data_7URS # _model_server_result.job_id spR1S04ZmxGg9lK24mOMpQ _model_server_result.datetime_utc '2024-10-12 02:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 7URS # _exptl.entry_id 7URS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.85 _cell.angle_gamma 90 _cell.entry_id 7URS _cell.length_a 194.467 _cell.length_b 86.626 _cell.length_c 57.718 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 C SG CYS 23 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf8 C SG CYS 136 L CYS 135 1_555 C SG CYS 196 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 258 n n C1 O1 NAG sing 259 n n C1 O5 NAG sing 260 n n C1 H1 NAG sing 261 n n C2 C3 NAG sing 262 n n C2 N2 NAG sing 263 n n C2 H2 NAG sing 264 n n C3 C4 NAG sing 265 n n C3 O3 NAG sing 266 n n C3 H3 NAG sing 267 n n C4 C5 NAG sing 268 n n C4 O4 NAG sing 269 n n C4 H4 NAG sing 270 n n C5 C6 NAG sing 271 n n C5 O5 NAG sing 272 n n C5 H5 NAG sing 273 n n C6 O6 NAG sing 274 n n C6 H61 NAG sing 275 n n C6 H62 NAG sing 276 n n C7 C8 NAG sing 277 n n C7 N2 NAG sing 278 n n C7 O7 NAG doub 279 n n C8 H81 NAG sing 280 n n C8 H82 NAG sing 281 n n C8 H83 NAG sing 282 n n N2 HN2 NAG sing 283 n n O1 HO1 NAG sing 284 n n O3 HO3 NAG sing 285 n n O4 HO4 NAG sing 286 n n O6 HO6 NAG sing 287 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7URS _atom_sites.fract_transf_matrix[1][1] 0.005142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1001 1001 NAG NAG . E 5 PO4 A 1 1002 1 PO4 PO4 . F 5 PO4 A 1 1003 2 PO4 PO4 . G 6 MPD A 1 1004 2 MPD MPD . H 6 MPD L 1 301 1 MPD MPD . I 7 HOH A 1 1101 17 HOH HOH . I 7 HOH A 2 1102 28 HOH HOH . I 7 HOH A 3 1103 1 HOH HOH . I 7 HOH A 4 1104 33 HOH HOH . I 7 HOH A 5 1105 97 HOH HOH . I 7 HOH A 6 1106 3 HOH HOH . I 7 HOH A 7 1107 16 HOH HOH . I 7 HOH A 8 1108 77 HOH HOH . I 7 HOH A 9 1109 5 HOH HOH . I 7 HOH A 10 1110 18 HOH HOH . I 7 HOH A 11 1111 85 HOH HOH . I 7 HOH A 12 1112 22 HOH HOH . I 7 HOH A 13 1113 32 HOH HOH . I 7 HOH A 14 1114 38 HOH HOH . I 7 HOH A 15 1115 39 HOH HOH . I 7 HOH A 16 1116 78 HOH HOH . I 7 HOH A 17 1117 98 HOH HOH . I 7 HOH A 18 1118 99 HOH HOH . I 7 HOH A 19 1119 63 HOH HOH . I 7 HOH A 20 1120 55 HOH HOH . I 7 HOH A 21 1121 30 HOH HOH . I 7 HOH A 22 1122 51 HOH HOH . I 7 HOH A 23 1123 71 HOH HOH . J 7 HOH H 1 301 96 HOH HOH . J 7 HOH H 2 302 6 HOH HOH . J 7 HOH H 3 303 49 HOH HOH . J 7 HOH H 4 304 91 HOH HOH . J 7 HOH H 5 305 68 HOH HOH . J 7 HOH H 6 306 83 HOH HOH . J 7 HOH H 7 307 2 HOH HOH . J 7 HOH H 8 308 76 HOH HOH . J 7 HOH H 9 309 62 HOH HOH . J 7 HOH H 10 310 15 HOH HOH . J 7 HOH H 11 311 57 HOH HOH . J 7 HOH H 12 312 73 HOH HOH . J 7 HOH H 13 313 11 HOH HOH . J 7 HOH H 14 314 52 HOH HOH . J 7 HOH H 15 315 53 HOH HOH . J 7 HOH H 16 316 20 HOH HOH . J 7 HOH H 17 317 65 HOH HOH . J 7 HOH H 18 318 23 HOH HOH . J 7 HOH H 19 319 79 HOH HOH . J 7 HOH H 20 320 14 HOH HOH . J 7 HOH H 21 321 34 HOH HOH . J 7 HOH H 22 322 35 HOH HOH . J 7 HOH H 23 323 75 HOH HOH . J 7 HOH H 24 324 10 HOH HOH . J 7 HOH H 25 325 88 HOH HOH . J 7 HOH H 26 326 50 HOH HOH . J 7 HOH H 27 327 25 HOH HOH . J 7 HOH H 28 328 90 HOH HOH . J 7 HOH H 29 329 4 HOH HOH . J 7 HOH H 30 330 19 HOH HOH . J 7 HOH H 31 331 100 HOH HOH . K 7 HOH L 1 401 26 HOH HOH . K 7 HOH L 2 402 46 HOH HOH . K 7 HOH L 3 403 81 HOH HOH . K 7 HOH L 4 404 59 HOH HOH . K 7 HOH L 5 405 84 HOH HOH . K 7 HOH L 6 406 8 HOH HOH . K 7 HOH L 7 407 44 HOH HOH . K 7 HOH L 8 408 93 HOH HOH . K 7 HOH L 9 409 43 HOH HOH . K 7 HOH L 10 410 56 HOH HOH . K 7 HOH L 11 411 12 HOH HOH . K 7 HOH L 12 412 66 HOH HOH . K 7 HOH L 13 413 21 HOH HOH . K 7 HOH L 14 414 7 HOH HOH . K 7 HOH L 15 415 74 HOH HOH . K 7 HOH L 16 416 70 HOH HOH . K 7 HOH L 17 417 47 HOH HOH . K 7 HOH L 18 418 58 HOH HOH . K 7 HOH L 19 419 40 HOH HOH . K 7 HOH L 20 420 13 HOH HOH . K 7 HOH L 21 421 9 HOH HOH . K 7 HOH L 22 422 29 HOH HOH . K 7 HOH L 23 423 80 HOH HOH . K 7 HOH L 24 424 64 HOH HOH . K 7 HOH L 25 425 41 HOH HOH . K 7 HOH L 26 426 86 HOH HOH . K 7 HOH L 27 427 61 HOH HOH . K 7 HOH L 28 428 54 HOH HOH . K 7 HOH L 29 429 72 HOH HOH . K 7 HOH L 30 430 67 HOH HOH . K 7 HOH L 31 431 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 4 -21.268 -18.13 2.941 1 129.74 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . D 4 -19.941 -17.681 3.623 1 132.98 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . D 4 -19.85 -16.147 3.64 1 132.92 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . D 4 -20.013 -15.583 2.234 1 131.58 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . D 4 -21.35 -16.039 1.659 1 135.44 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . D 4 -21.584 -15.558 0.244 1 133.04 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . D 4 -18.67 -18.574 5.56 1 132.05 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . D 4 -17.43 -18.468 4.717 1 123.82 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . D 4 -19.826 -18.208 4.978 1 136.3 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . D 4 -18.616 -15.713 4.204 1 136 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . D 4 -19.952 -14.159 2.252 1 123.26 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . D 4 -21.396 -17.476 1.63 1 132.42 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . D 4 -21.381 -14.155 0.123 1 119.84 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . D 4 -18.632 -19.003 6.712 1 132.4 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #