data_7UXO # _model_server_result.job_id xqNQj7riqwhirD1xzTpTrA _model_server_result.datetime_utc '2024-11-07 13:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 7UXO # _exptl.entry_id 7UXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UXO _cell.length_a 59.41 _cell.length_b 62.98 _cell.length_c 83.58 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 40 1_555 A SG CYS 98 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 B SG CYS 8 B CYS 7 1_555 D CK WHL . B WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? covale ? covale2 B SG CYS 15 B CYS 14 1_555 D CH WHL . B WHL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale3 B O TYR 18 B TYR 17 1_555 C N NH2 . B NH2 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 384 n n CJ NB WHL sing 385 n n CJ OA WHL doub 386 n n NB CC WHL sing 387 n n CC CB WHL doub 388 n y CC CD WHL sing 389 n y CB CA WHL sing 390 n y CD CE WHL doub 391 n y CA CF WHL doub 392 n y CE CF WHL sing 393 n y CF NA WHL sing 394 n n OB CG WHL doub 395 n n NA CG WHL sing 396 n n CG CH WHL sing 397 n n CA H1 WHL sing 398 n n CB H2 WHL sing 399 n n NB H3 WHL sing 400 n n CD H4 WHL sing 401 n n CE H5 WHL sing 402 n n CH H6 WHL sing 403 n n CH H7 WHL sing 404 n n CH H8 WHL sing 405 n n CK H9 WHL sing 406 n n CK H10 WHL sing 407 n n CK H11 WHL sing 408 n n NA H12 WHL sing 409 n n # _atom_sites.entry_id 7UXO _atom_sites.fract_transf_matrix[1][1] 0.016832 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NH2 B 1 101 18 NH2 NH2 . D 4 WHL B 1 102 101 WHL WHL . E 5 HOH A 1 201 34 HOH HOH . E 5 HOH A 2 202 83 HOH HOH . E 5 HOH A 3 203 57 HOH HOH . E 5 HOH A 4 204 36 HOH HOH . E 5 HOH A 5 205 14 HOH HOH . E 5 HOH A 6 206 37 HOH HOH . E 5 HOH A 7 207 20 HOH HOH . E 5 HOH A 8 208 38 HOH HOH . E 5 HOH A 9 209 3 HOH HOH . E 5 HOH A 10 210 1 HOH HOH . E 5 HOH A 11 211 42 HOH HOH . E 5 HOH A 12 212 8 HOH HOH . E 5 HOH A 13 213 15 HOH HOH . E 5 HOH A 14 214 85 HOH HOH . E 5 HOH A 15 215 17 HOH HOH . E 5 HOH A 16 216 53 HOH HOH . E 5 HOH A 17 217 49 HOH HOH . E 5 HOH A 18 218 12 HOH HOH . E 5 HOH A 19 219 54 HOH HOH . E 5 HOH A 20 220 10 HOH HOH . E 5 HOH A 21 221 7 HOH HOH . E 5 HOH A 22 222 24 HOH HOH . E 5 HOH A 23 223 23 HOH HOH . E 5 HOH A 24 224 4 HOH HOH . E 5 HOH A 25 225 72 HOH HOH . F 5 HOH B 1 201 19 HOH HOH . F 5 HOH B 2 202 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . D 4 -31.83 -12.75 -17.85 1 42.86 ? CA WHL 102 B 1 HETATM 2 C CB WHL . . . D 4 -31.214 -13.702 -18.649 1 48.82 ? CB WHL 102 B 1 HETATM 3 N NB WHL . . . D 4 -29.74 -15.641 -18.976 1 53.45 ? NB WHL 102 B 1 HETATM 4 O OB WHL . . . D 4 -33.743 -10.814 -17.145 1 54.9 ? OB WHL 102 B 1 HETATM 5 C CG WHL . . . D 4 -33.299 -10.768 -16.053 1 43.7 ? CG WHL 102 B 1 HETATM 6 C CD WHL . . . D 4 -30.197 -14.653 -16.722 1 38.34 ? CD WHL 102 B 1 HETATM 7 C CE WHL . . . D 4 -30.815 -13.695 -15.923 1 45.18 ? CE WHL 102 B 1 HETATM 8 C CH WHL . . . D 4 -33.858 -9.687 -15.126 1 34.14 ? CH WHL 102 B 1 HETATM 9 C CC WHL . . . D 4 -30.4 -14.678 -18.092 1 46.95 ? CC WHL 102 B 1 HETATM 10 C CF WHL . . . D 4 -31.654 -12.738 -16.476 1 40.69 ? CF WHL 102 B 1 HETATM 11 C CJ WHL . . . D 4 -28.815 -16.675 -18.516 1 48.89 ? CJ WHL 102 B 1 HETATM 12 C CK WHL . . . D 4 -28.12 -17.615 -19.499 1 32.42 ? CK WHL 102 B 1 HETATM 13 N NA WHL . . . D 4 -32.271 -11.716 -15.62 1 35.67 ? NA WHL 102 B 1 HETATM 14 O OA WHL . . . D 4 -28.6 -16.819 -17.365 1 57.97 ? OA WHL 102 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #