data_7URY # _model_server_result.job_id 32O7zyS8Z2VmDsUWzWkckA _model_server_result.datetime_utc '2024-10-19 15:38:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ury # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 7URY # _exptl.entry_id 7URY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MALATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7URY _cell.length_a 105.712 _cell.length_b 182.795 _cell.length_c 110.521 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7URY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_455 -x-1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 -105.712 0 55.2605 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id MLT _chem_comp.mon_nstd_flag . _chem_comp.name D-MALATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-HYDROXYBUTANEDIOIC ACID;2-HYDROXY-SUCCINIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MLT doub 235 n n C1 O2 MLT sing 236 n n C1 C2 MLT sing 237 n n C2 O3 MLT sing 238 n n C2 C3 MLT sing 239 n n C2 H2 MLT sing 240 n n O3 HO3 MLT sing 241 n n C3 C4 MLT sing 242 n n C3 H31 MLT sing 243 n n C3 H32 MLT sing 244 n n C4 O4 MLT doub 245 n n C4 O5 MLT sing 246 n n O5 HO5 MLT sing 247 n n O2 H6 MLT sing 248 n n # _atom_sites.entry_id 7URY _atom_sites.fract_transf_matrix[1][1] 0.00946 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005471 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MLT A 1 701 740 MLT MLT . I 2 MLT D 1 701 740 MLT MLT . J 2 MLT E 1 701 740 MLT MLT . K 2 MLT F 1 701 740 MLT MLT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLT . . . K 2 -58.974 -87.945 16.769 1 81.65 ? C1 MLT 701 F 1 HETATM 2 O O1 MLT . . . K 2 -57.817 -87.853 16.312 1 81.53 ? O1 MLT 701 F 1 HETATM 3 O O2 MLT . . . K 2 -59.393 -88.86 17.526 1 69.92 ? O2 MLT 701 F 1 HETATM 4 C C2 MLT . . . K 2 -59.945 -86.835 16.354 1 86.06 ? C2 MLT 701 F 1 HETATM 5 O O3 MLT . . . K 2 -59.228 -85.625 16.16 1 86.82 ? O3 MLT 701 F 1 HETATM 6 C C3 MLT . . . K 2 -61.072 -86.643 17.383 1 85.78 ? C3 MLT 701 F 1 HETATM 7 C C4 MLT . . . K 2 -61.84 -85.355 17.152 1 86.98 ? C4 MLT 701 F 1 HETATM 8 O O4 MLT . . . K 2 -62.32 -85.151 16.017 1 83.91 ? O4 MLT 701 F 1 HETATM 9 O O5 MLT . . . K 2 -61.953 -84.561 18.108 1 89.51 ? O5 MLT 701 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 9 #