data_7USY # _model_server_result.job_id FnZMUTDOVzvC9kdJlNy7gA _model_server_result.datetime_utc '2024-10-15 11:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7usy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1305}' # _entry.id 7USY # _exptl.entry_id 7USY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7USY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7USY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 667 A CYS 667 1_555 A SG CYS 816 A CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 667 B CYS 667 1_555 B SG CYS 816 B CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 D SG CYS 43 D CYS 43 1_555 U C1 PLM . D PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? covale ? covale2 D SG CYS 44 D CYS 44 1_555 T C1 PLM . D PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.647 ? covale ? covale3 F SG CYS 43 F CYS 43 1_555 Y C1 PLM . F PLM 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale4 F SG CYS 44 F CYS 44 1_555 X C1 PLM . F PLM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc1 A OD1 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A OD2 ASP 695 A ASP 695 1_555 H CA CA . A CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 B OD1 ASP 683 B ASP 683 1_555 N CA CA . B CA 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc4 B OD1 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc5 B OD2 ASP 695 B ASP 695 1_555 M CA CA . B CA 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc6 C OD1 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 C OD2 ASP 132 C ASP 132 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc8 C OD1 ASP 134 C ASP 134 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc9 C O LEU 136 C LEU 136 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 C OD2 ASP 141 C ASP 141 1_555 R CA CA . C CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 C O SER 177 C SER 177 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc12 C OE1 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc13 C OE2 GLU 182 C GLU 182 1_555 S CA CA . C CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc14 E OD1 ASP 132 E ASP 132 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc15 E OD1 ASP 134 E ASP 134 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 E O LEU 136 E LEU 136 1_555 V CA CA . E CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 E O SER 177 E SER 177 1_555 W CA CA . E CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.68 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7USY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 CA A 1 1301 1301 CA CA . I 5 CA A 1 1302 1302 CA CA . J 6 PEE A 1 1303 1303 PEE PEE . K 7 3PE A 1 1304 1304 3PE 3PE . L 8 NAG A 1 1305 1305 NAG NAG . M 5 CA B 1 1301 1301 CA CA . N 5 CA B 1 1302 1302 CA CA . O 6 PEE B 1 1303 1303 PEE PEE . P 7 3PE B 1 1304 1304 3PE 3PE . Q 8 NAG B 1 1305 1305 NAG NAG . R 5 CA C 1 301 301 CA CA . S 5 CA C 1 302 302 CA CA . T 9 PLM D 1 201 201 PLM PLM . U 9 PLM D 1 202 202 PLM PLM . V 5 CA E 1 301 301 CA CA . W 5 CA E 1 302 302 CA CA . X 9 PLM F 1 201 201 PLM PLM . Y 9 PLM F 1 202 202 PLM PLM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . Q 8 200.245 191.667 212.467 1 20 ? C1 NAG 1305 B 1 HETATM 2 C C2 NAG . . . Q 8 200.475 192.051 211.009 1 20 ? C2 NAG 1305 B 1 HETATM 3 C C3 NAG . . . Q 8 200.723 190.81 210.166 1 20 ? C3 NAG 1305 B 1 HETATM 4 C C4 NAG . . . Q 8 201.848 189.992 210.778 1 20 ? C4 NAG 1305 B 1 HETATM 5 C C5 NAG . . . Q 8 201.541 189.695 212.239 1 20 ? C5 NAG 1305 B 1 HETATM 6 C C6 NAG . . . Q 8 202.671 188.901 212.881 1 20 ? C6 NAG 1305 B 1 HETATM 7 C C7 NAG . . . Q 8 199.204 194.088 210.684 1 20 ? C7 NAG 1305 B 1 HETATM 8 C C8 NAG . . . Q 8 197.798 194.585 210.841 1 20 ? C8 NAG 1305 B 1 HETATM 9 N N2 NAG . . . Q 8 199.333 192.779 210.493 1 20 ? N2 NAG 1305 B 1 HETATM 10 O O1 NAG . . . Q 8 200.095 192.851 213.258 1 20 ? O1 NAG 1305 B 1 HETATM 11 O O4 NAG . . . Q 8 201.996 188.763 210.059 1 20 ? O4 NAG 1305 B 1 HETATM 12 O O5 NAG . . . Q 8 201.361 190.92 212.948 1 20 ? O5 NAG 1305 B 1 HETATM 13 O O6 NAG . . . Q 8 202.296 188.534 214.213 1 20 ? O6 NAG 1305 B 1 HETATM 14 O O7 NAG . . . Q 8 200.168 194.834 210.731 1 20 ? O7 NAG 1305 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #