data_7US2
#
_model_server_result.job_id            wKpYdcUrYctDAnZsS5XBMw 
_model_server_result.datetime_utc      '2024-10-19 16:35:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7us2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":801}' 
#
_entry.id    7US2 
#
_exptl.entry_id    7US2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7US2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7US2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 262 A THR 388 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc2 H O1B AGS . A AGS 801 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc3 H O1A AGS . A AGS 801 1_555 I MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc4 B OG1 THR 262 B THR 388 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc5 B OD1 ASP 328 B ASP 454 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc6 B OD2 ASP 328 B ASP 454 1_555 K MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc7 C OG1 THR 262 C THR 388 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc8 L O1B AGS . C AGS 801 1_555 M MG MG . C MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc9 D OG1 THR 262 D THR 388 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc10 N O1B AGS . D AGS 801 1_555 O MG MG . D MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? 
metalc ? metalc11 E OG1 THR 262 E THR 388 1_555 Q MG MG . E MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc12 F OG1 THR 262 F THR 388 1_555 S MG MG . F MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc13 R O3G AGS . F AGS 801 1_555 S MG MG . F MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? 
metalc ? metalc14 R O1B AGS . F AGS 801 1_555 S MG MG . F MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc15 R O3B AGS . F AGS 801 1_555 S MG MG . F MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc16 R O1A AGS . F AGS 801 1_555 S MG MG . F MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 1 n n 
PG O2G AGS sing 2 n n 
PG O3G AGS sing 3 n n 
PG O3B AGS sing 4 n n 
PB O1B AGS doub 5 n n 
PB O2B AGS sing 6 n n 
PB O3B AGS sing 7 n n 
PB O3A AGS sing 8 n n 
PA O1A AGS doub 9 n n 
PA O2A AGS sing 10 n n 
PA O3A AGS sing 11 n n 
PA O5' AGS sing 12 n n 
O5' C5' AGS sing 13 n n 
C5' C4' AGS sing 14 n n 
C4' O4' AGS sing 15 n n 
C4' C3' AGS sing 16 n n 
O4' C1' AGS sing 17 n n 
C3' O3' AGS sing 18 n n 
C3' C2' AGS sing 19 n n 
C2' O2' AGS sing 20 n n 
C2' C1' AGS sing 21 n n 
C1' N9 AGS sing 22 n n 
N9 C8 AGS sing 23 n y 
N9 C4 AGS sing 24 n y 
C8 N7 AGS doub 25 n y 
N7 C5 AGS sing 26 n y 
C5 C6 AGS sing 27 n y 
C5 C4 AGS doub 28 n y 
C6 N6 AGS sing 29 n n 
C6 N1 AGS doub 30 n y 
N1 C2 AGS sing 31 n y 
C2 N3 AGS doub 32 n y 
N3 C4 AGS sing 33 n y 
O2G HOG2 AGS sing 34 n n 
O3G H21 AGS sing 35 n n 
O2B HOB2 AGS sing 36 n n 
O2A HOA2 AGS sing 37 n n 
C5' "H5'1" AGS sing 38 n n 
C5' "H5'2" AGS sing 39 n n 
C4' H4' AGS sing 40 n n 
C3' H3' AGS sing 41 n n 
O3' HO3' AGS sing 42 n n 
C2' H2' AGS sing 43 n n 
O2' HO2' AGS sing 44 n n 
C1' H1' AGS sing 45 n n 
C8 H8 AGS sing 46 n n 
N6 HN61 AGS sing 47 n n 
N6 HN62 AGS sing 48 n n 
C2 H2 AGS sing 49 n n 
#
_atom_sites.entry_id                     7US2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 3 AGS A 1 801 801 AGS AGS . 
I 4 MG A 1 802 802 MG MG . 
J 3 AGS B 1 801 801 AGS AGS . 
K 4 MG B 1 802 802 MG MG . 
L 3 AGS C 1 801 801 AGS AGS . 
M 4 MG C 1 802 802 MG MG . 
N 3 AGS D 1 801 801 AGS AGS . 
O 4 MG D 1 802 802 MG MG . 
P 3 AGS E 1 801 801 AGS AGS . 
Q 4 MG E 1 802 802 MG MG . 
R 3 AGS F 1 801 801 AGS AGS . 
S 4 MG F 1 802 802 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . R 3 184.097 176.805 213.777 1 56.5 ? PG AGS 801 F 1 
HETATM 2 S S1G AGS . . . R 3 185.347 176.509 212.384 1 77.59 ? S1G AGS 801 F 1 
HETATM 3 O O2G AGS . . . R 3 182.933 177.708 213.149 1 64.79 ? O2G AGS 801 F 1 
HETATM 4 O O3G AGS . . . R 3 184.664 177.992 214.684 1 68.54 ? O3G AGS 801 F 1 
HETATM 5 P PB AGS . . . R 3 183.955 173.965 215.119 1 53.81 ? PB AGS 801 F 1 
HETATM 6 O O1B AGS . . . R 3 185.359 174.139 214.679 1 64.34 ? O1B AGS 801 F 1 
HETATM 7 O O2B AGS . . . R 3 182.7 173.5 214.481 1 71.87 ? O2B AGS 801 F 1 
HETATM 8 O O3B AGS . . . R 3 183.535 175.712 214.653 1 46.5 ? O3B AGS 801 F 1 
HETATM 9 P PA AGS . . . R 3 185.096 173.838 217.74 1 53.66 ? PA AGS 801 F 1 
HETATM 10 O O1A AGS . . . R 3 185.512 175.224 217.391 1 70.12 ? O1A AGS 801 F 1 
HETATM 11 O O2A AGS . . . R 3 185.951 172.693 218.15 1 62.15 ? O2A AGS 801 F 1 
HETATM 12 O O3A AGS . . . R 3 184.077 173.446 216.593 1 44.16 ? O3A AGS 801 F 1 
HETATM 13 O O5' AGS . . . R 3 184.239 174.091 219.256 1 65.25 ? O5' AGS 801 F 1 
HETATM 14 C C5' AGS . . . R 3 184.979 174.434 220.346 1 66.56 ? C5' AGS 801 F 1 
HETATM 15 C C4' AGS . . . R 3 184.156 174.022 221.58 1 62.55 ? C4' AGS 801 F 1 
HETATM 16 O O4' AGS . . . R 3 183.063 173.243 221.142 1 51.15 ? O4' AGS 801 F 1 
HETATM 17 C C3' AGS . . . R 3 185.003 173.15 222.527 1 65.39 ? C3' AGS 801 F 1 
HETATM 18 O O3' AGS . . . R 3 184.931 173.447 223.874 1 63.85 ? O3' AGS 801 F 1 
HETATM 19 C C2' AGS . . . R 3 184.434 171.737 222.266 1 63.28 ? C2' AGS 801 F 1 
HETATM 20 O O2' AGS . . . R 3 184.333 171.107 223.508 1 65.5 ? O2' AGS 801 F 1 
HETATM 21 C C1' AGS . . . R 3 182.97 172.066 221.844 1 52.67 ? C1' AGS 801 F 1 
HETATM 22 N N9 AGS . . . R 3 182.387 171.021 220.991 1 49.09 ? N9 AGS 801 F 1 
HETATM 23 C C8 AGS . . . R 3 181.948 171.203 219.664 1 59.7 ? C8 AGS 801 F 1 
HETATM 24 N N7 AGS . . . R 3 181.449 170.097 219.102 1 62.44 ? N7 AGS 801 F 1 
HETATM 25 C C5 AGS . . . R 3 181.569 169.13 220.09 1 51.82 ? C5 AGS 801 F 1 
HETATM 26 C C6 AGS . . . R 3 181.226 167.766 220.1 1 49.12 ? C6 AGS 801 F 1 
HETATM 27 N N6 AGS . . . R 3 180.668 167.137 219.025 1 55.94 ? N6 AGS 801 F 1 
HETATM 28 N N1 AGS . . . R 3 181.449 167.02 221.23 1 60.15 ? N1 AGS 801 F 1 
HETATM 29 C C2 AGS . . . R 3 182.011 167.664 222.298 1 65.14 ? C2 AGS 801 F 1 
HETATM 30 N N3 AGS . . . R 3 182.388 168.954 222.424 1 69.9 ? N3 AGS 801 F 1 
HETATM 31 C C4 AGS . . . R 3 182.15 169.682 221.274 1 59.11 ? C4 AGS 801 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#