data_7UUN # _model_server_result.job_id 3Tl3xuhq_J1DW4Ew8qv50Q _model_server_result.datetime_utc '2024-11-24 07:53:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uun # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7UUN # _exptl.entry_id 7UUN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 614.644 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NEOMYCIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UUN _cell.length_a 133.564 _cell.length_b 133.564 _cell.length_c 133.564 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UUN _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall 'P 4acd 2ab 3' _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H46 N6 O13' _chem_comp.formula_weight 614.644 _chem_comp.id NMY _chem_comp.mon_nstd_flag . _chem_comp.name NEOMYCIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYCIFRADIN;NEOMAS;PIMAVECORT;VONAMYCIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O5 NMY sing 246 n n C1 O1 NMY sing 247 n n C1 C2 NMY sing 248 n n C1 H1 NMY sing 249 n n O1 C10 NMY sing 250 n n C2 N2 NMY sing 251 n n C2 C3 NMY sing 252 n n C2 H2 NMY sing 253 n n N2 HN21 NMY sing 254 n n N2 HN22 NMY sing 255 n n C3 C4 NMY sing 256 n n C3 O3 NMY sing 257 n n C3 H3 NMY sing 258 n n O3 HO3 NMY sing 259 n n C4 C5 NMY sing 260 n n C4 O4 NMY sing 261 n n C4 H4 NMY sing 262 n n O4 HO4 NMY sing 263 n n C5 O5 NMY sing 264 n n C5 C6 NMY sing 265 n n C5 H5 NMY sing 266 n n C6 N6 NMY sing 267 n n C6 H61 NMY sing 268 n n C6 H62 NMY sing 269 n n C7 N7 NMY sing 270 n n C7 C12 NMY sing 271 n n C7 C8 NMY sing 272 n n C7 H7 NMY sing 273 n n N7 H71 NMY sing 274 n n N7 H72 NMY sing 275 n n C12 O12 NMY sing 276 n n C12 C11 NMY sing 277 n n C12 H12 NMY sing 278 n n C11 O11 NMY sing 279 n n C11 C10 NMY sing 280 n n C11 H11 NMY sing 281 n n O11 C13 NMY sing 282 n n C10 C9 NMY sing 283 n n C10 H10 NMY sing 284 n n C9 C8 NMY sing 285 n n C9 N9 NMY sing 286 n n C9 H9 NMY sing 287 n n N9 H91 NMY sing 288 n n N9 H92 NMY sing 289 n n C8 H81 NMY sing 290 n n C8 H82 NMY sing 291 n n C13 C14 NMY sing 292 n n C13 O16 NMY sing 293 n n C13 H13 NMY sing 294 n n C14 O14 NMY sing 295 n n C14 C15 NMY sing 296 n n C14 H14 NMY sing 297 n n C15 O18 NMY sing 298 n n C15 C16 NMY sing 299 n n C15 H15 NMY sing 300 n n C16 O16 NMY sing 301 n n C16 C17 NMY sing 302 n n C16 H16 NMY sing 303 n n C17 O17 NMY sing 304 n n C17 H171 NMY sing 305 n n C17 H172 NMY sing 306 n n C21 C20 NMY sing 307 n n C21 C22 NMY sing 308 n n C21 O21 NMY sing 309 n n C21 H21 NMY sing 310 n n C20 C19 NMY sing 311 n n C20 O20 NMY sing 312 n n C20 H20 NMY sing 313 n n C19 N23 NMY sing 314 n n C19 C18 NMY sing 315 n n C19 H19 NMY sing 316 n n C18 O22 NMY sing 317 n n C18 O18 NMY sing 318 n n C18 H18 NMY sing 319 n n C22 O22 NMY sing 320 n n C22 C23 NMY sing 321 n n C22 H22 NMY sing 322 n n C23 N19 NMY sing 323 n n C23 H231 NMY sing 324 n n C23 H232 NMY sing 325 n n N6 HN61 NMY sing 326 n n N6 HN62 NMY sing 327 n n O14 HO41 NMY sing 328 n n O20 HO22 NMY sing 329 n n O21 HO21 NMY sing 330 n n O17 H17 NMY sing 331 n n O12 HO12 NMY sing 332 n n N19 H191 NMY sing 333 n n N19 H192 NMY sing 334 n n N23 HN31 NMY sing 335 n n N23 HN32 NMY sing 336 n n # _atom_sites.entry_id 7UUN _atom_sites.fract_transf_matrix[1][1] 0.007487 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NMY A 1 301 1 NMY NMY . C 3 EDO A 1 302 1 EDO EDO . D 4 HOH A 1 401 48 HOH HOH . D 4 HOH A 2 402 118 HOH HOH . D 4 HOH A 3 403 26 HOH HOH . D 4 HOH A 4 404 24 HOH HOH . D 4 HOH A 5 405 112 HOH HOH . D 4 HOH A 6 406 54 HOH HOH . D 4 HOH A 7 407 119 HOH HOH . D 4 HOH A 8 408 74 HOH HOH . D 4 HOH A 9 409 57 HOH HOH . D 4 HOH A 10 410 98 HOH HOH . D 4 HOH A 11 411 1 HOH HOH . D 4 HOH A 12 412 7 HOH HOH . D 4 HOH A 13 413 23 HOH HOH . D 4 HOH A 14 414 84 HOH HOH . D 4 HOH A 15 415 78 HOH HOH . D 4 HOH A 16 416 108 HOH HOH . D 4 HOH A 17 417 39 HOH HOH . D 4 HOH A 18 418 85 HOH HOH . D 4 HOH A 19 419 15 HOH HOH . D 4 HOH A 20 420 104 HOH HOH . D 4 HOH A 21 421 60 HOH HOH . D 4 HOH A 22 422 13 HOH HOH . D 4 HOH A 23 423 32 HOH HOH . D 4 HOH A 24 424 50 HOH HOH . D 4 HOH A 25 425 109 HOH HOH . D 4 HOH A 26 426 33 HOH HOH . D 4 HOH A 27 427 117 HOH HOH . D 4 HOH A 28 428 105 HOH HOH . D 4 HOH A 29 429 42 HOH HOH . D 4 HOH A 30 430 9 HOH HOH . D 4 HOH A 31 431 35 HOH HOH . D 4 HOH A 32 432 27 HOH HOH . D 4 HOH A 33 433 19 HOH HOH . D 4 HOH A 34 434 110 HOH HOH . D 4 HOH A 35 435 30 HOH HOH . D 4 HOH A 36 436 100 HOH HOH . D 4 HOH A 37 437 120 HOH HOH . D 4 HOH A 38 438 76 HOH HOH . D 4 HOH A 39 439 4 HOH HOH . D 4 HOH A 40 440 114 HOH HOH . D 4 HOH A 41 441 36 HOH HOH . D 4 HOH A 42 442 72 HOH HOH . D 4 HOH A 43 443 88 HOH HOH . D 4 HOH A 44 444 96 HOH HOH . D 4 HOH A 45 445 107 HOH HOH . D 4 HOH A 46 446 14 HOH HOH . D 4 HOH A 47 447 5 HOH HOH . D 4 HOH A 48 448 34 HOH HOH . D 4 HOH A 49 449 93 HOH HOH . D 4 HOH A 50 450 3 HOH HOH . D 4 HOH A 51 451 12 HOH HOH . D 4 HOH A 52 452 90 HOH HOH . D 4 HOH A 53 453 75 HOH HOH . D 4 HOH A 54 454 11 HOH HOH . D 4 HOH A 55 455 103 HOH HOH . D 4 HOH A 56 456 17 HOH HOH . D 4 HOH A 57 457 25 HOH HOH . D 4 HOH A 58 458 82 HOH HOH . D 4 HOH A 59 459 6 HOH HOH . D 4 HOH A 60 460 113 HOH HOH . D 4 HOH A 61 461 18 HOH HOH . D 4 HOH A 62 462 81 HOH HOH . D 4 HOH A 63 463 92 HOH HOH . D 4 HOH A 64 464 95 HOH HOH . D 4 HOH A 65 465 115 HOH HOH . D 4 HOH A 66 466 111 HOH HOH . D 4 HOH A 67 467 8 HOH HOH . D 4 HOH A 68 468 106 HOH HOH . D 4 HOH A 69 469 21 HOH HOH . D 4 HOH A 70 470 29 HOH HOH . D 4 HOH A 71 471 16 HOH HOH . D 4 HOH A 72 472 83 HOH HOH . D 4 HOH A 73 473 102 HOH HOH . D 4 HOH A 74 474 86 HOH HOH . D 4 HOH A 75 475 87 HOH HOH . D 4 HOH A 76 476 91 HOH HOH . D 4 HOH A 77 477 99 HOH HOH . D 4 HOH A 78 478 43 HOH HOH . D 4 HOH A 79 479 89 HOH HOH . D 4 HOH A 80 480 64 HOH HOH . D 4 HOH A 81 481 101 HOH HOH . D 4 HOH A 82 482 41 HOH HOH . D 4 HOH A 83 483 38 HOH HOH . D 4 HOH A 84 484 116 HOH HOH . D 4 HOH A 85 485 80 HOH HOH . D 4 HOH A 86 486 79 HOH HOH . D 4 HOH A 87 487 22 HOH HOH . D 4 HOH A 88 488 94 HOH HOH . D 4 HOH A 89 489 10 HOH HOH . D 4 HOH A 90 490 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NMY . . . B 2 4.096 -11.421 9.298 1 82.69 ? C1 NMY 301 A 1 HETATM 2 O O1 NMY . . . B 2 4.739 -12.61 8.906 1 83.95 ? O1 NMY 301 A 1 HETATM 3 C C2 NMY . . . B 2 4.922 -10.66 10.303 1 82.28 ? C2 NMY 301 A 1 HETATM 4 N N2 NMY . . . B 2 6.23 -10.379 9.784 1 70.54 ? N2 NMY 301 A 1 HETATM 5 C C3 NMY . . . B 2 5.081 -11.44 11.58 1 82.83 ? C3 NMY 301 A 1 HETATM 6 O O3 NMY . . . B 2 5.4 -10.528 12.611 1 90.81 ? O3 NMY 301 A 1 HETATM 7 C C4 NMY . . . B 2 3.789 -12.032 12.049 1 80.96 ? C4 NMY 301 A 1 HETATM 8 O O4 NMY . . . B 2 4.156 -12.998 13.012 1 84.49 ? O4 NMY 301 A 1 HETATM 9 C C5 NMY . . . B 2 3.058 -12.706 10.931 1 73.19 ? C5 NMY 301 A 1 HETATM 10 O O5 NMY . . . B 2 2.882 -11.768 9.913 1 77.61 ? O5 NMY 301 A 1 HETATM 11 C C6 NMY . . . B 2 1.701 -13.128 11.409 1 71.55 ? C6 NMY 301 A 1 HETATM 12 C C7 NMY . . . B 2 4.016 -14.454 5.258 1 81.08 ? C7 NMY 301 A 1 HETATM 13 N N7 NMY . . . B 2 3.397 -15.361 4.342 1 74.92 ? N7 NMY 301 A 1 HETATM 14 C C12 NMY . . . B 2 2.998 -13.433 5.702 1 82.11 ? C12 NMY 301 A 1 HETATM 15 C C11 NMY . . . B 2 3.451 -12.594 6.866 1 83.06 ? C11 NMY 301 A 1 HETATM 16 O O11 NMY . . . B 2 2.281 -12.025 7.401 1 100.19 ? O11 NMY 301 A 1 HETATM 17 C C10 NMY . . . B 2 4.032 -13.418 7.988 1 78.81 ? C10 NMY 301 A 1 HETATM 18 C C9 NMY . . . B 2 5.043 -14.392 7.463 1 75.17 ? C9 NMY 301 A 1 HETATM 19 N N9 NMY . . . B 2 5.389 -15.255 8.534 1 80.22 ? N9 NMY 301 A 1 HETATM 20 C C8 NMY . . . B 2 4.462 -15.288 6.419 1 79.44 ? C8 NMY 301 A 1 HETATM 21 C C13 NMY . . . B 2 1.559 -11.175 6.539 1 98.47 ? C13 NMY 301 A 1 HETATM 22 C C14 NMY . . . B 2 0.906 -10.031 7.259 1 89.97 ? C14 NMY 301 A 1 HETATM 23 C C15 NMY . . . B 2 0.53 -9.204 6.078 1 99.42 ? C15 NMY 301 A 1 HETATM 24 C C16 NMY . . . B 2 1.876 -9.207 5.398 1 104.61 ? C16 NMY 301 A 1 HETATM 25 O O16 NMY . . . B 2 2.413 -10.504 5.639 1 101.53 ? O16 NMY 301 A 1 HETATM 26 C C17 NMY . . . B 2 2.817 -8.174 5.991 1 100.65 ? C17 NMY 301 A 1 HETATM 27 C C21 NMY . . . B 2 -4.012 -11.198 5.933 1 91.65 ? C21 NMY 301 A 1 HETATM 28 C C20 NMY . . . B 2 -3.925 -9.707 5.703 1 97.31 ? C20 NMY 301 A 1 HETATM 29 C C19 NMY . . . B 2 -2.609 -9.379 5.015 1 98.56 ? C19 NMY 301 A 1 HETATM 30 C C18 NMY . . . B 2 -1.556 -10.391 5.402 1 95.08 ? C18 NMY 301 A 1 HETATM 31 O O18 NMY . . . B 2 -0.257 -9.892 5.128 1 89.02 ? O18 NMY 301 A 1 HETATM 32 C C22 NMY . . . B 2 -2.884 -11.66 6.836 1 94.11 ? C22 NMY 301 A 1 HETATM 33 O O22 NMY . . . B 2 -1.761 -10.79 6.735 1 103.99 ? O22 NMY 301 A 1 HETATM 34 C C23 NMY . . . B 2 -3.326 -11.673 8.279 1 84.9 ? C23 NMY 301 A 1 HETATM 35 N N6 NMY . . . B 2 1.568 -14.536 11.132 1 82.3 ? N6 NMY 301 A 1 HETATM 36 O O14 NMY . . . B 2 -0.212 -10.428 8.017 1 97.45 ? O14 NMY 301 A 1 HETATM 37 O O20 NMY . . . B 2 -5.033 -9.323 4.894 1 94.08 ? O20 NMY 301 A 1 HETATM 38 O O21 NMY . . . B 2 -5.279 -11.458 6.533 1 78.94 ? O21 NMY 301 A 1 HETATM 39 O O17 NMY . . . B 2 2.193 -6.888 5.983 1 94.31 ? O17 NMY 301 A 1 HETATM 40 O O12 NMY . . . B 2 2.815 -12.568 4.606 1 82.9 ? O12 NMY 301 A 1 HETATM 41 N N19 NMY . . . B 2 -3.047 -12.973 8.82 1 83.76 ? N19 NMY 301 A 1 HETATM 42 N N23 NMY . . . B 2 -2.147 -8.073 5.395 1 94.42 ? N23 NMY 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #