data_7UT9 # _model_server_result.job_id H-8NGb9BjKpQChUhB7Grbw _model_server_result.datetime_utc '2025-07-14 16:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ut9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":302}' # _entry.id 7UT9 # _exptl.entry_id 7UT9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UT9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 62 A CYS 62 1_555 I FE3 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc2 A SG CYS 88 A CYS 88 1_555 I FE4 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc3 A SG CYS 88 A CYS 88 1_555 I FE5 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A SG CYS 154 A CYS 154 1_555 I FE1 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc5 A SG CYS 275 A CYS 275 1_555 H FE1 ICS . A ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 B SG CYS 70 B CYS 70 1_555 I FE7 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc7 B SG CYS 95 B CYS 95 1_555 I FE2 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc8 B SG CYS 95 B CYS 95 1_555 I FE8 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc9 B O ARG 108 B ARG 108 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 B OE1 GLU 109 B GLU 109 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc11 B SG CYS 153 B CYS 153 1_555 I FE6 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc12 B OD2 ASP 353 B ASP 353 1_555 J FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 B OD2 ASP 357 B ASP 357 1_555 J FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc14 J FE FE . B FE 602 1_555 D O ARG 108 D ARG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc15 J FE FE . B FE 602 1_555 D OE1 GLU 109 D GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc16 C SG CYS 62 C CYS 62 1_555 N FE3 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc17 C SG CYS 88 C CYS 88 1_555 N FE5 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc18 C SG CYS 88 C CYS 88 1_555 N FE4 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc19 C SG CYS 154 C CYS 154 1_555 N FE1 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc20 C SG CYS 275 C CYS 275 1_555 L FE1 ICS . C ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc21 D SG CYS 70 D CYS 70 1_555 N FE7 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc22 D SG CYS 95 D CYS 95 1_555 N FE8 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc23 D SG CYS 95 D CYS 95 1_555 N FE2 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc24 D SG CYS 153 D CYS 153 1_555 N FE6 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc25 D OD2 ASP 353 D ASP 353 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc26 D OD2 ASP 357 D ASP 357 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc27 E OG SER 17 E SER 16 1_555 O MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? metalc ? metalc28 E OD2 ASP 40 E ASP 39 1_555 O MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc29 E SG CYS 98 E CYS 97 1_555 Q FE1 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc30 E SG CYS 133 E CYS 132 1_555 Q FE2 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc31 O MG MG . E MG 301 1_555 P O2B ADP . E ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc32 F OG SER 17 F SER 16 1_555 R MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc33 F SG CYS 98 F CYS 97 1_555 Q FE3 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc34 F SG CYS 133 F CYS 132 1_555 Q FE4 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc35 R MG MG . F MG 302 1_555 S O1B ATP . F ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc36 R MG MG . F MG 302 1_555 S O3G ATP . F ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 7UT9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 HCA A 1 501 1494 HCA HCA . H 5 ICS A 1 502 1496 ICS ICS . I 6 CLF B 1 601 1498 CLF CLF . J 7 FE B 1 602 1492 FE FE . K 4 HCA C 1 501 1494 HCA HCA . L 5 ICS C 1 502 1496 ICS ICS . M 7 FE D 1 601 1492 FE FE . N 6 CLF D 1 602 1498 CLF CLF . O 8 MG E 1 301 1291 MG MG . P 9 ADP E 1 302 1292 ADP ADP . Q 10 SF4 F 1 301 1290 SF4 SF4 . R 8 MG F 1 302 1291 MG MG . S 11 ATP F 1 303 1292 ATP ATP . T 12 HOH A 1 601 25 HOH HOH . T 12 HOH A 2 602 16 HOH HOH . T 12 HOH A 3 603 40 HOH HOH . T 12 HOH A 4 604 18 HOH HOH . T 12 HOH A 5 605 35 HOH HOH . T 12 HOH A 6 606 47 HOH HOH . T 12 HOH A 7 607 60 HOH HOH . T 12 HOH A 8 608 42 HOH HOH . T 12 HOH A 9 609 24 HOH HOH . T 12 HOH A 10 610 22 HOH HOH . T 12 HOH A 11 611 19 HOH HOH . T 12 HOH A 12 612 7 HOH HOH . T 12 HOH A 13 613 49 HOH HOH . U 12 HOH B 1 701 2 HOH HOH . U 12 HOH B 2 702 31 HOH HOH . U 12 HOH B 3 703 37 HOH HOH . U 12 HOH B 4 704 21 HOH HOH . U 12 HOH B 5 705 1 HOH HOH . U 12 HOH B 6 706 43 HOH HOH . U 12 HOH B 7 707 44 HOH HOH . U 12 HOH B 8 708 10 HOH HOH . U 12 HOH B 9 709 50 HOH HOH . U 12 HOH B 10 710 15 HOH HOH . U 12 HOH B 11 711 3 HOH HOH . U 12 HOH B 12 712 51 HOH HOH . U 12 HOH B 13 713 20 HOH HOH . U 12 HOH B 14 714 27 HOH HOH . U 12 HOH B 15 715 13 HOH HOH . U 12 HOH B 16 716 17 HOH HOH . U 12 HOH B 17 717 28 HOH HOH . U 12 HOH B 18 718 30 HOH HOH . U 12 HOH B 19 719 46 HOH HOH . U 12 HOH B 20 720 29 HOH HOH . V 12 HOH C 1 601 12 HOH HOH . V 12 HOH C 2 602 58 HOH HOH . V 12 HOH C 3 603 8 HOH HOH . V 12 HOH C 4 604 52 HOH HOH . V 12 HOH C 5 605 38 HOH HOH . V 12 HOH C 6 606 54 HOH HOH . V 12 HOH C 7 607 45 HOH HOH . V 12 HOH C 8 608 41 HOH HOH . V 12 HOH C 9 609 14 HOH HOH . V 12 HOH C 10 610 23 HOH HOH . V 12 HOH C 11 611 53 HOH HOH . W 12 HOH D 1 701 36 HOH HOH . W 12 HOH D 2 702 39 HOH HOH . W 12 HOH D 3 703 4 HOH HOH . W 12 HOH D 4 704 34 HOH HOH . W 12 HOH D 5 705 33 HOH HOH . W 12 HOH D 6 706 5 HOH HOH . W 12 HOH D 7 707 55 HOH HOH . W 12 HOH D 8 708 32 HOH HOH . X 12 HOH E 1 401 9 HOH HOH . X 12 HOH E 2 402 56 HOH HOH . X 12 HOH E 3 403 26 HOH HOH . Y 12 HOH F 1 401 57 HOH HOH . Y 12 HOH F 2 402 48 HOH HOH . Y 12 HOH F 3 403 11 HOH HOH . Y 12 HOH F 4 404 6 HOH HOH . Y 12 HOH F 5 405 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . P 9 192.838 95.849 166.002 1 49.46 ? PB ADP 302 E 1 HETATM 2 O O1B ADP . . . P 9 192.762 96.898 164.93 1 54.07 ? O1B ADP 302 E 1 HETATM 3 O O2B ADP . . . P 9 191.516 95.599 166.667 1 47.45 ? O2B ADP 302 E 1 HETATM 4 O O3B ADP . . . P 9 193.957 96.093 166.979 1 56.69 ? O3B ADP 302 E 1 HETATM 5 P PA ADP . . . P 9 192.791 92.977 165.579 1 43.9 ? PA ADP 302 E 1 HETATM 6 O O1A ADP . . . P 9 191.854 92.498 164.523 1 55.98 ? O1A ADP 302 E 1 HETATM 7 O O2A ADP . . . P 9 192.34 92.915 166.998 1 57.17 ? O2A ADP 302 E 1 HETATM 8 O O3A ADP . . . P 9 193.204 94.48 165.251 1 51.66 ? O3A ADP 302 E 1 HETATM 9 O O5' ADP . . . P 9 194.181 92.199 165.435 1 51.53 ? O5' ADP 302 E 1 HETATM 10 C C5' ADP . . . P 9 194.967 92.39 164.234 1 53.01 ? C5' ADP 302 E 1 HETATM 11 C C4' ADP . . . P 9 195.489 91.057 163.755 1 47.68 ? C4' ADP 302 E 1 HETATM 12 O O4' ADP . . . P 9 196.426 90.528 164.728 1 52.09 ? O4' ADP 302 E 1 HETATM 13 C C3' ADP . . . P 9 194.439 89.958 163.542 1 51.51 ? C3' ADP 302 E 1 HETATM 14 O O3' ADP . . . P 9 194.636 89.312 162.292 1 57.26 ? O3' ADP 302 E 1 HETATM 15 C C2' ADP . . . P 9 194.665 89.005 164.719 1 54.03 ? C2' ADP 302 E 1 HETATM 16 O O2' ADP . . . P 9 194.34 87.666 164.417 1 58.26 ? O2' ADP 302 E 1 HETATM 17 C C1' ADP . . . P 9 196.159 89.167 164.962 1 56.8 ? C1' ADP 302 E 1 HETATM 18 N N9 ADP . . . P 9 196.57 88.844 166.322 1 55.12 ? N9 ADP 302 E 1 HETATM 19 C C8 ADP . . . P 9 195.964 89.262 167.479 1 57.58 ? C8 ADP 302 E 1 HETATM 20 N N7 ADP . . . P 9 196.551 88.822 168.563 1 54.61 ? N7 ADP 302 E 1 HETATM 21 C C5 ADP . . . P 9 197.621 88.075 168.094 1 52.2 ? C5 ADP 302 E 1 HETATM 22 C C6 ADP . . . P 9 198.631 87.354 168.756 1 59.59 ? C6 ADP 302 E 1 HETATM 23 N N6 ADP . . . P 9 198.728 87.265 170.079 1 59.63 ? N6 ADP 302 E 1 HETATM 24 N N1 ADP . . . P 9 199.55 86.721 167.989 1 62.92 ? N1 ADP 302 E 1 HETATM 25 C C2 ADP . . . P 9 199.446 86.817 166.658 1 61.05 ? C2 ADP 302 E 1 HETATM 26 N N3 ADP . . . P 9 198.542 87.465 165.93 1 55.89 ? N3 ADP 302 E 1 HETATM 27 C C4 ADP . . . P 9 197.644 88.082 166.714 1 52.31 ? C4 ADP 302 E 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #