data_7UXQ # _model_server_result.job_id 1XasgD3s1vAKTH2BILsblQ _model_server_result.datetime_utc '2024-11-29 18:25:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7uxq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":101}' # _entry.id 7UXQ # _exptl.entry_id 7UXQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-(1,4-phenylene)diacetamide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7UXQ _cell.length_a 236.99 _cell.length_b 236.99 _cell.length_c 236.99 _cell.Z_PDB 192 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7UXQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall 'F 4d 2 3' _symmetry.space_group_name_H-M 'F 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,N,Q,S 1 1 B,D,I,J,K,L,M,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 40 1_555 A SG CYS 98 A CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 B SG CYS 24 B CYS 40 1_555 B SG CYS 98 B CYS 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 C C ACE 1 C ACE 0 1_555 C N ASP 2 C ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 C SG CYS 8 C CYS 7 1_555 N CH WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.72 ? covale ? covale3 C SG CYS 15 C CYS 14 1_555 N CK WHL . C WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.787 ? covale ? covale4 D C ACE 1 D ACE 0 1_555 D N ASP 2 D ASP 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 D SG CYS 8 D CYS 7 1_555 O CH WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.835 ? covale ? covale6 D SG CYS 15 D CYS 14 1_555 O CK WHL . D WHL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id WHL _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-(1,4-phenylene)diacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CK CJ WHL sing 393 n n CJ NB WHL sing 394 n n CJ OA WHL doub 395 n n NB CC WHL sing 396 n n CC CB WHL doub 397 n y CC CD WHL sing 398 n y CB CA WHL sing 399 n y CD CE WHL doub 400 n y CA CF WHL doub 401 n y CE CF WHL sing 402 n y CF NA WHL sing 403 n n OB CG WHL doub 404 n n NA CG WHL sing 405 n n CG CH WHL sing 406 n n CA H1 WHL sing 407 n n CB H2 WHL sing 408 n n NB H3 WHL sing 409 n n CD H4 WHL sing 410 n n CE H5 WHL sing 411 n n CH H6 WHL sing 412 n n CH H7 WHL sing 413 n n CH H8 WHL sing 414 n n CK H9 WHL sing 415 n n CK H10 WHL sing 416 n n CK H11 WHL sing 417 n n NA H12 WHL sing 418 n n # _atom_sites.entry_id 7UXQ _atom_sites.fract_transf_matrix[1][1] 0.00422 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00422 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00422 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 201 4 EDO EDO . F 3 EDO A 1 202 6 EDO EDO . G 3 EDO A 1 203 10 EDO EDO . H 3 EDO A 1 204 11 EDO EDO . I 3 EDO B 1 201 1 EDO EDO . J 3 EDO B 1 202 2 EDO EDO . K 3 EDO B 1 203 3 EDO EDO . L 3 EDO B 1 204 5 EDO EDO . M 3 EDO B 1 205 9 EDO EDO . N 4 WHL C 1 101 101 WHL WHL . O 4 WHL D 1 101 101 WHL WHL . P 3 EDO D 1 102 8 EDO EDO . Q 5 HOH A 1 301 3 HOH HOH . Q 5 HOH A 2 302 4 HOH HOH . Q 5 HOH A 3 303 10 HOH HOH . Q 5 HOH A 4 304 12 HOH HOH . R 5 HOH B 1 301 11 HOH HOH . R 5 HOH B 2 302 2 HOH HOH . R 5 HOH B 3 303 1 HOH HOH . R 5 HOH B 4 304 13 HOH HOH . R 5 HOH B 5 305 6 HOH HOH . R 5 HOH B 6 306 7 HOH HOH . R 5 HOH B 7 307 8 HOH HOH . S 5 HOH C 1 201 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA WHL . . . N 4 -69.602 -21.463 -19.765 1 53.8 ? CA WHL 101 C 1 HETATM 2 C CB WHL . . . N 4 -69.459 -21.241 -18.417 1 65.26 ? CB WHL 101 C 1 HETATM 3 N NB WHL . . . N 4 -69.805 -21.799 -16.106 1 66.76 ? NB WHL 101 C 1 HETATM 4 O OB WHL . . . N 4 -69.17 -20.913 -22.321 1 66.97 ? OB WHL 101 C 1 HETATM 5 C CG WHL . . . N 4 -69.86 -21.821 -22.633 1 67.36 ? CG WHL 101 C 1 HETATM 6 C CD WHL . . . N 4 -70.68 -23.255 -17.951 1 59.68 ? CD WHL 101 C 1 HETATM 7 C CE WHL . . . N 4 -70.826 -23.47 -19.322 1 61.33 ? CE WHL 101 C 1 HETATM 8 C CH WHL . . . N 4 -70.124 -22.006 -24.119 1 70.04 ? CH WHL 101 C 1 HETATM 9 C CC WHL . . . N 4 -69.986 -22.135 -17.506 1 64.03 ? CC WHL 101 C 1 HETATM 10 C CF WHL . . . N 4 -70.265 -22.579 -20.231 1 60 ? CF WHL 101 C 1 HETATM 11 C CJ WHL . . . N 4 -69.772 -22.727 -14.998 1 72.71 ? CJ WHL 101 C 1 HETATM 12 C CK WHL . . . N 4 -69.576 -22.112 -13.616 1 66.64 ? CK WHL 101 C 1 HETATM 13 N NA WHL . . . N 4 -70.442 -22.755 -21.666 1 66.5 ? NA WHL 101 C 1 HETATM 14 O OA WHL . . . N 4 -69.882 -23.903 -15.144 1 77.82 ? OA WHL 101 C 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #