data_7USY # _model_server_result.job_id qIOaVJ47PsQQTjg285NJ8A _model_server_result.datetime_utc '2024-10-15 11:21:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7usy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1304}' # _entry.id 7USY # _exptl.entry_id 7USY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 748.065 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Distearoyl-sn-glycerophosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7USY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7USY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 667 A CYS 667 1_555 A SG CYS 816 A CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 667 B CYS 667 1_555 B SG CYS 816 B CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D SG CYS 43 D CYS 43 1_555 U C1 PLM . D PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? covale ? covale2 D SG CYS 44 D CYS 44 1_555 T C1 PLM . D PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? covale ? covale3 F SG CYS 43 F CYS 43 1_555 Y C1 PLM . F PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale4 F SG CYS 44 F CYS 44 1_555 X C1 PLM . F PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc1 A OD1 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A OD2 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 B OD1 ASP 683 B ASP 683 1_555 N CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc4 B OD1 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc5 B OD2 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C OD1 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 C OD2 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 C OD1 ASP 134 C ASP 134 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 C O LEU 136 C LEU 136 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 C OD2 ASP 141 C ASP 141 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 C O SER 177 C SER 177 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc12 C OE1 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C OE2 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc14 E OD1 ASP 132 E ASP 132 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 E O LEU 136 E LEU 136 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 E O SER 177 E SER 177 1_555 W CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? # _chem_comp.formula 'C41 H82 N O8 P' _chem_comp.formula_weight 748.065 _chem_comp.id 3PE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Distearoyl-sn-glycerophosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE;1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE # _atom_sites.entry_id 7USY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CA A 1 1301 1301 CA CA . I 5 CA A 1 1302 1302 CA CA . J 6 PEE A 1 1303 1303 PEE PEE . K 7 3PE A 1 1304 1304 3PE 3PE . L 8 NAG A 1 1305 1305 NAG NAG . M 5 CA B 1 1301 1301 CA CA . N 5 CA B 1 1302 1302 CA CA . O 6 PEE B 1 1303 1303 PEE PEE . P 7 3PE B 1 1304 1304 3PE 3PE . Q 8 NAG B 1 1305 1305 NAG NAG . R 5 CA C 1 301 301 CA CA . S 5 CA C 1 302 302 CA CA . T 9 PLM D 1 201 201 PLM PLM . U 9 PLM D 1 202 202 PLM PLM . V 5 CA E 1 301 301 CA CA . W 5 CA E 1 302 302 CA CA . X 9 PLM F 1 201 201 PLM PLM . Y 9 PLM F 1 202 202 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 3PE . . . K 7 123.284 164.354 161.252 1 9.33 ? P 3PE 1304 A 1 HETATM 2 N N 3PE . . . K 7 121.183 161.259 157.941 1 2.36 ? N 3PE 1304 A 1 HETATM 3 O O11 3PE . . . K 7 122.519 164.988 162.568 1 9.08 ? O11 3PE 1304 A 1 HETATM 4 O O12 3PE . . . K 7 124.069 165.443 160.562 1 3.02 ? O12 3PE 1304 A 1 HETATM 5 O O13 3PE . . . K 7 122.175 163.732 160.205 1 9.45 ? O13 3PE 1304 A 1 HETATM 6 O O14 3PE . . . K 7 124.224 163.257 161.689 1 8.64 ? O14 3PE 1304 A 1 HETATM 7 C C11 3PE . . . K 7 122.533 162.616 159.441 1 7.34 ? C11 3PE 1304 A 1 HETATM 8 C C12 3PE . . . K 7 121.712 162.593 158.153 1 0.79 ? C12 3PE 1304 A 1 HETATM 9 C C1 3PE . . . K 7 122.472 164.237 163.746 1 8.76 ? C1 3PE 1304 A 1 HETATM 10 C C2 3PE . . . K 7 122.296 165.174 164.937 1 8.35 ? C2 3PE 1304 A 1 HETATM 11 C C3 3PE . . . K 7 123.379 164.874 165.973 1 8.03 ? C3 3PE 1304 A 1 HETATM 12 O O31 3PE . . . K 7 123.004 165.362 167.231 1 3.77 ? O31 3PE 1304 A 1 HETATM 13 O O32 3PE . . . K 7 124.827 164.34 168.038 1 1.22 ? O32 3PE 1304 A 1 HETATM 14 C C31 3PE . . . K 7 123.857 164.976 168.272 1 7.17 ? C31 3PE 1304 A 1 HETATM 15 C C32 3PE . . . K 7 123.547 165.372 169.711 1 7 ? C32 3PE 1304 A 1 HETATM 16 C C33 3PE . . . K 7 123.828 166.86 169.898 1 6.79 ? C33 3PE 1304 A 1 HETATM 17 C C34 3PE . . . K 7 123.084 167.368 171.13 1 8.92 ? C34 3PE 1304 A 1 HETATM 18 C C35 3PE . . . K 7 123.567 166.631 172.377 1 8.83 ? C35 3PE 1304 A 1 HETATM 19 C C36 3PE . . . K 7 123.849 167.644 173.485 1 6.25 ? C36 3PE 1304 A 1 HETATM 20 C C37 3PE . . . K 7 123.954 166.915 174.822 1 2.89 ? C37 3PE 1304 A 1 HETATM 21 C C38 3PE . . . K 7 124.901 167.674 175.749 1 4.03 ? C38 3PE 1304 A 1 HETATM 22 C C39 3PE . . . K 7 125.079 166.904 177.057 1 0.29 ? C39 3PE 1304 A 1 HETATM 23 C C3A 3PE . . . K 7 125.285 165.417 176.775 1 9.16 ? C3A 3PE 1304 A 1 HETATM 24 C C3B 3PE . . . K 7 125.011 164.612 178.044 1 6.87 ? C3B 3PE 1304 A 1 HETATM 25 O O21 3PE . . . K 7 122.425 166.491 164.488 1 8.86 ? O21 3PE 1304 A 1 HETATM 26 O O22 3PE . . . K 7 122.477 167.989 166.151 1 0 ? O22 3PE 1304 A 1 HETATM 27 C C21 3PE . . . K 7 121.834 167.45 165.316 1 3.98 ? C21 3PE 1304 A 1 HETATM 28 C C22 3PE . . . K 7 120.363 167.813 165.146 1 3.36 ? C22 3PE 1304 A 1 HETATM 29 C C23 3PE . . . K 7 120.141 169.237 165.648 1 0 ? C23 3PE 1304 A 1 HETATM 30 C C24 3PE . . . K 7 119.625 169.196 167.083 1 2.46 ? C24 3PE 1304 A 1 HETATM 31 C C25 3PE . . . K 7 119.429 170.623 167.585 1 6.88 ? C25 3PE 1304 A 1 HETATM 32 C C26 3PE . . . K 7 120.589 171.006 168.503 1 8.51 ? C26 3PE 1304 A 1 HETATM 33 C C27 3PE . . . K 7 120.693 170.004 169.652 1 2.41 ? C27 3PE 1304 A 1 HETATM 34 C C28 3PE . . . K 7 121.605 170.574 170.736 1 3.71 ? C28 3PE 1304 A 1 HETATM 35 C C29 3PE . . . K 7 120.818 171.551 171.605 1 1.5 ? C29 3PE 1304 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #