data_7UXH # _model_server_result.job_id hQpJzvOFtqpEAqDQ1oOwSw _model_server_result.datetime_utc '2025-02-05 08:47:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":401}' # _entry.id 7UXH # _exptl.entry_id 7UXH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UXH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 36-meric _pdbx_struct_assembly.oligomeric_count 36 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 MA N N ? 13 PA N N ? 13 SA N N ? 13 VA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F OD2 ASP 62 F ASP 62 1_555 NA MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc2 MA O3G GTP . F GTP 401 1_555 NA MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc3 MA O2B GTP . F GTP 401 1_555 NA MG MG . F MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc4 PA O3G GTP . M GTP 401 1_555 QA MG MG . M MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc5 PA O2B GTP . M GTP 401 1_555 QA MG MG . M MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc6 SA O3G GTP . V GTP 401 1_555 TA MG MG . V MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc7 SA O2B GTP . V GTP 401 1_555 TA MG MG . V MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc8 CA OG1 THR 42 c THR 42 1_555 WA MG MG . c MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc9 VA O3G GTP . c GTP 401 1_555 WA MG MG . c MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? metalc ? metalc10 VA O2B GTP . c GTP 401 1_555 WA MG MG . c MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 7UXH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code KA 12 IHP A 1 2601 2601 IHP IHP . LA 12 IHP C 1 2601 2601 IHP IHP . MA 13 GTP F 1 401 401 GTP GTP . NA 14 MG F 1 402 402 MG MG . OA 15 GDP G 1 401 401 GDP GDP . PA 13 GTP M 1 401 401 GTP GTP . QA 14 MG M 1 402 402 MG MG . RA 15 GDP N 1 401 401 GDP GDP . SA 13 GTP V 1 401 401 GTP GTP . TA 14 MG V 1 402 402 MG MG . UA 15 GDP W 1 401 401 GDP GDP . VA 13 GTP c 1 401 401 GTP GTP . WA 14 MG c 1 402 402 MG MG . XA 15 GDP d 1 401 401 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . PA 13 244.689 256.377 294.53 1 79.56 ? PG GTP 401 M 1 HETATM 2 O O1G GTP . . . PA 13 244.756 256.653 293.049 1 79.56 ? O1G GTP 401 M 1 HETATM 3 O O2G GTP . . . PA 13 245.142 257.588 295.305 1 79.56 ? O2G GTP 401 M 1 HETATM 4 O O3G GTP . . . PA 13 245.554 255.191 294.868 1 79.56 ? O3G GTP 401 M 1 HETATM 5 O O3B GTP . . . PA 13 243.17 256.044 294.912 1 79.56 ? O3B GTP 401 M 1 HETATM 6 P PB GTP . . . PA 13 242.352 254.96 294.058 1 79.56 ? PB GTP 401 M 1 HETATM 7 O O1B GTP . . . PA 13 241.665 255.604 292.881 1 79.56 ? O1B GTP 401 M 1 HETATM 8 O O2B GTP . . . PA 13 243.248 253.825 293.639 1 79.56 ? O2B GTP 401 M 1 HETATM 9 O O3A GTP . . . PA 13 241.265 254.458 295.116 1 79.56 ? O3A GTP 401 M 1 HETATM 10 P PA GTP . . . PA 13 241.192 252.912 295.523 1 79.56 ? PA GTP 401 M 1 HETATM 11 O O1A GTP . . . PA 13 240.874 252.078 294.31 1 79.56 ? O1A GTP 401 M 1 HETATM 12 O O2A GTP . . . PA 13 242.457 252.446 296.194 1 79.56 ? O2A GTP 401 M 1 HETATM 13 O O5' GTP . . . PA 13 239.945 252.891 296.526 1 79.56 ? O5' GTP 401 M 1 HETATM 14 C C5' GTP . . . PA 13 239.216 251.707 296.692 1 79.56 ? C5' GTP 401 M 1 HETATM 15 C C4' GTP . . . PA 13 238.203 251.894 297.803 1 79.56 ? C4' GTP 401 M 1 HETATM 16 O O4' GTP . . . PA 13 236.944 252.233 297.261 1 79.56 ? O4' GTP 401 M 1 HETATM 17 C C3' GTP . . . PA 13 238.02 250.574 298.517 1 79.56 ? C3' GTP 401 M 1 HETATM 18 O O3' GTP . . . PA 13 237.584 250.787 299.838 1 79.56 ? O3' GTP 401 M 1 HETATM 19 C C2' GTP . . . PA 13 236.957 249.91 297.681 1 79.56 ? C2' GTP 401 M 1 HETATM 20 O O2' GTP . . . PA 13 236.212 248.997 298.448 1 79.56 ? O2' GTP 401 M 1 HETATM 21 C C1' GTP . . . PA 13 236.109 251.091 297.241 1 79.56 ? C1' GTP 401 M 1 HETATM 22 N N9 GTP . . . PA 13 235.541 250.921 295.894 1 79.56 ? N9 GTP 401 M 1 HETATM 23 C C8 GTP . . . PA 13 236.25 250.796 294.73 1 79.56 ? C8 GTP 401 M 1 HETATM 24 N N7 GTP . . . PA 13 235.373 250.656 293.715 1 79.56 ? N7 GTP 401 M 1 HETATM 25 C C5 GTP . . . PA 13 234.12 250.682 294.211 1 79.56 ? C5 GTP 401 M 1 HETATM 26 C C6 GTP . . . PA 13 232.876 250.578 293.609 1 79.56 ? C6 GTP 401 M 1 HETATM 27 O O6 GTP . . . PA 13 232.795 250.433 292.392 1 79.56 ? O6 GTP 401 M 1 HETATM 28 N N1 GTP . . . PA 13 231.737 250.639 294.38 1 79.56 ? N1 GTP 401 M 1 HETATM 29 C C2 GTP . . . PA 13 231.848 250.802 295.743 1 79.56 ? C2 GTP 401 M 1 HETATM 30 N N2 GTP . . . PA 13 230.753 250.861 296.49 1 79.56 ? N2 GTP 401 M 1 HETATM 31 N N3 GTP . . . PA 13 233.088 250.905 296.336 1 79.56 ? N3 GTP 401 M 1 HETATM 32 C C4 GTP . . . PA 13 234.209 250.846 295.582 1 79.56 ? C4 GTP 401 M 1 HETATM 33 H H4' GTP . . . PA 13 238.549 252.654 298.504 1 79.56 ? H4' GTP 401 M 1 HETATM 34 H H3' GTP . . . PA 13 238.946 250.003 298.475 1 79.56 ? H3' GTP 401 M 1 HETATM 35 H HO3' GTP . . . PA 13 236.959 251.542 299.858 1 79.56 ? HO3' GTP 401 M 1 HETATM 36 H H2' GTP . . . PA 13 237.419 249.418 296.825 1 79.56 ? H2' GTP 401 M 1 HETATM 37 H HO2' GTP . . . PA 13 236.024 249.386 299.328 1 79.56 ? HO2' GTP 401 M 1 HETATM 38 H H1' GTP . . . PA 13 235.302 251.22 297.962 1 79.56 ? H1' GTP 401 M 1 HETATM 39 H H8 GTP . . . PA 13 237.336 250.793 294.641 1 79.56 ? H8 GTP 401 M 1 HETATM 40 H HN1 GTP . . . PA 13 230.805 250.707 293.923 1 79.56 ? HN1 GTP 401 M 1 HETATM 41 H HN21 GTP . . . PA 13 229.839 250.785 296.056 1 79.56 ? HN21 GTP 401 M 1 HETATM 42 H HN22 GTP . . . PA 13 230.827 251.064 297.482 1 79.56 ? HN22 GTP 401 M 1 # _model_server_stats.io_time_ms 182 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 549 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 42 #