data_7URS # _model_server_result.job_id 2NeIgDrT0gJqOuKhJiCxGw _model_server_result.datetime_utc '2024-11-21 09:09:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1004}' # _entry.id 7URS # _exptl.entry_id 7URS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.85 _cell.angle_gamma 90 _cell.entry_id 7URS _cell.length_a 194.467 _cell.length_b 86.626 _cell.length_c 57.718 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 336 1_555 A SG CYS 43 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 61 A CYS 379 1_555 A SG CYS 114 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf3 A SG CYS 73 A CYS 391 1_555 A SG CYS 207 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 162 A CYS 480 1_555 A SG CYS 170 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 B SG CYS 145 H CYS 140 1_555 B SG CYS 201 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 C SG CYS 23 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? disulf ? disulf8 C SG CYS 136 L CYS 135 1_555 C SG CYS 196 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 A ND2 ASN 25 A ASN 343 1_555 D C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7URS _atom_sites.fract_transf_matrix[1][1] 0.005142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000892 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011544 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1001 1001 NAG NAG . E 5 PO4 A 1 1002 1 PO4 PO4 . F 5 PO4 A 1 1003 2 PO4 PO4 . G 6 MPD A 1 1004 2 MPD MPD . H 6 MPD L 1 301 1 MPD MPD . I 7 HOH A 1 1101 17 HOH HOH . I 7 HOH A 2 1102 28 HOH HOH . I 7 HOH A 3 1103 1 HOH HOH . I 7 HOH A 4 1104 33 HOH HOH . I 7 HOH A 5 1105 97 HOH HOH . I 7 HOH A 6 1106 3 HOH HOH . I 7 HOH A 7 1107 16 HOH HOH . I 7 HOH A 8 1108 77 HOH HOH . I 7 HOH A 9 1109 5 HOH HOH . I 7 HOH A 10 1110 18 HOH HOH . I 7 HOH A 11 1111 85 HOH HOH . I 7 HOH A 12 1112 22 HOH HOH . I 7 HOH A 13 1113 32 HOH HOH . I 7 HOH A 14 1114 38 HOH HOH . I 7 HOH A 15 1115 39 HOH HOH . I 7 HOH A 16 1116 78 HOH HOH . I 7 HOH A 17 1117 98 HOH HOH . I 7 HOH A 18 1118 99 HOH HOH . I 7 HOH A 19 1119 63 HOH HOH . I 7 HOH A 20 1120 55 HOH HOH . I 7 HOH A 21 1121 30 HOH HOH . I 7 HOH A 22 1122 51 HOH HOH . I 7 HOH A 23 1123 71 HOH HOH . J 7 HOH H 1 301 96 HOH HOH . J 7 HOH H 2 302 6 HOH HOH . J 7 HOH H 3 303 49 HOH HOH . J 7 HOH H 4 304 91 HOH HOH . J 7 HOH H 5 305 68 HOH HOH . J 7 HOH H 6 306 83 HOH HOH . J 7 HOH H 7 307 2 HOH HOH . J 7 HOH H 8 308 76 HOH HOH . J 7 HOH H 9 309 62 HOH HOH . J 7 HOH H 10 310 15 HOH HOH . J 7 HOH H 11 311 57 HOH HOH . J 7 HOH H 12 312 73 HOH HOH . J 7 HOH H 13 313 11 HOH HOH . J 7 HOH H 14 314 52 HOH HOH . J 7 HOH H 15 315 53 HOH HOH . J 7 HOH H 16 316 20 HOH HOH . J 7 HOH H 17 317 65 HOH HOH . J 7 HOH H 18 318 23 HOH HOH . J 7 HOH H 19 319 79 HOH HOH . J 7 HOH H 20 320 14 HOH HOH . J 7 HOH H 21 321 34 HOH HOH . J 7 HOH H 22 322 35 HOH HOH . J 7 HOH H 23 323 75 HOH HOH . J 7 HOH H 24 324 10 HOH HOH . J 7 HOH H 25 325 88 HOH HOH . J 7 HOH H 26 326 50 HOH HOH . J 7 HOH H 27 327 25 HOH HOH . J 7 HOH H 28 328 90 HOH HOH . J 7 HOH H 29 329 4 HOH HOH . J 7 HOH H 30 330 19 HOH HOH . J 7 HOH H 31 331 100 HOH HOH . K 7 HOH L 1 401 26 HOH HOH . K 7 HOH L 2 402 46 HOH HOH . K 7 HOH L 3 403 81 HOH HOH . K 7 HOH L 4 404 59 HOH HOH . K 7 HOH L 5 405 84 HOH HOH . K 7 HOH L 6 406 8 HOH HOH . K 7 HOH L 7 407 44 HOH HOH . K 7 HOH L 8 408 93 HOH HOH . K 7 HOH L 9 409 43 HOH HOH . K 7 HOH L 10 410 56 HOH HOH . K 7 HOH L 11 411 12 HOH HOH . K 7 HOH L 12 412 66 HOH HOH . K 7 HOH L 13 413 21 HOH HOH . K 7 HOH L 14 414 7 HOH HOH . K 7 HOH L 15 415 74 HOH HOH . K 7 HOH L 16 416 70 HOH HOH . K 7 HOH L 17 417 47 HOH HOH . K 7 HOH L 18 418 58 HOH HOH . K 7 HOH L 19 419 40 HOH HOH . K 7 HOH L 20 420 13 HOH HOH . K 7 HOH L 21 421 9 HOH HOH . K 7 HOH L 22 422 29 HOH HOH . K 7 HOH L 23 423 80 HOH HOH . K 7 HOH L 24 424 64 HOH HOH . K 7 HOH L 25 425 41 HOH HOH . K 7 HOH L 26 426 86 HOH HOH . K 7 HOH L 27 427 61 HOH HOH . K 7 HOH L 28 428 54 HOH HOH . K 7 HOH L 29 429 72 HOH HOH . K 7 HOH L 30 430 67 HOH HOH . K 7 HOH L 31 431 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 6 -31.08 -46.738 25.795 1 103.03 ? C1 MPD 1004 A 1 HETATM 2 C C2 MPD . . . G 6 -30.916 -45.546 24.834 1 97.57 ? C2 MPD 1004 A 1 HETATM 3 O O2 MPD . . . G 6 -30.307 -44.418 25.551 1 71.09 ? O2 MPD 1004 A 1 HETATM 4 C CM MPD . . . G 6 -32.287 -45.047 24.355 1 90.56 ? CM MPD 1004 A 1 HETATM 5 C C3 MPD . . . G 6 -29.965 -45.917 23.687 1 87.57 ? C3 MPD 1004 A 1 HETATM 6 C C4 MPD . . . G 6 -30.252 -47.234 22.94 1 95.44 ? C4 MPD 1004 A 1 HETATM 7 O O4 MPD . . . G 6 -31.63 -47.441 22.678 1 86.39 ? O4 MPD 1004 A 1 HETATM 8 C C5 MPD . . . G 6 -29.453 -47.33 21.632 1 65.52 ? C5 MPD 1004 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #