data_7URT # _model_server_result.job_id DZ3vZ8iZNBLmmaeqVmvaxQ _model_server_result.datetime_utc '2024-12-22 05:03:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7urt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7URT # _exptl.entry_id 7URT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URT _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-meric 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 (1-60) A,B,C 2 1 A,B,C 3 (1-5) A,B,C 4 (1,2,6,10,23,24) A,B,C 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 1 0 0 0 1 0 0 0 1 -276.48001 -276.48001 -276.48001 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 276.48001 -170.87404 105.60597 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 552.96002 0 0 4 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 447.35405 276.48001 -170.87404 5 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 105.60597 276.48001 -170.87404 6 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 552.96002 552.96002 0 7 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 276.48001 723.83406 105.60597 8 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 552.96002 0 9 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 105.60597 276.48001 -170.87404 10 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 447.35405 276.48001 -170.87404 11 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 552.96002 0 552.96002 12 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 276.48001 -170.87404 447.35405 13 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 552.96002 14 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 105.60597 276.48001 723.83406 15 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 447.35405 276.48001 723.83406 16 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 552.96002 552.96002 17 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 276.48001 723.83406 447.35405 18 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 552.96002 552.96002 552.96002 19 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 447.35405 276.48001 723.83406 20 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 105.60597 276.48001 723.83406 21 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 22 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 105.60597 276.48001 -170.87404 23 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 552.96002 0 24 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 -170.87404 447.35405 276.48001 25 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 -170.87404 105.60597 276.48001 26 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 552.96002 552.96002 27 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 105.60597 276.48001 723.83406 28 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 552.96002 29 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 -170.87404 105.60597 276.48001 30 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 -170.87404 447.35405 276.48001 31 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 552.96002 552.96002 0 32 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 447.35405 276.48001 -170.87404 33 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 552.96002 0 0 34 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 723.83406 105.60597 276.48001 35 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 723.83406 447.35405 276.48001 36 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 552.96002 0 552.96002 37 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 447.35405 276.48001 723.83406 38 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 552.96002 552.96002 552.96002 39 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 723.83406 447.35405 276.48001 40 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 723.83406 105.60597 276.48001 41 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 42 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 -170.87404 105.60597 276.48001 43 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 552.96002 44 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 276.48001 -170.87404 447.35405 45 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 276.48001 -170.87404 105.60597 46 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 552.96002 0 552.96002 47 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 723.83406 105.60597 276.48001 48 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 552.96002 0 0 49 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 276.48001 -170.87404 105.60597 50 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 276.48001 -170.87404 447.35405 51 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 552.96002 552.96002 52 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 -170.87404 447.35405 276.48001 53 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 552.96002 0 54 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 276.48001 723.83406 105.60597 55 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 276.48001 723.83406 447.35405 56 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 552.96002 552.96002 0 57 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 723.83406 447.35405 276.48001 58 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 552.96002 552.96002 552.96002 59 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 276.48001 723.83406 447.35405 60 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 276.48001 723.83406 105.60597 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 150 n n C1 C6 IHP sing 151 n n C1 O11 IHP sing 152 n n C1 H1 IHP sing 153 n n C2 C3 IHP sing 154 n n C2 O12 IHP sing 155 n n C2 H2 IHP sing 156 n n C3 C4 IHP sing 157 n n C3 O13 IHP sing 158 n n C3 H3 IHP sing 159 n n C4 C5 IHP sing 160 n n C4 O14 IHP sing 161 n n C4 H4 IHP sing 162 n n C5 C6 IHP sing 163 n n C5 O15 IHP sing 164 n n C5 H5 IHP sing 165 n n C6 O16 IHP sing 166 n n C6 H6 IHP sing 167 n n O11 P1 IHP sing 168 n n P1 O21 IHP doub 169 n n P1 O31 IHP sing 170 n n P1 O41 IHP sing 171 n n O31 H31 IHP sing 172 n n O41 H41 IHP sing 173 n n O12 P2 IHP sing 174 n n P2 O22 IHP doub 175 n n P2 O32 IHP sing 176 n n P2 O42 IHP sing 177 n n O32 H32 IHP sing 178 n n O42 H42 IHP sing 179 n n O13 P3 IHP sing 180 n n P3 O23 IHP doub 181 n n P3 O33 IHP sing 182 n n P3 O43 IHP sing 183 n n O33 H33 IHP sing 184 n n O43 H43 IHP sing 185 n n O14 P4 IHP sing 186 n n P4 O24 IHP doub 187 n n P4 O34 IHP sing 188 n n P4 O44 IHP sing 189 n n O34 H34 IHP sing 190 n n O44 H44 IHP sing 191 n n O15 P5 IHP sing 192 n n P5 O25 IHP doub 193 n n P5 O35 IHP sing 194 n n P5 O45 IHP sing 195 n n O35 H35 IHP sing 196 n n O45 H45 IHP sing 197 n n O16 P6 IHP sing 198 n n P6 O26 IHP doub 199 n n P6 O36 IHP sing 200 n n P6 O46 IHP sing 201 n n O36 H36 IHP sing 202 n n O46 H46 IHP sing 203 n n # _atom_sites.entry_id 7URT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IHP A 1 401 401 IHP IHP . C 2 IHP A 1 402 401 IHP IHP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . C 2 274.905 318.747 343.265 0.01 60 ? C1 IHP 402 A 1 HETATM 2 C C2 IHP . . . C 2 275.757 319.086 342.04 0.01 60 ? C2 IHP 402 A 1 HETATM 3 C C3 IHP . . . C 2 277.121 319.624 342.49 0.01 60 ? C3 IHP 402 A 1 HETATM 4 C C4 IHP . . . C 2 277.842 318.513 343.285 0.01 60 ? C4 IHP 402 A 1 HETATM 5 C C5 IHP . . . C 2 277.003 317.963 344.455 0.01 60 ? C5 IHP 402 A 1 HETATM 6 C C6 IHP . . . C 2 275.551 317.602 344.079 0.01 60 ? C6 IHP 402 A 1 HETATM 7 O O11 IHP . . . C 2 273.599 318.308 342.808 0.01 60 ? O11 IHP 402 A 1 HETATM 8 P P1 IHP . . . C 2 272.244 318.895 343.499 0.01 60 ? P1 IHP 402 A 1 HETATM 9 O O21 IHP . . . C 2 271.501 317.591 343.842 0.01 60 ? O21 IHP 402 A 1 HETATM 10 O O31 IHP . . . C 2 272.589 319.668 344.728 0.01 60 ? O31 IHP 402 A 1 HETATM 11 O O41 IHP . . . C 2 271.51 319.67 342.428 0.01 60 ? O41 IHP 402 A 1 HETATM 12 O O12 IHP . . . C 2 275.978 317.898 341.25 0.01 60 ? O12 IHP 402 A 1 HETATM 13 P P2 IHP . . . C 2 275.445 317.694 339.725 0.01 60 ? P2 IHP 402 A 1 HETATM 14 O O22 IHP . . . C 2 275.213 319.04 339.092 0.01 60 ? O22 IHP 402 A 1 HETATM 15 O O32 IHP . . . C 2 274.185 316.869 339.921 0.01 60 ? O32 IHP 402 A 1 HETATM 16 O O42 IHP . . . C 2 276.589 316.89 339.159 0.01 60 ? O42 IHP 402 A 1 HETATM 17 O O13 IHP . . . C 2 277.897 319.907 341.319 0.01 60 ? O13 IHP 402 A 1 HETATM 18 P P3 IHP . . . C 2 278.588 321.346 341.05 0.01 60 ? P3 IHP 402 A 1 HETATM 19 O O23 IHP . . . C 2 278.45 322.205 342.26 0.01 60 ? O23 IHP 402 A 1 HETATM 20 O O33 IHP . . . C 2 280.063 320.971 340.843 0.01 60 ? O33 IHP 402 A 1 HETATM 21 O O43 IHP . . . C 2 278.088 321.84 339.742 0.01 60 ? O43 IHP 402 A 1 HETATM 22 O O14 IHP . . . C 2 279.078 319.006 343.791 0.01 60 ? O14 IHP 402 A 1 HETATM 23 P P4 IHP . . . C 2 280.54 318.536 343.248 0.01 60 ? P4 IHP 402 A 1 HETATM 24 O O24 IHP . . . C 2 280.405 317.217 342.587 0.01 60 ? O24 IHP 402 A 1 HETATM 25 O O34 IHP . . . C 2 281.003 319.561 342.264 0.01 60 ? O34 IHP 402 A 1 HETATM 26 O O44 IHP . . . C 2 281.429 318.605 344.457 0.01 60 ? O44 IHP 402 A 1 HETATM 27 O O15 IHP . . . C 2 277.683 316.794 344.924 0.01 60 ? O15 IHP 402 A 1 HETATM 28 P P5 IHP . . . C 2 278.224 316.569 346.424 0.01 60 ? P5 IHP 402 A 1 HETATM 29 O O25 IHP . . . C 2 278.496 317.852 347.108 0.01 60 ? O25 IHP 402 A 1 HETATM 30 O O35 IHP . . . C 2 279.384 315.6 346.283 0.01 60 ? O35 IHP 402 A 1 HETATM 31 O O45 IHP . . . C 2 277.03 315.854 347.08 0.01 60 ? O45 IHP 402 A 1 HETATM 32 O O16 IHP . . . C 2 274.804 317.409 345.272 0.01 60 ? O16 IHP 402 A 1 HETATM 33 P P6 IHP . . . C 2 274.07 315.973 345.588 0.01 60 ? P6 IHP 402 A 1 HETATM 34 O O26 IHP . . . C 2 273.126 315.68 344.444 0.01 60 ? O26 IHP 402 A 1 HETATM 35 O O36 IHP . . . C 2 275.21 314.975 345.615 0.01 60 ? O36 IHP 402 A 1 HETATM 36 O O46 IHP . . . C 2 273.45 316.163 346.941 0.01 60 ? O46 IHP 402 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 36 #