AJP . . . E 5 114.291 103.364 124.193 1 78.36 ? C03 AJP 501 A 1 HETATM 4 C C04 AJP . . . E 5 114.826 101.938 124.182 1 78.36 ? C04 AJP 501 A 1 HETATM 5 C C05 AJP . . . E 5 114.665 101.31 123.121 1 78.36 ? C05 AJP 501 A 1 HETATM 6 C C06 AJP . . . E 5 116.035 101.228 122.37 1 78.36 ? C06 AJP 501 A 1 HETATM 7 C C07 AJP . . . E 5 116.587 99.955 122.641 1 78.36 ? C07 AJP 501 A 1 HETATM 8 C C08 AJP . . . E 5 115.247 99.301 123.96 1 78.36 ? C08 AJP 501 A 1 HETATM 9 O O09 AJP . . . E 5 114.378 99.582 123.548 1 78.36 ? O09 AJP 501 A 1 HETATM 10 C C10 AJP . . . E 5 115.585 98.031 124.103 1 78.36 ? C10 AJP 501 A 1 HETATM 11 C C11 AJP . . . E 5 117.261 97.985 123.747 1 78.36 ? C11 AJP 501 A 1 HETATM 12 C C12 AJP . . . E 5 117.638 99.642 123.123 1 78.36 ? C12 AJP 501 A 1 HETATM 13 C C13 AJP . . . E 5 118.87 99.725 122.42 1 78.36 ? C13 AJP 501 A 1 HETATM 14 C C14 AJP . . . E 5 120.063 99.022 123.143 1 78.36 ? C14 AJP 501 A 1 HETATM 15 C C15 AJP . . . E 5 119.723 97.461 123.534 1 78.36 ? C15 AJP 501 A 1 HETATM 16 C C16 AJP . . . E 5 118.327 97.47 124.61 1 78.36 ? C16 AJP 501 A 1 HETATM 17 C C17 AJP . . . E 5 118.06 96.167 125.244 1 78.36 ? C17 AJP 501 A 1 HETATM 18 C C18 AJP . . . E 5 119.385 95.465 125.818 1 78.36 ? C18 AJP 501 A 1 HETATM 19 C C19 AJP . . . E 5 120.59 95.385 124.7 1 78.36 ? C19 AJP 501 A 1 HETATM 20 C C20 AJP . . . E 5 120.898 96.8 124.1 1 78.36 ? C20 AJP 501 A 1 HETATM 21 C C21 AJP . . . E 5 122.061 96.659 123.066 1 78.36 ? C21 AJP 501 A 1 HETATM 22 C C22 AJP . . . E 5 122.321 95.169 122.683 1 78.36 ? C22 AJP 501 A 1 HETATM 23 C C23 AJP . . . E 5 122.776 94.304 123.902 1 78.36 ? C23 AJP 501 A 1 HETATM 24 C C24 AJP . . . E 5 121.895 94.741 125.17 1 78.36 ? C24 AJP 501 A 1 HETATM 25 O O25 AJP . . . E 5 124.12 94.522 124.099 1 78.36 ? O25 AJP 501 A 1 HETATM 26 C C26 AJP . . . E 5 124.756 93.317 124.386 1 78.36 ? C26 AJP 501 A 1 HETATM 27 C C27 AJP . . . E 5 125.325 93.409 125.779 1 78.36 ? C27 AJP 501 A 1 HETATM 28 C C28 AJP . . . E 5 125.907 92.104 126.136 1 78.36 ? C28 AJP 501 A 1 HETATM 29 C C29 AJP . . . E 5 127.124 91.835 125.378 1 78.36 ? C29 AJP 501 A 1 HETATM 30 C C30 AJP . . . E 5 127.02 92.262 123.897 1 78.36 ? C30 AJP 501 A 1 HETATM 31 O O31 AJP . . . E 5 125.812 93.007 123.42 1 78.36 ? O31 AJP 501 A 1 HETATM 32 C C32 AJP . . . E 5 128.192 93.149 123.608 1 78.36 ? C32 AJP 501 A 1 HETATM 33 O O33 AJP . . . E 5 129.107 92.479 122.781 1 78.36 ? O33 AJP 501 A 1 HETATM 34 O O34 AJP . . . E 5 127.429 90.398 125.533 1 78.36 ? O34 AJP 501 A 1 HETATM 35 C C35 AJP . . . E 5 128.338 89.907 124.617 1 78.36 ? C35 AJP 501 A 1 HETATM 36 C C36 AJP . . . E 5 128.88 88.6 125.189 1 78.36 ? C36 AJP 501 A 1 HETATM 37 C C37 AJP . . . E 5 129.835 87.989 124.244 1 78.36 ? C37 AJP 501 A 1 HETATM 38 C C38 AJP . . . E 5 130.97 88.915 124.047 1 78.36 ? C38 AJP 501 A 1 HETATM 39 C C39 AJP . . . E 5 130.487 90.266 123.497 1 78.36 ? C39 AJP 501 A 1 HETATM 40 O O40 AJP . . . E 5 129.44 90.868 124.338 1 78.36 ? O40 AJP 501 A 1 HETATM 41 C C41 AJP . . . E 5 131.671 91.2 123.415 1 78.36 ? C41 AJP 501 A 1 HETATM 42 O O42 AJP . . . E 5 131.866 91.622 122.072 1 78.36 ? O42 AJP 501 A 1 HETATM 43 O O43 AJP . . . E 5 131.928 88.326 123.155 1 78.36 ? O43 AJP 501 A 1 HETATM 44 O O44 AJP . . . E 5 130.36 86.698 124.775 1 78.36 ? O44 AJP 501 A 1 HETATM 45 O O54 AJP . . . E 5 127.757 87.703 125.461 1 78.36 ? O54 AJP 501 A 1 HETATM 46 O O77 AJP . . . E 5 126.229 92.108 127.563 1 78.36 ? O77 AJP 501 A 1 HETATM 47 O O78 AJP . . . E 5 124.235 93.682 126.654 1 78.36 ? O78 AJP 501 A 1 HETATM 48 O O79 AJP . . . E 5 121.148 94.654 122.161 1 78.36 ? O79 AJP 501 A 1 HETATM 49 C C80 AJP . . . E 5 121.401 97.67 125.249 1 78.36 ? C80 AJP 501 A 1 HETATM 50 C C81 AJP . . . E 5 117.911 100.389 124.442 1 78.36 ? C81 AJP 501 A 1 HETATM 51 O O82 AJP . . . E 5 115.386 97.564 125.401 1 78.36 ? O82 AJP 501 A 1 HETATM 52 C C83 AJP . . . E 5 116.965 102.444 122.722 1 78.36 ? C83 AJP 501 A 1 HETATM 53 O O84 AJP . . . E 5 113.863 101.536 122.435 1 78.36 ? O84 AJP 501 A 1 HETATM 54 C C85 AJP . . . E 5 113.232 102.944 122.458 1 78.36 ? C85 AJP 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 54 #