data_7UVR # _model_server_result.job_id qg8GNjCjKXXZuUd_2DI-Mg _model_server_result.datetime_utc '2024-10-19 11:37:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uvr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":301}' # _entry.id 7UVR # _exptl.entry_id 7UVR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 431.917 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-{[(10R)-4-[(4-chlorophenyl)methyl]-5-oxo-1,2,4,5,8,9-hexahydroimidazo[1,2-a]pyrido[3,4-e]pyrimidin-7(6H)-yl]methyl}benzonitrile _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.1 _cell.angle_gamma 90 _cell.entry_id 7UVR _cell.length_a 142.171 _cell.length_b 152.515 _cell.length_c 104.268 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UVR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -49.111467 0 91.977604 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C24 H22 Cl N5 O' _chem_comp.formula_weight 431.917 _chem_comp.id PJF _chem_comp.mon_nstd_flag . _chem_comp.name 3-{[(10R)-4-[(4-chlorophenyl)methyl]-5-oxo-1,2,4,5,8,9-hexahydroimidazo[1,2-a]pyrido[3,4-e]pyrimidin-7(6H)-yl]methyl}benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C23 PJF sing 260 n n C22 N4 PJF sing 261 n n CL1 C18 PJF sing 262 n n C23 N5 PJF sing 263 n n N4 C21 PJF doub 264 n n C18 C19 PJF doub 265 n y C18 C17 PJF sing 266 n y C19 C20 PJF sing 267 n y C17 C16 PJF doub 268 n y C20 C15 PJF doub 269 n y C21 N5 PJF sing 270 n n C21 N3 PJF sing 271 n n N5 C10 PJF sing 272 n n C16 C15 PJF sing 273 n y C15 C14 PJF sing 274 n n C14 N3 PJF sing 275 n n N3 C13 PJF sing 276 n n C9 C10 PJF sing 277 n n C9 C8 PJF sing 278 n n C10 C11 PJF doub 279 n n C13 C11 PJF sing 280 n n C13 O1 PJF doub 281 n n C11 C12 PJF sing 282 n n N1 C1 PJF trip 283 n n C8 N2 PJF sing 284 n n C1 C2 PJF sing 285 n n N2 C12 PJF sing 286 n n N2 C7 PJF sing 287 n n C24 C2 PJF doub 288 n y C24 C6 PJF sing 289 n y C2 C3 PJF sing 290 n y C7 C6 PJF sing 291 n n C6 C5 PJF doub 292 n y C3 C4 PJF doub 293 n y C5 C4 PJF sing 294 n y C12 H1 PJF sing 295 n n C12 H2 PJF sing 296 n n C14 H3 PJF sing 297 n n C14 H4 PJF sing 298 n n C16 H5 PJF sing 299 n n C17 H6 PJF sing 300 n n C19 H7 PJF sing 301 n n C20 H8 PJF sing 302 n n C22 H9 PJF sing 303 n n C23 H10 PJF sing 304 n n C24 H11 PJF sing 305 n n C3 H12 PJF sing 306 n n C4 H13 PJF sing 307 n n C5 H14 PJF sing 308 n n C7 H15 PJF sing 309 n n C7 H16 PJF sing 310 n n C8 H17 PJF sing 311 n n C8 H18 PJF sing 312 n n C9 H19 PJF sing 313 n n C9 H20 PJF sing 314 n n C22 H22 PJF sing 315 n n C23 H23 PJF sing 316 n n # _atom_sites.entry_id 7UVR _atom_sites.fract_transf_matrix[1][1] 0.007034 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003756 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006557 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 PJF A 1 301 2 PJF onc . I 2 PJF B 1 301 3 PJF onc . J 2 PJF C 1 301 4 PJF onc . K 2 PJF D 1 301 5 PJF onc . L 2 PJF E 1 301 6 PJF onc . M 2 PJF F 1 301 7 PJF onc . N 2 PJF G 1 301 8 PJF onc . O 3 HOH A 1 401 1 HOH HOH . O 3 HOH A 2 402 50 HOH HOH . O 3 HOH A 3 403 101 HOH HOH . O 3 HOH A 4 404 52 HOH HOH . O 3 HOH A 5 405 64 HOH HOH . O 3 HOH A 6 406 13 HOH HOH . O 3 HOH A 7 407 90 HOH HOH . O 3 HOH A 8 408 12 HOH HOH . O 3 HOH A 9 409 45 HOH HOH . O 3 HOH A 10 410 24 HOH HOH . O 3 HOH A 11 411 35 HOH HOH . O 3 HOH A 12 412 75 HOH HOH . O 3 HOH A 13 413 78 HOH HOH . O 3 HOH A 14 414 38 HOH HOH . O 3 HOH A 15 415 88 HOH HOH . O 3 HOH A 16 416 86 HOH HOH . O 3 HOH A 17 417 67 HOH HOH . O 3 HOH A 18 418 99 HOH HOH . O 3 HOH A 19 419 92 HOH HOH . P 3 HOH B 1 401 91 HOH HOH . P 3 HOH B 2 402 31 HOH HOH . P 3 HOH B 3 403 55 HOH HOH . P 3 HOH B 4 404 28 HOH HOH . P 3 HOH B 5 405 17 HOH HOH . P 3 HOH B 6 406 48 HOH HOH . P 3 HOH B 7 407 109 HOH HOH . P 3 HOH B 8 408 62 HOH HOH . P 3 HOH B 9 409 103 HOH HOH . P 3 HOH B 10 410 97 HOH HOH . Q 3 HOH C 1 401 49 HOH HOH . Q 3 HOH C 2 402 63 HOH HOH . Q 3 HOH C 3 403 106 HOH HOH . Q 3 HOH C 4 404 21 HOH HOH . Q 3 HOH C 5 405 26 HOH HOH . Q 3 HOH C 6 406 68 HOH HOH . Q 3 HOH C 7 407 2 HOH HOH . Q 3 HOH C 8 408 102 HOH HOH . R 3 HOH D 1 401 95 HOH HOH . R 3 HOH D 2 402 30 HOH HOH . R 3 HOH D 3 403 81 HOH HOH . R 3 HOH D 4 404 108 HOH HOH . R 3 HOH D 5 405 69 HOH HOH . R 3 HOH D 6 406 7 HOH HOH . R 3 HOH D 7 407 34 HOH HOH . R 3 HOH D 8 408 14 HOH HOH . R 3 HOH D 9 409 53 HOH HOH . R 3 HOH D 10 410 61 HOH HOH . R 3 HOH D 11 411 79 HOH HOH . R 3 HOH D 12 412 15 HOH HOH . R 3 HOH D 13 413 43 HOH HOH . R 3 HOH D 14 414 39 HOH HOH . R 3 HOH D 15 415 46 HOH HOH . R 3 HOH D 16 416 73 HOH HOH . R 3 HOH D 17 417 82 HOH HOH . R 3 HOH D 18 418 93 HOH HOH . S 3 HOH E 1 401 58 HOH HOH . S 3 HOH E 2 402 25 HOH HOH . S 3 HOH E 3 403 80 HOH HOH . S 3 HOH E 4 404 23 HOH HOH . S 3 HOH E 5 405 36 HOH HOH . S 3 HOH E 6 406 9 HOH HOH . S 3 HOH E 7 407 57 HOH HOH . S 3 HOH E 8 408 22 HOH HOH . S 3 HOH E 9 409 76 HOH HOH . S 3 HOH E 10 410 66 HOH HOH . S 3 HOH E 11 411 19 HOH HOH . S 3 HOH E 12 412 44 HOH HOH . S 3 HOH E 13 413 65 HOH HOH . S 3 HOH E 14 414 47 HOH HOH . S 3 HOH E 15 415 16 HOH HOH . S 3 HOH E 16 416 37 HOH HOH . S 3 HOH E 17 417 94 HOH HOH . T 3 HOH F 1 401 4 HOH HOH . T 3 HOH F 2 402 18 HOH HOH . T 3 HOH F 3 403 11 HOH HOH . T 3 HOH F 4 404 60 HOH HOH . T 3 HOH F 5 405 71 HOH HOH . T 3 HOH F 6 406 59 HOH HOH . T 3 HOH F 7 407 3 HOH HOH . T 3 HOH F 8 408 29 HOH HOH . T 3 HOH F 9 409 32 HOH HOH . T 3 HOH F 10 410 77 HOH HOH . T 3 HOH F 11 411 27 HOH HOH . T 3 HOH F 12 412 40 HOH HOH . T 3 HOH F 13 413 56 HOH HOH . T 3 HOH F 14 414 105 HOH HOH . T 3 HOH F 15 415 96 HOH HOH . T 3 HOH F 16 416 5 HOH HOH . T 3 HOH F 17 417 104 HOH HOH . T 3 HOH F 18 418 107 HOH HOH . T 3 HOH F 19 419 10 HOH HOH . U 3 HOH G 1 401 70 HOH HOH . U 3 HOH G 2 402 72 HOH HOH . U 3 HOH G 3 403 6 HOH HOH . U 3 HOH G 4 404 8 HOH HOH . U 3 HOH G 5 405 89 HOH HOH . U 3 HOH G 6 406 84 HOH HOH . U 3 HOH G 7 407 41 HOH HOH . U 3 HOH G 8 408 51 HOH HOH . U 3 HOH G 9 409 87 HOH HOH . U 3 HOH G 10 410 54 HOH HOH . U 3 HOH G 11 411 20 HOH HOH . U 3 HOH G 12 412 33 HOH HOH . U 3 HOH G 13 413 83 HOH HOH . U 3 HOH G 14 414 85 HOH HOH . U 3 HOH G 15 415 74 HOH HOH . U 3 HOH G 16 416 42 HOH HOH . U 3 HOH G 17 417 100 HOH HOH . U 3 HOH G 18 418 98 HOH HOH . U 3 HOH G 19 419 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PJF . . . N 2 -5.316 -22.44 13.888 1 40.97 ? C1 PJF 301 G 1 HETATM 2 C C10 PJF . . . N 2 1.038 -19.658 11.271 1 36.85 ? C10 PJF 301 G 1 HETATM 3 C C11 PJF . . . N 2 0.715 -20.917 10.896 1 33.33 ? C11 PJF 301 G 1 HETATM 4 C C12 PJF . . . N 2 -0.682 -21.27 10.446 1 37.14 ? C12 PJF 301 G 1 HETATM 5 C C13 PJF . . . N 2 1.671 -21.919 10.948 1 36.74 ? C13 PJF 301 G 1 HETATM 6 C C14 PJF . . . N 2 4.029 -22.635 11.307 1 42.21 ? C14 PJF 301 G 1 HETATM 7 C C15 PJF . . . N 2 4.11 -23.44 12.58 1 36.67 ? C15 PJF 301 G 1 HETATM 8 C C16 PJF . . . N 2 3.056 -23.428 13.47 1 42.95 ? C16 PJF 301 G 1 HETATM 9 C C17 PJF . . . N 2 3.095 -24.158 14.633 1 43.37 ? C17 PJF 301 G 1 HETATM 10 C C18 PJF . . . N 2 4.205 -24.915 14.914 1 43.83 ? C18 PJF 301 G 1 HETATM 11 C C19 PJF . . . N 2 5.274 -24.959 14.047 1 35.52 ? C19 PJF 301 G 1 HETATM 12 C C2 PJF . . . N 2 -4.827 -22.541 12.547 1 42.58 ? C2 PJF 301 G 1 HETATM 13 C C20 PJF . . . N 2 5.213 -24.219 12.877 1 37.68 ? C20 PJF 301 G 1 HETATM 14 C C21 PJF . . . N 2 3.182 -20.345 11.872 1 44.87 ? C21 PJF 301 G 1 HETATM 15 C C22 PJF . . . N 2 4.092 -18.587 12.898 1 38.59 ? C22 PJF 301 G 1 HETATM 16 C C23 PJF . . . N 2 2.744 -18.112 12.336 1 37.35 ? C23 PJF 301 G 1 HETATM 17 C C24 PJF . . . N 2 -4.121 -21.487 11.99 1 39.63 ? C24 PJF 301 G 1 HETATM 18 C C3 PJF . . . N 2 -5.143 -23.666 11.788 1 38.94 ? C3 PJF 301 G 1 HETATM 19 C C4 PJF . . . N 2 -4.708 -23.729 10.484 1 39.02 ? C4 PJF 301 G 1 HETATM 20 C C5 PJF . . . N 2 -3.991 -22.679 9.93 1 40.02 ? C5 PJF 301 G 1 HETATM 21 C C6 PJF . . . N 2 -3.691 -21.552 10.678 1 41.11 ? C6 PJF 301 G 1 HETATM 22 C C7 PJF . . . N 2 -2.919 -20.417 10.067 1 41.92 ? C7 PJF 301 G 1 HETATM 23 C C8 PJF . . . N 2 -1.086 -18.889 10.274 1 40.35 ? C8 PJF 301 G 1 HETATM 24 C C9 PJF . . . N 2 0.093 -18.505 11.13 1 41.19 ? C9 PJF 301 G 1 HETATM 25 N N1 PJF . . . N 2 -5.578 -22.437 15 1 43.54 ? N1 PJF 301 G 1 HETATM 26 N N2 PJF . . . N 2 -1.624 -20.18 10.71 1 41.19 ? N2 PJF 301 G 1 HETATM 27 N N3 PJF . . . N 2 2.935 -21.617 11.361 1 42.56 ? N3 PJF 301 G 1 HETATM 28 N N4 PJF . . . N 2 4.291 -19.981 12.433 1 41.26 ? N4 PJF 301 G 1 HETATM 29 N N5 PJF . . . N 2 2.242 -19.385 11.797 1 41.88 ? N5 PJF 301 G 1 HETATM 30 O O1 PJF . . . N 2 1.373 -23.08 10.638 1 35.12 ? O1 PJF 301 G 1 HETATM 31 CL CL1 PJF . . . N 2 4.239 -25.825 16.406 1 62.62 ? CL1 PJF 301 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #