data_7UVU # _model_server_result.job_id XFL62VZqzsY-QwG75cQlDA _model_server_result.datetime_utc '2024-11-21 16:04:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 7UVU # _exptl.entry_id 7UVU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.865 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-({3-[(4-chlorophenyl)methyl]-4-oxo-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6(4H)-yl}methyl)benzonitrile _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.01 _cell.angle_gamma 90 _cell.entry_id 7UVU _cell.length_a 142.147 _cell.length_b 152.662 _cell.length_c 104.342 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # _chem_comp.formula 'C22 H19 Cl N4 O' _chem_comp.formula_weight 390.865 _chem_comp.id OY9 _chem_comp.mon_nstd_flag . _chem_comp.name 3-({3-[(4-chlorophenyl)methyl]-4-oxo-3,5,7,8-tetrahydropyrido[4,3-d]pyrimidin-6(4H)-yl}methyl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C03 OY9 sing 237 n n C02 N01 OY9 trip 238 n n C03 C04 OY9 doub 239 n y C03 C28 OY9 sing 240 n y C04 C05 OY9 sing 241 n y C05 C06 OY9 doub 242 n y C06 C07 OY9 sing 243 n y C07 C08 OY9 sing 244 n n C07 C28 OY9 doub 245 n y C08 N09 OY9 sing 246 n n C10 C11 OY9 sing 247 n n C10 N09 OY9 sing 248 n n C11 C12 OY9 sing 249 n n C12 C26 OY9 doub 250 n n C12 N13 OY9 sing 251 n n C14 N13 OY9 doub 252 n n C14 N15 OY9 sing 253 n n C16 C17 OY9 sing 254 n n C16 N15 OY9 sing 255 n n C17 C18 OY9 doub 256 n y C17 C23 OY9 sing 257 n y C18 C19 OY9 sing 258 n y C19 C20 OY9 doub 259 n y C20 C22 OY9 sing 260 n y C22 C23 OY9 doub 261 n y C24 C26 OY9 sing 262 n n C24 N15 OY9 sing 263 n n C24 O25 OY9 doub 264 n n C26 C27 OY9 sing 265 n n C27 N09 OY9 sing 266 n n C20 CL21 OY9 sing 267 n n C04 H1 OY9 sing 268 n n C05 H2 OY9 sing 269 n n C06 H3 OY9 sing 270 n n C08 H4 OY9 sing 271 n n C08 H5 OY9 sing 272 n n C10 H6 OY9 sing 273 n n C10 H7 OY9 sing 274 n n C11 H8 OY9 sing 275 n n C11 H9 OY9 sing 276 n n C14 H10 OY9 sing 277 n n C16 H11 OY9 sing 278 n n C16 H12 OY9 sing 279 n n C18 H13 OY9 sing 280 n n C19 H14 OY9 sing 281 n n C22 H15 OY9 sing 282 n n C23 H16 OY9 sing 283 n n C27 H17 OY9 sing 284 n n C27 H18 OY9 sing 285 n n C28 H19 OY9 sing 286 n n # _atom_sites.entry_id 7UVU _atom_sites.fract_transf_matrix[1][1] 0.007035 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003742 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 OY9 A 1 301 8 OY9 TR1 . I 2 OY9 B 1 301 9 OY9 TR1 . J 2 OY9 C 1 301 10 OY9 TR1 . K 2 OY9 D 1 301 11 OY9 TR1 . L 2 OY9 E 1 301 12 OY9 TR1 . M 2 OY9 F 1 301 13 OY9 TR1 . N 2 OY9 G 1 301 14 OY9 TR1 . O 3 HOH A 1 401 663 HOH HOH . O 3 HOH A 2 402 81 HOH HOH . O 3 HOH A 3 403 650 HOH HOH . O 3 HOH A 4 404 662 HOH HOH . O 3 HOH A 5 405 621 HOH HOH . O 3 HOH A 6 406 605 HOH HOH . O 3 HOH A 7 407 603 HOH HOH . O 3 HOH A 8 408 675 HOH HOH . O 3 HOH A 9 409 417 HOH HOH . O 3 HOH A 10 410 597 HOH HOH . O 3 HOH A 11 411 220 HOH HOH . O 3 HOH A 12 412 623 HOH HOH . O 3 HOH A 13 413 604 HOH HOH . O 3 HOH A 14 414 11 HOH HOH . O 3 HOH A 15 415 639 HOH HOH . O 3 HOH A 16 416 652 HOH HOH . P 3 HOH B 1 401 637 HOH HOH . P 3 HOH B 2 402 601 HOH HOH . P 3 HOH B 3 403 466 HOH HOH . P 3 HOH B 4 404 645 HOH HOH . P 3 HOH B 5 405 30 HOH HOH . P 3 HOH B 6 406 269 HOH HOH . P 3 HOH B 7 407 664 HOH HOH . P 3 HOH B 8 408 611 HOH HOH . P 3 HOH B 9 409 661 HOH HOH . P 3 HOH B 10 410 202 HOH HOH . P 3 HOH B 11 411 479 HOH HOH . P 3 HOH B 12 412 627 HOH HOH . P 3 HOH B 13 413 350 HOH HOH . P 3 HOH B 14 414 362 HOH HOH . P 3 HOH B 15 415 646 HOH HOH . P 3 HOH B 16 416 610 HOH HOH . P 3 HOH B 17 417 671 HOH HOH . Q 3 HOH C 1 401 642 HOH HOH . Q 3 HOH C 2 402 617 HOH HOH . Q 3 HOH C 3 403 656 HOH HOH . Q 3 HOH C 4 404 600 HOH HOH . Q 3 HOH C 5 405 608 HOH HOH . Q 3 HOH C 6 406 665 HOH HOH . Q 3 HOH C 7 407 654 HOH HOH . Q 3 HOH C 8 408 644 HOH HOH . Q 3 HOH C 9 409 134 HOH HOH . Q 3 HOH C 10 410 615 HOH HOH . Q 3 HOH C 11 411 640 HOH HOH . Q 3 HOH C 12 412 630 HOH HOH . Q 3 HOH C 13 413 266 HOH HOH . Q 3 HOH C 14 414 622 HOH HOH . Q 3 HOH C 15 415 599 HOH HOH . Q 3 HOH C 16 416 655 HOH HOH . Q 3 HOH C 17 417 564 HOH HOH . Q 3 HOH C 18 418 13 HOH HOH . Q 3 HOH C 19 419 379 HOH HOH . Q 3 HOH C 20 420 657 HOH HOH . Q 3 HOH C 21 421 614 HOH HOH . Q 3 HOH C 22 422 497 HOH HOH . Q 3 HOH C 23 423 643 HOH HOH . Q 3 HOH C 24 424 188 HOH HOH . Q 3 HOH C 25 425 445 HOH HOH . R 3 HOH D 1 401 633 HOH HOH . R 3 HOH D 2 402 595 HOH HOH . R 3 HOH D 3 403 673 HOH HOH . R 3 HOH D 4 404 616 HOH HOH . R 3 HOH D 5 405 175 HOH HOH . R 3 HOH D 6 406 660 HOH HOH . R 3 HOH D 7 407 153 HOH HOH . R 3 HOH D 8 408 619 HOH HOH . R 3 HOH D 9 409 440 HOH HOH . R 3 HOH D 10 410 142 HOH HOH . R 3 HOH D 11 411 626 HOH HOH . R 3 HOH D 12 412 116 HOH HOH . R 3 HOH D 13 413 578 HOH HOH . R 3 HOH D 14 414 629 HOH HOH . R 3 HOH D 15 415 667 HOH HOH . R 3 HOH D 16 416 346 HOH HOH . R 3 HOH D 17 417 612 HOH HOH . R 3 HOH D 18 418 252 HOH HOH . S 3 HOH E 1 401 672 HOH HOH . S 3 HOH E 2 402 634 HOH HOH . S 3 HOH E 3 403 668 HOH HOH . S 3 HOH E 4 404 294 HOH HOH . S 3 HOH E 5 405 625 HOH HOH . S 3 HOH E 6 406 659 HOH HOH . S 3 HOH E 7 407 674 HOH HOH . S 3 HOH E 8 408 676 HOH HOH . S 3 HOH E 9 409 609 HOH HOH . S 3 HOH E 10 410 17 HOH HOH . S 3 HOH E 11 411 35 HOH HOH . S 3 HOH E 12 412 628 HOH HOH . S 3 HOH E 13 413 161 HOH HOH . S 3 HOH E 14 414 618 HOH HOH . S 3 HOH E 15 415 666 HOH HOH . S 3 HOH E 16 416 132 HOH HOH . S 3 HOH E 17 417 285 HOH HOH . T 3 HOH F 1 401 297 HOH HOH . T 3 HOH F 2 402 620 HOH HOH . T 3 HOH F 3 403 9 HOH HOH . T 3 HOH F 4 404 631 HOH HOH . T 3 HOH F 5 405 594 HOH HOH . T 3 HOH F 6 406 101 HOH HOH . T 3 HOH F 7 407 636 HOH HOH . T 3 HOH F 8 408 602 HOH HOH . T 3 HOH F 9 409 653 HOH HOH . T 3 HOH F 10 410 669 HOH HOH . T 3 HOH F 11 411 632 HOH HOH . T 3 HOH F 12 412 596 HOH HOH . T 3 HOH F 13 413 613 HOH HOH . T 3 HOH F 14 414 282 HOH HOH . T 3 HOH F 15 415 641 HOH HOH . U 3 HOH G 1 401 638 HOH HOH . U 3 HOH G 2 402 651 HOH HOH . U 3 HOH G 3 403 606 HOH HOH . U 3 HOH G 4 404 658 HOH HOH . U 3 HOH G 5 405 647 HOH HOH . U 3 HOH G 6 406 624 HOH HOH . U 3 HOH G 7 407 670 HOH HOH . U 3 HOH G 8 408 232 HOH HOH . U 3 HOH G 9 409 598 HOH HOH . U 3 HOH G 10 410 649 HOH HOH . U 3 HOH G 11 411 607 HOH HOH . U 3 HOH G 12 412 635 HOH HOH . U 3 HOH G 13 413 474 HOH HOH . U 3 HOH G 14 414 555 HOH HOH . U 3 HOH G 15 415 473 HOH HOH . U 3 HOH G 16 416 221 HOH HOH . U 3 HOH G 17 417 648 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 OY9 . . . I 2 -29.66 68.021 -10.456 1 54.45 ? C02 OY9 301 B 1 HETATM 2 C C03 OY9 . . . I 2 -30.851 69.01 -10.542 1 48.13 ? C03 OY9 301 B 1 HETATM 3 C C04 OY9 . . . I 2 -30.69 70.178 -9.826 1 47.47 ? C04 OY9 301 B 1 HETATM 4 C C05 OY9 . . . I 2 -31.692 71.167 -9.822 1 50.18 ? C05 OY9 301 B 1 HETATM 5 C C06 OY9 . . . I 2 -32.87 70.927 -10.558 1 53.04 ? C06 OY9 301 B 1 HETATM 6 C C07 OY9 . . . I 2 -33.056 69.776 -11.263 1 49.3 ? C07 OY9 301 B 1 HETATM 7 C C08 OY9 . . . I 2 -34.409 69.675 -12.062 1 48.56 ? C08 OY9 301 B 1 HETATM 8 C C10 OY9 . . . I 2 -36.078 68.518 -12.664 1 49.81 ? C10 OY9 301 B 1 HETATM 9 C C11 OY9 . . . I 2 -36.918 67.239 -12.286 1 47.88 ? C11 OY9 301 B 1 HETATM 10 C C12 OY9 . . . I 2 -37.519 67.465 -10.896 1 50.24 ? C12 OY9 301 B 1 HETATM 11 C C14 OY9 . . . I 2 -39.142 66.881 -9.346 1 60.59 ? C14 OY9 301 B 1 HETATM 12 C C16 OY9 . . . I 2 -39.381 67.916 -7.169 1 51.85 ? C16 OY9 301 B 1 HETATM 13 C C17 OY9 . . . I 2 -38.813 66.882 -6.21 1 50.27 ? C17 OY9 301 B 1 HETATM 14 C C18 OY9 . . . I 2 -37.488 66.586 -6.289 1 50.63 ? C18 OY9 301 B 1 HETATM 15 C C19 OY9 . . . I 2 -36.952 65.643 -5.414 1 51.23 ? C19 OY9 301 B 1 HETATM 16 C C20 OY9 . . . I 2 -37.79 65.031 -4.481 1 56.1 ? C20 OY9 301 B 1 HETATM 17 C C22 OY9 . . . I 2 -39.126 65.335 -4.394 1 53.82 ? C22 OY9 301 B 1 HETATM 18 C C23 OY9 . . . I 2 -39.657 66.275 -5.282 1 51.37 ? C23 OY9 301 B 1 HETATM 19 C C24 OY9 . . . I 2 -37.651 68.521 -8.775 1 55.35 ? C24 OY9 301 B 1 HETATM 20 C C26 OY9 . . . I 2 -37.016 68.37 -10.059 1 49.56 ? C26 OY9 301 B 1 HETATM 21 C C27 OY9 . . . I 2 -35.814 69.224 -10.468 1 49.44 ? C27 OY9 301 B 1 HETATM 22 C C28 OY9 . . . I 2 -32.027 68.777 -11.285 1 45.12 ? C28 OY9 301 B 1 HETATM 23 N N01 OY9 . . . I 2 -28.778 67.358 -10.351 1 51.74 ? N01 OY9 301 B 1 HETATM 24 N N09 OY9 . . . I 2 -35.187 68.805 -11.618 1 49.93 ? N09 OY9 301 B 1 HETATM 25 N N13 OY9 . . . I 2 -38.59 66.711 -10.53 1 60.19 ? N13 OY9 301 B 1 HETATM 26 N N15 OY9 . . . I 2 -38.668 67.779 -8.488 1 56.77 ? N15 OY9 301 B 1 HETATM 27 O O25 OY9 . . . I 2 -37.249 69.323 -7.961 1 56.72 ? O25 OY9 301 B 1 HETATM 28 CL CL21 OY9 . . . I 2 -37.019 63.739 -3.275 1 55.51 ? CL21 OY9 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #