data_7USE # _model_server_result.job_id Am61jBCwsxro6xAJyCInjg _model_server_result.datetime_utc '2024-12-23 05:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7use # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":500}' # _entry.id 7USE # _exptl.entry_id 7USE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F OG1 THR 35 F THR 35 1_555 I MG MG . F MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc2 H O1B GNP . F GNP 500 1_555 I MG MG . F MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc3 G OG1 THR 35 G THR 35 1_555 K MG MG . G MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc4 J O3G GTP . G GTP 500 1_555 K MG MG . G MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc5 J O1B GTP . G GTP 500 1_555 K MG MG . G MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 180 n n PG O2G GTP sing 181 n n PG O3G GTP sing 182 n n PG O3B GTP sing 183 n n O2G HOG2 GTP sing 184 n n O3G HOG3 GTP sing 185 n n O3B PB GTP sing 186 n n PB O1B GTP doub 187 n n PB O2B GTP sing 188 n n PB O3A GTP sing 189 n n O2B HOB2 GTP sing 190 n n O3A PA GTP sing 191 n n PA O1A GTP doub 192 n n PA O2A GTP sing 193 n n PA O5' GTP sing 194 n n O2A HOA2 GTP sing 195 n n O5' C5' GTP sing 196 n n C5' C4' GTP sing 197 n n C5' H5' GTP sing 198 n n C5' "H5''" GTP sing 199 n n C4' O4' GTP sing 200 n n C4' C3' GTP sing 201 n n C4' H4' GTP sing 202 n n O4' C1' GTP sing 203 n n C3' O3' GTP sing 204 n n C3' C2' GTP sing 205 n n C3' H3' GTP sing 206 n n O3' HO3' GTP sing 207 n n C2' O2' GTP sing 208 n n C2' C1' GTP sing 209 n n C2' H2' GTP sing 210 n n O2' HO2' GTP sing 211 n n C1' N9 GTP sing 212 n n C1' H1' GTP sing 213 n n N9 C8 GTP sing 214 n y N9 C4 GTP sing 215 n y C8 N7 GTP doub 216 n y C8 H8 GTP sing 217 n n N7 C5 GTP sing 218 n y C5 C6 GTP sing 219 n n C5 C4 GTP doub 220 n y C6 O6 GTP doub 221 n n C6 N1 GTP sing 222 n n N1 C2 GTP sing 223 n n N1 HN1 GTP sing 224 n n C2 N2 GTP sing 225 n n C2 N3 GTP doub 226 n n N2 HN21 GTP sing 227 n n N2 HN22 GTP sing 228 n n N3 C4 GTP sing 229 n n # _atom_sites.entry_id 7USE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 8 GNP F 1 500 500 GNP GNP . I 9 MG F 1 501 501 MG MG . J 10 GTP G 1 500 500 GTP GTP . K 9 MG G 1 501 501 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . J 10 63.69 159.405 174.152 1 15.42 ? PG GTP 500 G 1 HETATM 2 O O1G GTP . . . J 10 62.193 159.319 174.05 1 17.03 ? O1G GTP 500 G 1 HETATM 3 O O2G GTP . . . J 10 64.145 160.411 175.166 1 16.2 ? O2G GTP 500 G 1 HETATM 4 O O3G GTP . . . J 10 64.332 158.06 174.349 1 17.56 ? O3G GTP 500 G 1 HETATM 5 O O3B GTP . . . J 10 64.193 159.975 172.729 1 12.21 ? O3B GTP 500 G 1 HETATM 6 P PB GTP . . . J 10 64.979 159.367 171.473 1 13.79 ? PB GTP 500 G 1 HETATM 7 O O1B GTP . . . J 10 65.779 158.188 171.925 1 14.48 ? O1B GTP 500 G 1 HETATM 8 O O2B GTP . . . J 10 65.659 160.492 170.774 1 12.94 ? O2B GTP 500 G 1 HETATM 9 O O3A GTP . . . J 10 63.775 158.851 170.55 1 15.1 ? O3A GTP 500 G 1 HETATM 10 P PA GTP . . . J 10 63.577 157.526 169.669 1 17.26 ? PA GTP 500 G 1 HETATM 11 O O1A GTP . . . J 10 63.603 156.346 170.58 1 19.01 ? O1A GTP 500 G 1 HETATM 12 O O2A GTP . . . J 10 64.538 157.567 168.532 1 15.02 ? O2A GTP 500 G 1 HETATM 13 O O5' GTP . . . J 10 62.086 157.716 169.105 1 18.77 ? O5' GTP 500 G 1 HETATM 14 C C5' GTP . . . J 10 61.039 156.844 169.604 1 21.95 ? C5' GTP 500 G 1 HETATM 15 C C4' GTP . . . J 10 60.411 156.086 168.458 1 24 ? C4' GTP 500 G 1 HETATM 16 O O4' GTP . . . J 10 60.404 156.919 167.275 1 24.19 ? O4' GTP 500 G 1 HETATM 17 C C3' GTP . . . J 10 61.142 154.819 168.007 1 27.71 ? C3' GTP 500 G 1 HETATM 18 O O3' GTP . . . J 10 60.749 153.694 168.784 1 33.28 ? O3' GTP 500 G 1 HETATM 19 C C2' GTP . . . J 10 60.69 154.675 166.55 1 35.25 ? C2' GTP 500 G 1 HETATM 20 O O2' GTP . . . J 10 59.572 153.827 166.413 1 39.84 ? O2' GTP 500 G 1 HETATM 21 C C1' GTP . . . J 10 60.374 156.109 166.125 1 25.81 ? C1' GTP 500 G 1 HETATM 22 N N9 GTP . . . J 10 61.309 156.666 165.159 1 25.84 ? N9 GTP 500 G 1 HETATM 23 C C8 GTP . . . J 10 62.591 157.081 165.409 1 24.13 ? C8 GTP 500 G 1 HETATM 24 N N7 GTP . . . J 10 63.2 157.55 164.349 1 25.62 ? N7 GTP 500 G 1 HETATM 25 C C5 GTP . . . J 10 62.256 157.442 163.337 1 34.05 ? C5 GTP 500 G 1 HETATM 26 C C6 GTP . . . J 10 62.345 157.797 161.969 1 43.35 ? C6 GTP 500 G 1 HETATM 27 O O6 GTP . . . J 10 63.307 158.293 161.369 1 46.38 ? O6 GTP 500 G 1 HETATM 28 N N1 GTP . . . J 10 61.159 157.521 161.292 1 38.9 ? N1 GTP 500 G 1 HETATM 29 C C2 GTP . . . J 10 60.034 156.975 161.856 1 33.38 ? C2 GTP 500 G 1 HETATM 30 N N2 GTP . . . J 10 58.99 156.783 161.04 1 57.16 ? N2 GTP 500 G 1 HETATM 31 N N3 GTP . . . J 10 59.944 156.639 163.143 1 33.8 ? N3 GTP 500 G 1 HETATM 32 C C4 GTP . . . J 10 61.087 156.9 163.822 1 25.56 ? C4 GTP 500 G 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #