data_7UT9
#
_model_server_result.job_id            3XNLcqlSwS9TW8dU2w5Liw 
_model_server_result.datetime_utc      '2025-07-13 12:20:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ut9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":602}' 
#
_entry.id    7UT9 
#
_exptl.entry_id    7UT9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              671.215 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE(8)-S(7) CLUSTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7UT9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7UT9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 I N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 62 A CYS 62 1_555 I FE3 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc2 A SG CYS 88 A CYS 88 1_555 I FE4 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc3 A SG CYS 88 A CYS 88 1_555 I FE5 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc4 A SG CYS 154 A CYS 154 1_555 I FE1 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc5 A SG CYS 275 A CYS 275 1_555 H FE1 ICS . A ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc6 B SG CYS 70 B CYS 70 1_555 I FE7 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc7 B SG CYS 95 B CYS 95 1_555 I FE2 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc8 B SG CYS 95 B CYS 95 1_555 I FE8 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc9 B O ARG 108 B ARG 108 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc10 B OE1 GLU 109 B GLU 109 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc11 B SG CYS 153 B CYS 153 1_555 I FE6 CLF . B CLF 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc12 B OD2 ASP 353 B ASP 353 1_555 J FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc13 B OD2 ASP 357 B ASP 357 1_555 J FE FE . B FE 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc14 J FE FE . B FE 602 1_555 D O ARG 108 D ARG 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc15 J FE FE . B FE 602 1_555 D OE1 GLU 109 D GLU 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc16 C SG CYS 62 C CYS 62 1_555 N FE3 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc17 C SG CYS 88 C CYS 88 1_555 N FE5 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc18 C SG CYS 88 C CYS 88 1_555 N FE4 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc19 C SG CYS 154 C CYS 154 1_555 N FE1 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
metalc ? metalc20 C SG CYS 275 C CYS 275 1_555 L FE1 ICS . C ICS 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc21 D SG CYS 70 D CYS 70 1_555 N FE7 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? 
metalc ? metalc22 D SG CYS 95 D CYS 95 1_555 N FE8 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc23 D SG CYS 95 D CYS 95 1_555 N FE2 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc24 D SG CYS 153 D CYS 153 1_555 N FE6 CLF . D CLF 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? 
metalc ? metalc25 D OD2 ASP 353 D ASP 353 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc26 D OD2 ASP 357 D ASP 357 1_555 M FE FE . D FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc27 E OG SER 17 E SER 16 1_555 O MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.224 ? 
metalc ? metalc28 E OD2 ASP 40 E ASP 39 1_555 O MG MG . E MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc29 E SG CYS 98 E CYS 97 1_555 Q FE1 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc30 E SG CYS 133 E CYS 132 1_555 Q FE2 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc31 O MG MG . E MG 301 1_555 P O2B ADP . E ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc32 F OG SER 17 F SER 16 1_555 R MG MG . F MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc33 F SG CYS 98 F CYS 97 1_555 Q FE3 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc34 F SG CYS 133 F CYS 132 1_555 Q FE4 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc35 R MG MG . F MG 302 1_555 S O1B ATP . F ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc36 R MG MG . F MG 302 1_555 S O3G ATP . F ATP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? 
#
_chem_comp.formula           'Fe8 S7' 
_chem_comp.formula_weight    671.215 
_chem_comp.id                CLF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE(8)-S(7) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 CLF sing 163 n n 
FE1 S2A CLF sing 164 n n 
FE1 S3A CLF sing 165 n n 
FE2 S1 CLF sing 166 n n 
FE2 S2A CLF sing 167 n n 
FE2 S4A CLF sing 168 n n 
FE3 S2A CLF sing 169 n n 
FE3 S4A CLF sing 170 n n 
FE3 S3A CLF sing 171 n n 
FE4 S1 CLF sing 172 n n 
FE4 S4A CLF sing 173 n n 
FE4 S3A CLF sing 174 n n 
S1 FE5 CLF sing 175 n n 
S1 FE6 CLF sing 176 n n 
S1 FE8 CLF sing 177 n n 
FE5 S2B CLF sing 178 n n 
FE5 S4B CLF sing 179 n n 
FE6 S2B CLF sing 180 n n 
FE6 S3B CLF sing 181 n n 
FE7 S2B CLF sing 182 n n 
FE7 S3B CLF sing 183 n n 
FE7 S4B CLF sing 184 n n 
FE8 S3B CLF sing 185 n n 
FE8 S4B CLF sing 186 n n 
#
_atom_sites.entry_id                     7UT9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 HCA A 1 501 1494 HCA HCA . 
H 5 ICS A 1 502 1496 ICS ICS . 
I 6 CLF B 1 601 1498 CLF CLF . 
J 7 FE B 1 602 1492 FE FE . 
K 4 HCA C 1 501 1494 HCA HCA . 
L 5 ICS C 1 502 1496 ICS ICS . 
M 7 FE D 1 601 1492 FE FE . 
N 6 CLF D 1 602 1498 CLF CLF . 
O 8 MG E 1 301 1291 MG MG . 
P 9 ADP E 1 302 1292 ADP ADP . 
Q 10 SF4 F 1 301 1290 SF4 SF4 . 
R 8 MG F 1 302 1291 MG MG . 
S 11 ATP F 1 303 1292 ATP ATP . 
T 12 HOH A 1 601 25 HOH HOH . 
T 12 HOH A 2 602 16 HOH HOH . 
T 12 HOH A 3 603 40 HOH HOH . 
T 12 HOH A 4 604 18 HOH HOH . 
T 12 HOH A 5 605 35 HOH HOH . 
T 12 HOH A 6 606 47 HOH HOH . 
T 12 HOH A 7 607 60 HOH HOH . 
T 12 HOH A 8 608 42 HOH HOH . 
T 12 HOH A 9 609 24 HOH HOH . 
T 12 HOH A 10 610 22 HOH HOH . 
T 12 HOH A 11 611 19 HOH HOH . 
T 12 HOH A 12 612 7 HOH HOH . 
T 12 HOH A 13 613 49 HOH HOH . 
U 12 HOH B 1 701 2 HOH HOH . 
U 12 HOH B 2 702 31 HOH HOH . 
U 12 HOH B 3 703 37 HOH HOH . 
U 12 HOH B 4 704 21 HOH HOH . 
U 12 HOH B 5 705 1 HOH HOH . 
U 12 HOH B 6 706 43 HOH HOH . 
U 12 HOH B 7 707 44 HOH HOH . 
U 12 HOH B 8 708 10 HOH HOH . 
U 12 HOH B 9 709 50 HOH HOH . 
U 12 HOH B 10 710 15 HOH HOH . 
U 12 HOH B 11 711 3 HOH HOH . 
U 12 HOH B 12 712 51 HOH HOH . 
U 12 HOH B 13 713 20 HOH HOH . 
U 12 HOH B 14 714 27 HOH HOH . 
U 12 HOH B 15 715 13 HOH HOH . 
U 12 HOH B 16 716 17 HOH HOH . 
U 12 HOH B 17 717 28 HOH HOH . 
U 12 HOH B 18 718 30 HOH HOH . 
U 12 HOH B 19 719 46 HOH HOH . 
U 12 HOH B 20 720 29 HOH HOH . 
V 12 HOH C 1 601 12 HOH HOH . 
V 12 HOH C 2 602 58 HOH HOH . 
V 12 HOH C 3 603 8 HOH HOH . 
V 12 HOH C 4 604 52 HOH HOH . 
V 12 HOH C 5 605 38 HOH HOH . 
V 12 HOH C 6 606 54 HOH HOH . 
V 12 HOH C 7 607 45 HOH HOH . 
V 12 HOH C 8 608 41 HOH HOH . 
V 12 HOH C 9 609 14 HOH HOH . 
V 12 HOH C 10 610 23 HOH HOH . 
V 12 HOH C 11 611 53 HOH HOH . 
W 12 HOH D 1 701 36 HOH HOH . 
W 12 HOH D 2 702 39 HOH HOH . 
W 12 HOH D 3 703 4 HOH HOH . 
W 12 HOH D 4 704 34 HOH HOH . 
W 12 HOH D 5 705 33 HOH HOH . 
W 12 HOH D 6 706 5 HOH HOH . 
W 12 HOH D 7 707 55 HOH HOH . 
W 12 HOH D 8 708 32 HOH HOH . 
X 12 HOH E 1 401 9 HOH HOH . 
X 12 HOH E 2 402 56 HOH HOH . 
X 12 HOH E 3 403 26 HOH HOH . 
Y 12 HOH F 1 401 57 HOH HOH . 
Y 12 HOH F 2 402 48 HOH HOH . 
Y 12 HOH F 3 403 11 HOH HOH . 
Y 12 HOH F 4 404 6 HOH HOH . 
Y 12 HOH F 5 405 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 CLF . . . N 6 149.426 195.583 154.854 1 56.32 ? FE1 CLF 602 D 1 
HETATM 2 FE FE2 CLF . . . N 6 150.893 193.629 154.24 1 74.75 ? FE2 CLF 602 D 1 
HETATM 3 FE FE3 CLF . . . N 6 151.638 195.043 156.473 1 56.32 ? FE3 CLF 602 D 1 
HETATM 4 FE FE4 CLF . . . N 6 149.457 193.427 156.357 1 52.17 ? FE4 CLF 602 D 1 
HETATM 5 S S1 CLF . . . N 6 148.417 193.51 154.235 1 44.45 ? S1 CLF 602 D 1 
HETATM 6 S S2A CLF . . . N 6 151.66 195.79 154.307 1 27.22 ? S2A CLF 602 D 1 
HETATM 7 S S4A CLF . . . N 6 151.649 192.792 156.218 1 49.06 ? S4A CLF 602 D 1 
HETATM 8 S S3A CLF . . . N 6 149.496 195.576 157.164 1 36.35 ? S3A CLF 602 D 1 
HETATM 9 FE FE5 CLF . . . N 6 148.152 191.11 155.116 1 59.49 ? FE5 CLF 602 D 1 
HETATM 10 FE FE6 CLF . . . N 6 146.837 191.836 153.116 1 60.96 ? FE6 CLF 602 D 1 
HETATM 11 FE FE7 CLF . . . N 6 147.922 189.203 153.094 1 43.15 ? FE7 CLF 602 D 1 
HETATM 12 FE FE8 CLF . . . N 6 149.127 191.668 152.969 1 20.85 ? FE8 CLF 602 D 1 
HETATM 13 S S2B CLF . . . N 6 146.194 189.767 154.517 1 33.63 ? S2B CLF 602 D 1 
HETATM 14 S S3B CLF . . . N 6 147.829 190.726 151.345 1 30.32 ? S3B CLF 602 D 1 
HETATM 15 S S4B CLF . . . N 6 149.775 189.854 154.27 1 44.96 ? S4B CLF 602 D 1 
#
_model_server_stats.io_time_ms              81 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           15 
#