data_7USY # _model_server_result.job_id t7O4hlKAeVWxXUywancuNw _model_server_result.datetime_utc '2024-10-15 11:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7usy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1303}' # _entry.id 7USY # _exptl.entry_id 7USY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 744.034 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7USY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7USY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 667 A CYS 667 1_555 A SG CYS 816 A CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 667 B CYS 667 1_555 B SG CYS 816 B CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D SG CYS 43 D CYS 43 1_555 U C1 PLM . D PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? covale ? covale2 D SG CYS 44 D CYS 44 1_555 T C1 PLM . D PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? covale ? covale3 F SG CYS 43 F CYS 43 1_555 Y C1 PLM . F PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale4 F SG CYS 44 F CYS 44 1_555 X C1 PLM . F PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc1 A OD1 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A OD2 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 B OD1 ASP 683 B ASP 683 1_555 N CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc4 B OD1 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc5 B OD2 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C OD1 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 C OD2 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 C OD1 ASP 134 C ASP 134 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 C O LEU 136 C LEU 136 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 C OD2 ASP 141 C ASP 141 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 C O SER 177 C SER 177 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc12 C OE1 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C OE2 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc14 E OD1 ASP 132 E ASP 132 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 E O LEU 136 E LEU 136 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 E O SER 177 E SER 177 1_555 W CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? # _chem_comp.formula 'C41 H78 N O8 P' _chem_comp.formula_weight 744.034 _chem_comp.id PEE _chem_comp.mon_nstd_flag n _chem_comp.name 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 7USY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CA A 1 1301 1301 CA CA . I 5 CA A 1 1302 1302 CA CA . J 6 PEE A 1 1303 1303 PEE PEE . K 7 3PE A 1 1304 1304 3PE 3PE . L 8 NAG A 1 1305 1305 NAG NAG . M 5 CA B 1 1301 1301 CA CA . N 5 CA B 1 1302 1302 CA CA . O 6 PEE B 1 1303 1303 PEE PEE . P 7 3PE B 1 1304 1304 3PE 3PE . Q 8 NAG B 1 1305 1305 NAG NAG . R 5 CA C 1 301 301 CA CA . S 5 CA C 1 302 302 CA CA . T 9 PLM D 1 201 201 PLM PLM . U 9 PLM D 1 202 202 PLM PLM . V 5 CA E 1 301 301 CA CA . W 5 CA E 1 302 302 CA CA . X 9 PLM F 1 201 201 PLM PLM . Y 9 PLM F 1 202 202 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C23 PEE . . . O 6 188.518 187.875 167.646 1 3.4 ? C23 PEE 1303 B 1 HETATM 2 C C22 PEE . . . O 6 189.674 188.747 167.161 1 7.84 ? C22 PEE 1303 B 1 HETATM 3 C C21 PEE . . . O 6 190.181 188.224 165.818 1 0.25 ? C21 PEE 1303 B 1 HETATM 4 C C20 PEE . . . O 6 190.949 189.332 165.1 1 3.73 ? C20 PEE 1303 B 1 HETATM 5 C C19 PEE . . . O 6 191.087 188.986 163.619 1 3.79 ? C19 PEE 1303 B 1 HETATM 6 C C18 PEE . . . O 6 192.424 188.289 163.374 1 2.3 ? C18 PEE 1303 B 1 HETATM 7 C C17 PEE . . . O 6 193.551 189.126 163.974 1 7.92 ? C17 PEE 1303 B 1 HETATM 8 C C16 PEE . . . O 6 194.059 190.123 162.934 1 0.84 ? C16 PEE 1303 B 1 HETATM 9 C C15 PEE . . . O 6 195.38 190.738 163.395 1 9.93 ? C15 PEE 1303 B 1 HETATM 10 C C14 PEE . . . O 6 196.324 189.648 163.899 1 1.37 ? C14 PEE 1303 B 1 HETATM 11 C C13 PEE . . . O 6 196.966 188.933 162.713 1 7.45 ? C13 PEE 1303 B 1 HETATM 12 C C12 PEE . . . O 6 196.786 187.427 162.884 1 3.86 ? C12 PEE 1303 B 1 HETATM 13 C C11 PEE . . . O 6 196.556 186.78 161.521 1 6.04 ? C11 PEE 1303 B 1 HETATM 14 C C10 PEE . . . O 6 196.024 185.366 161.732 1 7.95 ? C10 PEE 1303 B 1 HETATM 15 O O4 PEE . . . O 6 195.329 185.137 162.662 1 0.2 ? O4 PEE 1303 B 1 HETATM 16 O O2 PEE . . . O 6 196.35 184.343 160.835 1 0.15 ? O2 PEE 1303 B 1 HETATM 17 C C2 PEE . . . O 6 195.931 183.077 161.257 1 1.46 ? C2 PEE 1303 B 1 HETATM 18 C C1 PEE . . . O 6 195.143 182.397 160.137 1 5.01 ? C1 PEE 1303 B 1 HETATM 19 O O3P PEE . . . O 6 195.671 181.131 159.864 1 2.64 ? O3P PEE 1303 B 1 HETATM 20 P P PEE . . . O 6 195.087 180.297 158.567 1 4.73 ? P PEE 1303 B 1 HETATM 21 O O2P PEE . . . O 6 196.028 179.174 158.212 1 8.12 ? O2P PEE 1303 B 1 HETATM 22 O O1P PEE . . . O 6 193.732 179.725 158.898 1 1.96 ? O1P PEE 1303 B 1 HETATM 23 O O4P PEE . . . O 6 194.949 181.314 157.279 1 0.31 ? O4P PEE 1303 B 1 HETATM 24 C C4 PEE . . . O 6 195.962 181.314 156.315 1 6.75 ? C4 PEE 1303 B 1 HETATM 25 C C5 PEE . . . O 6 195.965 182.653 155.58 1 0.5 ? C5 PEE 1303 B 1 HETATM 26 N N PEE . . . O 6 197.301 182.935 155.086 1 2.71 ? N PEE 1303 B 1 HETATM 27 C C3 PEE . . . O 6 197.159 182.256 161.64 1 3.46 ? C3 PEE 1303 B 1 HETATM 28 O O3 PEE . . . O 6 198.266 183.109 161.716 1 3.35 ? O3 PEE 1303 B 1 HETATM 29 C C30 PEE . . . O 6 199.036 182.979 162.878 1 6.57 ? C30 PEE 1303 B 1 HETATM 30 O O5 PEE . . . O 6 199.773 182.064 163.005 1 0.87 ? O5 PEE 1303 B 1 HETATM 31 C C31 PEE . . . O 6 198.942 184.021 163.987 1 9.8 ? C31 PEE 1303 B 1 HETATM 32 C C32 PEE . . . O 6 200.338 184.282 164.548 1 4.97 ? C32 PEE 1303 B 1 HETATM 33 C C33 PEE . . . O 6 200.329 185.61 165.298 1 4 ? C33 PEE 1303 B 1 HETATM 34 C C34 PEE . . . O 6 201.761 186.093 165.512 1 1.16 ? C34 PEE 1303 B 1 HETATM 35 C C35 PEE . . . O 6 201.756 187.603 165.743 1 2.14 ? C35 PEE 1303 B 1 HETATM 36 C C36 PEE . . . O 6 203.112 188.056 166.283 1 3.16 ? C36 PEE 1303 B 1 HETATM 37 C C37 PEE . . . O 6 204.236 187.497 165.414 1 7.82 ? C37 PEE 1303 B 1 HETATM 38 C C38 PEE . . . O 6 204.831 188.616 164.562 1 7.93 ? C38 PEE 1303 B 1 HETATM 39 C C39 PEE . . . O 6 206.051 188.089 163.81 1 7.75 ? C39 PEE 1303 B 1 HETATM 40 C C40 PEE . . . O 6 205.595 187.373 162.541 1 0.5 ? C40 PEE 1303 B 1 HETATM 41 C C41 PEE . . . O 6 206.811 187.007 161.693 1 0.55 ? C41 PEE 1303 B 1 HETATM 42 C C42 PEE . . . O 6 206.437 187.058 160.214 1 4.14 ? C42 PEE 1303 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #